mRNA_H-elongata_contig155519.3640.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI) HSP 1 Score: 313 bits (802), Expect = 1.870e-100 Identity = 155/281 (55.16%), Postives = 204/281 (72.60%), Query Frame = 2
Query: 2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRHSTHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPARTGFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAHCGMALVVIIYALSS 844
S SCV +TNFY RL+ ATIGP+ VLGALA++Y + RNRHS ++ AK+KHLS+ +F++ ++YSSVS+ IFQTFVC+ +D V YLRADY L CSTD+H A YAG+M VYP GIPA F WL +NR+ +V VD A G ++ + + LWAPYK RYY+EV+ECGRR+ L GLAVFIYPGS+AQ+A+E + + F + ++LSPFAD LD WLYR GA +I++SM+L LLLKVD +DE+S SQ +FA LLI+AH GM L + + A+ S
Sbjct: 108 SASCVVDTNFYGRLLFATIGPLVVLGALALTYAVSRSRNRHSPAGIQTAKHKHLSIALFIMFVVYSSVSFNIFQTFVCETLDDGVEYLRADYSLVCSTDTHTAMKVYAGLMIFVYPFGIPAFFTLWLVSNRHDLVKVD--ANGGSTATAKSLGNLQPMRDLWAPYKPRRYYFEVVECGRRIALTGLAVFIYPGSAAQVALEVVFAAFFIGISDVLSPFADPLDAWLYRSGAWVIFISMFLTLLLKVDASDEDSQSQELFAKLLISAHVGMVLAIAVQAVLS 386
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE) HSP 1 Score: 296 bits (759), Expect = 6.020e-94 Identity = 151/282 (53.55%), Postives = 196/282 (69.50%), Query Frame = 2
Query: 2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRHSTHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPARTGFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAHCGMALVVIIYALSSA 847
S C+ ETNFY RL +TI P+A+LG LA + A NRHS MR A +KHLS+ +F++ +YSSVS+ IFQTF+C+ +D EV YLRADY L CST +H YAG+M LVYP+GIPA FAWWL +NR +V + T PE+ R K LW PYK RY+YE++ECGRR+VL GLAVF++PG++AQ+AIE + VFE+L+PF D +D WLYR GAL+++ SMYLALLLKVD +DE S SQ +FA +L+AAH M L V++ +L SA
Sbjct: 88 SFLCLVETNFYGRLAFSTIVPLAILGGLAAKHAIAKRNNRHSQVGMREATDKHLSIALFIVFAIYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLVQDRSGGTT--TPENLR-----PMKDLWEPYKPRRYFYELVECGRRIVLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPMDAWLYRSGALVVFFSMYLALLLKVDASDENSESQQVFAAVLVAAHVSMVLAVLLSSLLSA 362
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE) HSP 1 Score: 305 bits (781), Expect = 4.010e-91 Identity = 155/282 (54.96%), Postives = 199/282 (70.57%), Query Frame = 2
Query: 2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRHSTHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPART-GFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAHCGMALVVIIYALSS 844
S+SC+ + NFY RL T+GP+ V G LA +Y + RNRHS M+ AK+KHLS+ +F+ ++YSSVS+ IFQTFVC+ +D V YLRADY L CST H A MAYAG+M LVYPVGIP ++WWL +NR+ +V V T G P R + + LW+ YK RYY+EV+ECGRR+ L GLA F+ P S+AQ+AIE +L+ +F AV ++LSPFAD D WLYR GA II+ SMYLALLLKVD +DE+S SQ FA +LIAAH GM LVV++ A+ S
Sbjct: 784 SVSCIVDVNFYGRLFFTTVGPLVVFGGLAATYAISRSRNRHSPAGMQAAKSKHLSIALFISFVVYSSVSFNIFQTFVCETLDDGVTYLRADYSLTCSTGVHTAMMAYAGLMILVYPVGIPTVYSWWLLSNRHDLVKVGTSGNCLGGAP---RLDHLQPMRDLWSSYKPRRYYFEVLECGRRIALTGLAAFLLPDSAAQVAIEVVLAAIFMAVSDVLSPFADPFDGWLYRTGAWIIFFSMYLALLLKVDASDEDSQSQAAFAKVLIAAHVGMVLVVLVQAVLS 1062
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI) HSP 1 Score: 286 bits (732), Expect = 2.810e-90 Identity = 148/282 (52.48%), Postives = 193/282 (68.44%), Query Frame = 2
Query: 2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRHSTHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPARTGFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAHCGMALVVIIYALSSA 847
S CV ETNFY RL +T+ P+A+LG LA ++ A NRHS MR A +KHLS+ +F++ YSSVS+ IFQTF+C+ +D EV YLRADY L CST +H YAG+M LVYP+GIPA FAWWL +NR +V + PE+ R K LW PYK RY+YE++ECGRR+ L GLAVF++PG++AQ+AIE + VFE+L+PF D +D LYR GAL+++ SMYLALLLKVD +DE S SQ +FA +L+AAH M L V++ +L SA
Sbjct: 66 SFLCVVETNFYGRLAFSTLLPLAILGGLAATHAIAKRNNRHSQVGMREATDKHLSIALFIVFATYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLVRERSSGTA--TPENLR-----PMKDLWEPYKPRRYFYELVECGRRIGLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPVDAGLYRSGALVVFYSMYLALLLKVDASDESSESQQVFAAVLVAAHVSMVLAVLLRSLLSA 340
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: D7G8S0_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S0_ECTSI) HSP 1 Score: 276 bits (707), Expect = 2.080e-87 Identity = 140/278 (50.36%), Postives = 187/278 (67.27%), Query Frame = 2
Query: 2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRHSTHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPARTGFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAHCGMALVVIIYA 835
S+SC+ ++NFY ATI P+ V GA A++Y + RNRHS M+ AK+KHLS+ +F++ ++YSSV + IFQTFVC+ +D+ + YLRADY L C T H+A M YAG+M VYPVGIPA +AWWL R+ +V V P F + + LWAPYK +RYY+EV+ECG R+ L GLA F+ P S+AQ AIE +L+ +F AV ++LSPF D D WLYR G I SMYLAL VDV+DE++ SQ +FA +LIAAH GM V+++ A
Sbjct: 73 SVSCIVDSNFYGCRFFATICPLVVFGAQAVTYTVSKSRNRHSPAGMQAAKSKHLSITLFIMFVVYSSVPFNIFQTFVCERLDTGMDYLRADYSLTCYTGVHKAMMVYAGLMIFVYPVGIPAFYAWWLLFIRHYLVKVGAP--NNFLERVPELDHLQPMRDLWAPYKPHRYYFEVVECGHRIALTGLAAFLLPNSAAQAAIEVVLAAIFVAVSDVLSPFVDPFDAWLYRIGGWITCFSMYLAL---VDVSDEDNQSQAVFAKVLIAAHAGMVAVIVVQA 345
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE) HSP 1 Score: 290 bits (743), Expect = 1.280e-84 Identity = 144/279 (51.61%), Postives = 191/279 (68.46%), Query Frame = 2
Query: 2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRHSTHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPARTGFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAHCGMALVVIIYAL 838
S +CV++TNFYDRL++ATIGP+ VLG L +Y A RNRH AMR + +HLSV +F++ ++Y++VSY IF+TFVCD +D +YLRADY L C T H A+ YAG+ LVYPVGIP F WWLF NR+ + D + +P ++ LW PYK + YYYEV+EC RR+ L G AVFIYP SSAQ+AI LL+ +F V EILSPFA ++MWLYR G +++ SMYLALLL+VDV+DE SQ +F+ +++ AH M LVV++ L
Sbjct: 745 SFACVYDTNFYDRLLMATIGPVLVLGLLGCTYVVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCIFGWWLFKNRHELKQEDREGQAELRPAAD----------LWEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVMAHVAMFLVVVVQGL 1013
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI) HSP 1 Score: 290 bits (741), Expect = 2.390e-84 Identity = 143/275 (52.00%), Postives = 190/275 (69.09%), Query Frame = 2
Query: 2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRHSTHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPARTGFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAHCGMALVVI 826
S +CV++TNFYDRL++ATIGP+ VLG L +Y A RNRH AMR + +HLSV +F++ ++Y++VSY IF+TFVCD +D +YLRADY L C T H A+ YAG+ LVYPVGIP F WWLF NR+ + D ++ +P ++ LW PYK + YYYEV+EC RR+ L G AVFIYP SSAQ+AI LL+ +F V EILSPFA ++MWLYR G +++ SMYLALLL+VDV+DE SQ +F+ +++ AH M LVV+
Sbjct: 764 SFACVYDTNFYDRLLMATIGPVLVLGLLGCTYLVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCVFGWWLFKNRHELKQEDRESQAELRPAAD----------LWEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVIAHVAMFLVVV 1028
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI) HSP 1 Score: 270 bits (691), Expect = 1.130e-77 Identity = 140/279 (50.18%), Postives = 188/279 (67.38%), Query Frame = 2
Query: 2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRHSTHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPARTGFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAHCGMALVVIIYAL 838
SL+CV +T+FYDRL+L TI P VLG L +Y AM V K++HLSV +F++ ++Y++VSY IF+TFVCD +D +YLR+DY L C T++H A+ YAG+M LVYPVGIP F WWLF +R+ + Q ER + + A LW PYK + YYYEV+EC RR+ L G AVFIYP SSAQ+AI LL+++F V E LSPFA ++MWLYR G +++ SMYLALLL+VDV+DE + SQ +F+ +L+ AH M LVV++ L
Sbjct: 769 SLACVCDTDFYDRLLLTTICPAVVLGLLGCTYL-----------AMGVVKHRHLSVALFIMFVIYATVSYTIFETFVCDPLDDGNSYLRSDYSLTCDTETHTAYRVYAGLMILVYPVGIPCVFGWWLFKHRHELK----------QEGRERRAVLKPAADLWEPYKPSTYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAIVFMVVSEFLSPFARPVEMWLYRTGHYVVFASMYLALLLRVDVSDERNQSQEVFSGVLVIAHAAMLLVVVLQGL 1026
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE) HSP 1 Score: 249 bits (635), Expect = 7.260e-71 Identity = 136/292 (46.58%), Postives = 189/292 (64.73%), Query Frame = 2
Query: 2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRHSTHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPARTGFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAHCGMALVVIIYALSSAFPRVRSFKIS 877
S SCV T+F+DRL++ATIGP+ VL LA+++ RN S A+R KNKHLS +F++ +YSSVS+ +FQTFVCD +D V+YLRADY L C T + AF YA +M VYP+GIPA FAW L +NR + D QP + LW YK +RYYYE+IE RR+VL G+AVF+ PGSSAQ+A+ LL+V+F + E LSPF +DM LYR+G ++ S+Y+ALLLKV+V++E S + + F +LI A+ MA+ +++ +F VR ++ S
Sbjct: 756 SYSCVVITDFFDRLLIATIGPVVVLALLALTFVVGRKRNIDSEAAVRAVKNKHLSAALFVMFFIYSSVSFTVFQTFVCDTLDDGVSYLRADYSLTCDTPRYGAFRGYAAVMVCVYPIGIPATFAWLLGSNRQDLQKADRDRLANLQPLGD----------LWEAYKPSRYYYEIIEYVRRIVLTGVAVFVLPGSSAQMAVVLLLAVVFLFISESLSPFTKKIDMALYRWGNGVVLASIYVALLLKVNVSEEGSETLSAFVVVLILANVCMAITLVV----QSFLLVREWRSS 1033
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Match: D7G021_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G021_ECTSI) HSP 1 Score: 234 bits (597), Expect = 3.850e-69 Identity = 125/269 (46.47%), Postives = 171/269 (63.57%), Query Frame = 2
Query: 2 SLSCVFETNFYDRLVLATIGPIAVLGALAISYQFAVIRNRH--STHAMRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLECSTDSHRAFMAYAGIMALVYPVGIPAAFAWWLFTNRYSIVNVDTPARTGFQPESERFSAVDAAKALWAPYKRNRYYYEVIECGRRLVLAGLAVFIYPGSSAQIAIEALLSVMFYAVFEILSPFADSLDMWLYRFGALIIYLSMYLALLLKVDVADEESHSQTIFAWLLIAAH 802
S SC+ +T+F+DRL+ T+GP+AVLG L ++ A +RNR+ S + KHLS+ +F+L +YSSVS IF TF C+ ++ V+YLRADYG C + H AF YAG+M LVYP+GIPA F WWL NR+ + + +P AKALW YK +Y+ +IEC RR+ L GL VFI P S+AQ+AI LL+ F + E+L PF ++ WLY G+ +I+ SMY ALLLKVDV++E S SQT F+ +LI +H
Sbjct: 29 SFSCLVKTDFFDRLLWKTLGPLAVLGVLQATHVIARLRNRNIPSDSVQLTVRRKHLSLAIFILFFVYSSVSRDIFLTFSCETLEDGVSYLRADYGFVCFSRRHVAFRVYAGVMVLVYPLGIPALFGWWLRRNRHDLRSPSRAENADLEP----------AKALWESYKGETWYFIIIECVRRIALTGLGVFINPNSAAQVAILLLLAFGFLVLSEVLDPFEKPIETWLYLSGSCVIFASMYAALLLKVDVSNENSESQTAFSAVLILSH 287 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155519.3640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig155519.3640.1 >prot_H-elongata_contig155519.3640.1 ID=prot_H-elongata_contig155519.3640.1|Name=mRNA_H-elongata_contig155519.3640.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp MRVAKNKHLSVVVFLLVILYSSVSYKIFQTFVCDFMDSEVAYLRADYGLEback to top mRNA from alignment at H-elongata_contig155519:412..1523+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig155519.3640.1 ID=mRNA_H-elongata_contig155519.3640.1|Name=mRNA_H-elongata_contig155519.3640.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1112bp|location=Sequence derived from alignment at H-elongata_contig155519:412..1523+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig155519:412..1523+ >mRNA_H-elongata_contig155519.3640.1 ID=mRNA_H-elongata_contig155519.3640.1|Name=mRNA_H-elongata_contig155519.3640.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig155519:412..1523+ (Himanthalia elongata Himel1 dioecious)back to top |