mRNA_H-elongata_contig155519.3640.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig155519.3640.1
Unique NamemRNA_H-elongata_contig155519.3640.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 1.870e-100
Identity = 155/281 (55.16%), Postives = 204/281 (72.60%), Query Frame = 2
Query:    2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRHSTHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPARTGFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAHCGMALVVIIYALSS 844
            S SCV +TNFY RL+ ATIGP+ VLGALA++Y  +  RNRHS   ++ AK+KHLS+ +F++ ++YSSVS+ IFQTFVC+ +D  V YLRADY L CSTD+H A   YAG+M  VYP GIPA F  WL +NR+ +V VD  A  G    ++    +   + LWAPYK  RYY+EV+ECGRR+ L GLAVFIYPGS+AQ+A+E + +  F  + ++LSPFAD LD WLYR GA +I++SM+L LLLKVD +DE+S SQ +FA LLI+AH GM L + + A+ S
Sbjct:  108 SASCVVDTNFYGRLLFATIGPLVVLGALALTYAVSRSRNRHSPAGIQTAKHKHLSIALFIMFVVYSSVSFNIFQTFVCETLDDGVEYLRADYSLVCSTDTHTAMKVYAGLMIFVYPFGIPAFFTLWLVSNRHDLVKVD--ANGGSTATAKSLGNLQPMRDLWAPYKPRRYYFEVVECGRRIALTGLAVFIYPGSAAQVALEVVFAAFFIGISDVLSPFADPLDAWLYRSGAWVIFISMFLTLLLKVDASDEDSQSQELFAKLLISAHVGMVLAIAVQAVLS 386          
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE)

HSP 1 Score: 296 bits (759), Expect = 6.020e-94
Identity = 151/282 (53.55%), Postives = 196/282 (69.50%), Query Frame = 2
Query:    2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRHSTHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPARTGFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAHCGMALVVIIYALSSA 847
            S  C+ ETNFY RL  +TI P+A+LG LA  +  A   NRHS   MR A +KHLS+ +F++  +YSSVS+ IFQTF+C+ +D EV YLRADY L CST +H     YAG+M LVYP+GIPA FAWWL +NR  +V   +   T   PE+ R       K LW PYK  RY+YE++ECGRR+VL GLAVF++PG++AQ+AIE   +     VFE+L+PF D +D WLYR GAL+++ SMYLALLLKVD +DE S SQ +FA +L+AAH  M L V++ +L SA
Sbjct:   88 SFLCLVETNFYGRLAFSTIVPLAILGGLAAKHAIAKRNNRHSQVGMREATDKHLSIALFIVFAIYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLVQDRSGGTT--TPENLR-----PMKDLWEPYKPRRYFYELVECGRRIVLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPMDAWLYRSGALVVFFSMYLALLLKVDASDENSESQQVFAAVLVAAHVSMVLAVLLSSLLSA 362          
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 4.010e-91
Identity = 155/282 (54.96%), Postives = 199/282 (70.57%), Query Frame = 2
Query:    2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRHSTHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPART-GFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAHCGMALVVIIYALSS 844
            S+SC+ + NFY RL   T+GP+ V G LA +Y  +  RNRHS   M+ AK+KHLS+ +F+  ++YSSVS+ IFQTFVC+ +D  V YLRADY L CST  H A MAYAG+M LVYPVGIP  ++WWL +NR+ +V V T     G  P   R   +   + LW+ YK  RYY+EV+ECGRR+ L GLA F+ P S+AQ+AIE +L+ +F AV ++LSPFAD  D WLYR GA II+ SMYLALLLKVD +DE+S SQ  FA +LIAAH GM LVV++ A+ S
Sbjct:  784 SVSCIVDVNFYGRLFFTTVGPLVVFGGLAATYAISRSRNRHSPAGMQAAKSKHLSIALFISFVVYSSVSFNIFQTFVCETLDDGVTYLRADYSLTCSTGVHTAMMAYAGLMILVYPVGIPTVYSWWLLSNRHDLVKVGTSGNCLGGAP---RLDHLQPMRDLWSSYKPRRYYFEVLECGRRIALTGLAAFLLPDSAAQVAIEVVLAAIFMAVSDVLSPFADPFDGWLYRTGAWIIFFSMYLALLLKVDASDEDSQSQAAFAKVLIAAHVGMVLVVLVQAVLS 1062          
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 2.810e-90
Identity = 148/282 (52.48%), Postives = 193/282 (68.44%), Query Frame = 2
Query:    2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRHSTHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPARTGFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAHCGMALVVIIYALSSA 847
            S  CV ETNFY RL  +T+ P+A+LG LA ++  A   NRHS   MR A +KHLS+ +F++   YSSVS+ IFQTF+C+ +D EV YLRADY L CST +H     YAG+M LVYP+GIPA FAWWL +NR  +V   +       PE+ R       K LW PYK  RY+YE++ECGRR+ L GLAVF++PG++AQ+AIE   +     VFE+L+PF D +D  LYR GAL+++ SMYLALLLKVD +DE S SQ +FA +L+AAH  M L V++ +L SA
Sbjct:   66 SFLCVVETNFYGRLAFSTLLPLAILGGLAATHAIAKRNNRHSQVGMREATDKHLSIALFIVFATYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLVRERSSGTA--TPENLR-----PMKDLWEPYKPRRYFYELVECGRRIGLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPVDAGLYRSGALVVFYSMYLALLLKVDASDESSESQQVFAAVLVAAHVSMVLAVLLRSLLSA 340          
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: D7G8S0_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S0_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 2.080e-87
Identity = 140/278 (50.36%), Postives = 187/278 (67.27%), Query Frame = 2
Query:    2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRHSTHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPARTGFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAHCGMALVVIIYA 835
            S+SC+ ++NFY     ATI P+ V GA A++Y  +  RNRHS   M+ AK+KHLS+ +F++ ++YSSV + IFQTFVC+ +D+ + YLRADY L C T  H+A M YAG+M  VYPVGIPA +AWWL   R+ +V V  P    F         +   + LWAPYK +RYY+EV+ECG R+ L GLA F+ P S+AQ AIE +L+ +F AV ++LSPF D  D WLYR G  I   SMYLAL   VDV+DE++ SQ +FA +LIAAH GM  V+++ A
Sbjct:   73 SVSCIVDSNFYGCRFFATICPLVVFGAQAVTYTVSKSRNRHSPAGMQAAKSKHLSITLFIMFVVYSSVPFNIFQTFVCERLDTGMDYLRADYSLTCYTGVHKAMMVYAGLMIFVYPVGIPAFYAWWLLFIRHYLVKVGAP--NNFLERVPELDHLQPMRDLWAPYKPHRYYFEVVECGHRIALTGLAAFLLPNSAAQAAIEVVLAAIFVAVSDVLSPFVDPFDAWLYRIGGWITCFSMYLAL---VDVSDEDNQSQAVFAKVLIAAHAGMVAVIVVQA 345          
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 1.280e-84
Identity = 144/279 (51.61%), Postives = 191/279 (68.46%), Query Frame = 2
Query:    2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRHSTHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPARTGFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAHCGMALVVIIYAL 838
            S +CV++TNFYDRL++ATIGP+ VLG L  +Y  A  RNRH   AMR  + +HLSV +F++ ++Y++VSY IF+TFVCD +D   +YLRADY L C T  H A+  YAG+  LVYPVGIP  F WWLF NR+ +   D   +   +P ++          LW PYK + YYYEV+EC RR+ L G AVFIYP SSAQ+AI  LL+ +F  V EILSPFA  ++MWLYR G  +++ SMYLALLL+VDV+DE   SQ +F+ +++ AH  M LVV++  L
Sbjct:  745 SFACVYDTNFYDRLLMATIGPVLVLGLLGCTYVVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCIFGWWLFKNRHELKQEDREGQAELRPAAD----------LWEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVMAHVAMFLVVVVQGL 1013          
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 290 bits (741), Expect = 2.390e-84
Identity = 143/275 (52.00%), Postives = 190/275 (69.09%), Query Frame = 2
Query:    2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRHSTHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPARTGFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAHCGMALVVI 826
            S +CV++TNFYDRL++ATIGP+ VLG L  +Y  A  RNRH   AMR  + +HLSV +F++ ++Y++VSY IF+TFVCD +D   +YLRADY L C T  H A+  YAG+  LVYPVGIP  F WWLF NR+ +   D  ++   +P ++          LW PYK + YYYEV+EC RR+ L G AVFIYP SSAQ+AI  LL+ +F  V EILSPFA  ++MWLYR G  +++ SMYLALLL+VDV+DE   SQ +F+ +++ AH  M LVV+
Sbjct:  764 SFACVYDTNFYDRLLMATIGPVLVLGLLGCTYLVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCVFGWWLFKNRHELKQEDRESQAELRPAAD----------LWEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVIAHVAMFLVVV 1028          
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 1.130e-77
Identity = 140/279 (50.18%), Postives = 188/279 (67.38%), Query Frame = 2
Query:    2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRHSTHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPARTGFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAHCGMALVVIIYAL 838
            SL+CV +T+FYDRL+L TI P  VLG L  +Y            AM V K++HLSV +F++ ++Y++VSY IF+TFVCD +D   +YLR+DY L C T++H A+  YAG+M LVYPVGIP  F WWLF +R+ +           Q   ER + +  A  LW PYK + YYYEV+EC RR+ L G AVFIYP SSAQ+AI  LL+++F  V E LSPFA  ++MWLYR G  +++ SMYLALLL+VDV+DE + SQ +F+ +L+ AH  M LVV++  L
Sbjct:  769 SLACVCDTDFYDRLLLTTICPAVVLGLLGCTYL-----------AMGVVKHRHLSVALFIMFVIYATVSYTIFETFVCDPLDDGNSYLRSDYSLTCDTETHTAYRVYAGLMILVYPVGIPCVFGWWLFKHRHELK----------QEGRERRAVLKPAADLWEPYKPSTYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAIVFMVVSEFLSPFARPVEMWLYRTGHYVVFASMYLALLLRVDVSDERNQSQEVFSGVLVIAHAAMLLVVVLQGL 1026          
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 7.260e-71
Identity = 136/292 (46.58%), Postives = 189/292 (64.73%), Query Frame = 2
Query:    2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRHSTHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPARTGFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAHCGMALVVIIYALSSAFPRVRSFKIS 877
            S SCV  T+F+DRL++ATIGP+ VL  LA+++     RN  S  A+R  KNKHLS  +F++  +YSSVS+ +FQTFVCD +D  V+YLRADY L C T  + AF  YA +M  VYP+GIPA FAW L +NR  +   D       QP  +          LW  YK +RYYYE+IE  RR+VL G+AVF+ PGSSAQ+A+  LL+V+F  + E LSPF   +DM LYR+G  ++  S+Y+ALLLKV+V++E S + + F  +LI A+  MA+ +++     +F  VR ++ S
Sbjct:  756 SYSCVVITDFFDRLLIATIGPVVVLALLALTFVVGRKRNIDSEAAVRAVKNKHLSAALFVMFFIYSSVSFTVFQTFVCDTLDDGVSYLRADYSLTCDTPRYGAFRGYAAVMVCVYPIGIPATFAWLLGSNRQDLQKADRDRLANLQPLGD----------LWEAYKPSRYYYEIIEYVRRIVLTGVAVFVLPGSSAQMAVVLLLAVVFLFISESLSPFTKKIDMALYRWGNGVVLASIYVALLLKVNVSEEGSETLSAFVVVLILANVCMAITLVV----QSFLLVREWRSS 1033          
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: D7G021_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G021_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 3.850e-69
Identity = 125/269 (46.47%), Postives = 171/269 (63.57%), Query Frame = 2
Query:    2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRH--STHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPARTGFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAH 802
            S SC+ +T+F+DRL+  T+GP+AVLG L  ++  A +RNR+  S       + KHLS+ +F+L  +YSSVS  IF TF C+ ++  V+YLRADYG  C +  H AF  YAG+M LVYP+GIPA F WWL  NR+ + +         +P          AKALW  YK   +Y+ +IEC RR+ L GL VFI P S+AQ+AI  LL+  F  + E+L PF   ++ WLY  G+ +I+ SMY ALLLKVDV++E S SQT F+ +LI +H
Sbjct:   29 SFSCLVKTDFFDRLLWKTLGPLAVLGVLQATHVIARLRNRNIPSDSVQLTVRRKHLSLAIFILFFVYSSVSRDIFLTFSCETLEDGVSYLRADYGFVCFSRRHVAFRVYAGVMVLVYPLGIPALFGWWLRRNRHDLRSPSRAENADLEP----------AKALWESYKGETWYFIIIECVRRIALTGLGVFINPNSAAQVAILLLLAFGFLVLSEVLDPFEKPIETWLYLSGSCVIFASMYAALLLKVDVSNENSESQTAFSAVLILSH 287          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPF7_ECTSI1.870e-10055.16Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5KHA3_9PHAE6.020e-9453.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI3_9PHAE4.010e-9154.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUB5_ECTSI2.810e-9052.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8S0_ECTSI2.080e-8750.36Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5L324_9PHAE1.280e-8451.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTT9_ECTSI2.390e-8452.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTU5_ECTSI1.130e-7750.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSF5_9PHAE7.260e-7146.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G021_ECTSI3.850e-6946.47Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155519contigH-elongata_contig155519:412..1523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score257.7
Seed ortholog evalue5.9e-66
Seed eggNOG ortholog2880.D7FPF7
EggNOG OGs2D43J@1,2STRI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size1112
Cds size783
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155519.3640.1prot_H-elongata_contig155519.3640.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig155519 548..1330 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929917.8382938-UTR-H-elongata_contig155519:411..5471622929917.8382938-UTR-H-elongata_contig155519:411..547Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig155519 412..547 +
1691679207.7171335-UTR-H-elongata_contig155519:411..5471691679207.7171335-UTR-H-elongata_contig155519:411..547Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig155519 412..547 +
1622929917.8714128-UTR-H-elongata_contig155519:1330..15231622929917.8714128-UTR-H-elongata_contig155519:1330..1523Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig155519 1331..1523 +
1691679207.7379222-UTR-H-elongata_contig155519:1330..15231691679207.7379222-UTR-H-elongata_contig155519:1330..1523Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig155519 1331..1523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929917.8575823-CDS-H-elongata_contig155519:547..13301622929917.8575823-CDS-H-elongata_contig155519:547..1330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155519 548..1330 +
1691679207.7284214-CDS-H-elongata_contig155519:547..13301691679207.7284214-CDS-H-elongata_contig155519:547..1330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155519 548..1330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig155519.3640.1

>prot_H-elongata_contig155519.3640.1 ID=prot_H-elongata_contig155519.3640.1|Name=mRNA_H-elongata_contig155519.3640.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp
MRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLE
CSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPARTGF
QPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSS
AQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLK
VDVADEESHSQTIFAWLLIAAHCGMALVVIIYALSSAFPRVRSFKISCGK
LLACRHGCCC*
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mRNA from alignment at H-elongata_contig155519:412..1523+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig155519.3640.1 ID=mRNA_H-elongata_contig155519.3640.1|Name=mRNA_H-elongata_contig155519.3640.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1112bp|location=Sequence derived from alignment at H-elongata_contig155519:412..1523+ (Himanthalia elongata Himel1 dioecious)
GTCACTTTCGTGTGTCTTTGAGACCAATTTTTATGATCGTCTCGTTTTAG CAACTATTGGACCGATCGCAGTGCTTGGTGCGCTGGCAATTAGCTACCAA TTTGCCGTAATACGGAACAGGCACTCGACCCATGCGATGAGGGTTGCAAA AAACAAGCACCTCTCCGTTGTTGTATTTCTACTCGTTATCTTGTATTCTT CTGTGTCTTACAAGATCTTCCAGACGTTCGTTTGCGATTTCATGGATTCC GAGGTAGCCTACCTGCGCGCCGATTACGGCCTTGAGTGCTCGACCGATAG CCACAGAGCTTTCATGGCGTACGCAGGAATCATGGCGTTAGTGTATCCAG TTGGAATCCCGGCTGCATTTGCTTGGTGGCTGTTCACCAATCGATATAGC ATCGTGAATGTAGATACACCTGCTAGGACGGGGTTTCAGCCAGAGTCGGA GCGCTTTAGTGCTGTGGACGCTGCCAAAGCCCTCTGGGCACCGTACAAGC GGAACCGCTACTACTACGAAGTTATCGAGTGCGGTCGACGGCTTGTGCTC GCTGGCCTCGCCGTCTTCATCTACCCTGGCAGTTCGGCGCAGATAGCAAT CGAAGCGCTATTATCGGTAATGTTCTACGCCGTGTTTGAGATTCTAAGTC CATTCGCCGACTCCTTGGACATGTGGCTGTACCGTTTTGGGGCATTGATT ATATATCTCAGCATGTACCTCGCGTTGCTCTTGAAGGTAGATGTCGCGGA CGAGGAGAGCCATAGCCAAACTATTTTTGCCTGGCTGTTGATCGCCGCTC ACTGTGGTATGGCATTGGTCGTCATCATTTACGCCCTTTCTTCCGCGTTT CCCCGTGTGAGATCATTCAAGATTAGTTGCGGAAAGCTTTTGGCGTGTCG GCATGGGTGTTGTTGTTGAATTTGTTGTCGTATGTGGGTACCAGTGAGGG GGTATTGGCAGACTCCGCCCTGCACGTGCATTGGTAGTTTCTCAAGGGCG TTGATGTCATTATTAGACACTAACCCCAGAACATTTGCAAGCTACCTGGG GAGGCTTGACCAAGGCTTCTATTTCGTGGTGTAACCTATTTACATTGATA GGAAATCGGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig155519:412..1523+

>mRNA_H-elongata_contig155519.3640.1 ID=mRNA_H-elongata_contig155519.3640.1|Name=mRNA_H-elongata_contig155519.3640.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig155519:412..1523+ (Himanthalia elongata Himel1 dioecious)
ATGAGGGTTGCAAAAAACAAGCACCTCTCCGTTGTTGTATTTCTACTCGT
TATCTTGTATTCTTCTGTGTCTTACAAGATCTTCCAGACGTTCGTTTGCG
ATTTCATGGATTCCGAGGTAGCCTACCTGCGCGCCGATTACGGCCTTGAG
TGCTCGACCGATAGCCACAGAGCTTTCATGGCGTACGCAGGAATCATGGC
GTTAGTGTATCCAGTTGGAATCCCGGCTGCATTTGCTTGGTGGCTGTTCA
CCAATCGATATAGCATCGTGAATGTAGATACACCTGCTAGGACGGGGTTT
CAGCCAGAGTCGGAGCGCTTTAGTGCTGTGGACGCTGCCAAAGCCCTCTG
GGCACCGTACAAGCGGAACCGCTACTACTACGAAGTTATCGAGTGCGGTC
GACGGCTTGTGCTCGCTGGCCTCGCCGTCTTCATCTACCCTGGCAGTTCG
GCGCAGATAGCAATCGAAGCGCTATTATCGGTAATGTTCTACGCCGTGTT
TGAGATTCTAAGTCCATTCGCCGACTCCTTGGACATGTGGCTGTACCGTT
TTGGGGCATTGATTATATATCTCAGCATGTACCTCGCGTTGCTCTTGAAG
GTAGATGTCGCGGACGAGGAGAGCCATAGCCAAACTATTTTTGCCTGGCT
GTTGATCGCCGCTCACTGTGGTATGGCATTGGTCGTCATCATTTACGCCC
TTTCTTCCGCGTTTCCCCGTGTGAGATCATTCAAGATTAGTTGCGGAAAG
CTTTTGGCGTGTCGGCATGGGTGTTGTTGTTGAATGAGGGTTGCAAAAAA
CAAGCACCTCTCCGTTGTTGTATTTCTACTCGTTATCTTGTATTCTTCTG
TGTCTTACAAGATCTTCCAGACGTTCGTTTGCGATTTCATGGATTCCGAG
GTAGCCTACCTGCGCGCCGATTACGGCCTTGAGTGCTCGACCGATAGCCA
CAGAGCTTTCATGGCGTACGCAGGAATCATGGCGTTAGTGTATCCAGTTG
GAATCCCGGCTGCATTTGCTTGGTGGCTGTTCACCAATCGATATAGCATC
GTGAATGTAGATACACCTGCTAGGACGGGGTTTCAGCCAGAGTCGGAGCG
CTTTAGTGCTGTGGACGCTGCCAAAGCCCTCTGGGCACCGTACAAGCGGA
ACCGCTACTACTACGAAGTTATCGAGTGCGGTCGACGGCTTGTGCTCGCT
GGCCTCGCCGTCTTCATCTACCCTGGCAGTTCGGCGCAGATAGCAATCGA
AGCGCTATTATCGGTAATGTTCTACGCCGTGTTTGAGATTCTAAGTCCAT
TCGCCGACTCCTTGGACATGTGGCTGTACCGTTTTGGGGCATTGATTATA
TATCTCAGCATGTACCTCGCGTTGCTCTTGAAGGTAGATGTCGCGGACGA
GGAGAGCCATAGCCAAACTATTTTTGCCTGGCTGTTGATCGCCGCTCACT
GTGGTATGGCATTGGTCGTCATCATTTACGCCCTTTCTTCCGCGTTTCCC
CGTGTGAGATCATTCAAGATTAGTTGCGGAAAGCTTTTGGCGTGTCGGCA
TGGGTGTTGTTGTTGA
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