mRNA_H-elongata_contig15523.3614.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15523.3614.1
Unique NamemRNA_H-elongata_contig15523.3614.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15523.3614.1 vs. uniprot
Match: UPI001C9A9669 (E3 SUMO-protein ligase ZBED1-like n=2 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9A9669)

HSP 1 Score: 86.7 bits (213), Expect = 2.290e-18
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    7 NSLKWWLAHRDKYPTLQSVACVYLTVPATSGSSERVFSAAGNIVTKKRDRLSPENVNNLVFL 192
            N  +WW A  +KYP +  VA  YLT+PATS  SER FS AGNIVTKKR+RL PENVN LVFL
Sbjct:  414 NPFEWWKARTNKYPAISEVAKKYLTIPATSAMSERCFSCAGNIVTKKRNRLLPENVNTLVFL 475          
BLAST of mRNA_H-elongata_contig15523.3614.1 vs. uniprot
Match: UPI000B937505 (zinc finger BED domain-containing protein 1-like n=2 Tax=Aphidinae TaxID=133076 RepID=UPI000B937505)

HSP 1 Score: 81.6 bits (200), Expect = 3.600e-18
Identity = 40/65 (61.54%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 TTNSLKWWLAHRDKYPTLQSVACVYLTVPATSGSSERVFSAAGNIVTKKRDRLSPENVNNLVFLH 195
            T +  +WW     KYP +  +A  YLT+PATS SSER FS AGNIVT+KR  LSPENVN LVFLH
Sbjct:   56 TLDPKEWWKTRFSKYPVIGDLAKKYLTIPATSVSSERCFSTAGNIVTRKRASLSPENVNMLVFLH 120          
BLAST of mRNA_H-elongata_contig15523.3614.1 vs. uniprot
Match: A0A1A7ZCN3_NOTFU (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A7ZCN3_NOTFU)

HSP 1 Score: 78.6 bits (192), Expect = 1.600e-17
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 TTNSLKWWLAHRDKYPTLQSVACVYLTVPATSGSSERVFSAAGNIVTKKRDRLSPENVNNLVFLH 195
            +TN L+WW ++  ++P+L S+A  YL VPATS  SER+FS+AGNIV+KKR  LSPE+++ L F H
Sbjct:   30 STNPLQWWKSNEARFPSLASLAKSYLCVPATSTPSERLFSSAGNIVSKKRTSLSPEHIDMLTFFH 94          
BLAST of mRNA_H-elongata_contig15523.3614.1 vs. uniprot
Match: A0A2S2P4C5_SCHGA (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2P4C5_SCHGA)

HSP 1 Score: 78.2 bits (191), Expect = 2.660e-17
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:   16 KWWLAHRDKYPTLQSVACVYLTVPATSGSSERVFSAAGNIVTKKRDRLSPENVNNLVFLH 195
            +WW +H  KYP +  VA  +L++PATS SSER FS AGN+VT KR+ L+PENVN LVFL+
Sbjct:   39 EWWKSHEKKYPLVAKVAKKFLSIPATSVSSERCFSTAGNVVTPKRNCLAPENVNMLVFLY 98          
BLAST of mRNA_H-elongata_contig15523.3614.1 vs. uniprot
Match: E2BS40_HARSA (Zinc finger BED domain-containing protein 1 (Fragment) n=2 Tax=Harpegnathos saltator TaxID=610380 RepID=E2BS40_HARSA)

HSP 1 Score: 77.0 bits (188), Expect = 3.100e-17
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 1
Query:   13 LKWWLAHRDKYPTLQSVACVYLTVPATSGSSERVFSAAGNIVTKKRDRLSPENVNNLVFLH 195
            LKWW AH + YP + ++  VYL + A+S SSERVFS AGNIVT KR+ LS ENVN L+FL+
Sbjct:    3 LKWWKAHENLYPMIAALTKVYLAILASSASSERVFSTAGNIVTAKRNCLSTENVNLLIFLN 63          
BLAST of mRNA_H-elongata_contig15523.3614.1 vs. uniprot
Match: UPI001113C14C (zinc finger BED domain-containing protein 1-like n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=UPI001113C14C)

HSP 1 Score: 77.8 bits (190), Expect = 5.280e-17
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   16 KWWLAHRDKYPTLQSVACVYLTVPATSGSSERVFSAAGNIVTKKRDRLSPENVNNLVFLH 195
            +WW +H  KYP +  +   YL++PATS SSER FS AGN+VT KR+ L+PENVN LVFL+
Sbjct:   56 EWWKSHEKKYPLIAELVKKYLSIPATSVSSERCFSTAGNVVTSKRNCLAPENVNMLVFLY 115          
BLAST of mRNA_H-elongata_contig15523.3614.1 vs. uniprot
Match: UPI0005F55F89 (zinc finger BED domain-containing protein 1-like n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F55F89)

HSP 1 Score: 80.1 bits (196), Expect = 1.490e-16
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 1
Query:   13 LKWWLAHRDKYPTLQSVACVYLTVPATSGSSERVFSAAGNIVTKKRDRLSPENVNNLVFLH 195
            L+WW    DK+P L  +A  YL++PATS S+ER FS AGNIVT KR+ LSPENVN LVFL+
Sbjct:  209 LEWWKTRADKFPALAILARKYLSIPATSASAERTFSTAGNIVTPKRNCLSPENVNMLVFLY 269          
BLAST of mRNA_H-elongata_contig15523.3614.1 vs. uniprot
Match: UPI000DC12F9E (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC12F9E)

HSP 1 Score: 76.3 bits (186), Expect = 2.360e-16
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    7 NSLKWWLAHRDKYPTLQSVACVYLTVPATSGSSERVFSAAGNIVTKKRDRLSPENVNNLVFLH 195
            ++L+WW  H  KYP + ++A  YL +PATS SSER FS AGNIV+ KR  L+PE VN L+FL+
Sbjct:   54 DALEWWKTHTSKYPLIVALAMKYLGIPATSVSSERCFSTAGNIVSAKRSCLAPETVNMLIFLY 116          
BLAST of mRNA_H-elongata_contig15523.3614.1 vs. uniprot
Match: A0A8B8G026_9HEMI (zinc finger BED domain-containing protein 1-like n=2 Tax=Aphididae TaxID=27482 RepID=A0A8B8G026_9HEMI)

HSP 1 Score: 79.3 bits (194), Expect = 3.050e-16
Identity = 39/65 (60.00%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 TTNSLKWWLAHRDKYPTLQSVACVYLTVPATSGSSERVFSAAGNIVTKKRDRLSPENVNNLVFLH 195
            T +  +WW     KYP +  +A  YLT+PA S SSER FS AGNIVT+KR  LSPENVN LVFLH
Sbjct:  207 TLDPKEWWKTRFSKYPVIGDLAKKYLTIPAISVSSERCFSTAGNIVTRKRASLSPENVNMLVFLH 271          
BLAST of mRNA_H-elongata_contig15523.3614.1 vs. uniprot
Match: UPI0018935EA0 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI0018935EA0)

HSP 1 Score: 80.5 bits (197), Expect = 3.570e-16
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    4 TNSLKWWLAHRDKYPTLQSVACVYLTVPATSGSSERVFSAAGNIVTKKRDRLSPENVNNLVFLH 195
            +++LKWW  H  K+P L  +A  Y+ +PA+S SSERVFS+AGNI+T KR  L PENV++LVFL+
Sbjct:  426 SDALKWWKDHESKFPRLAELAKKYMCIPASSASSERVFSSAGNIITAKRSSLLPENVSSLVFLY 489          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15523.3614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C9A96692.290e-1866.13E3 SUMO-protein ligase ZBED1-like n=2 Tax=Colletes... [more]
UPI000B9375053.600e-1861.54zinc finger BED domain-containing protein 1-like n... [more]
A0A1A7ZCN3_NOTFU1.600e-1755.38Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
A0A2S2P4C5_SCHGA2.660e-1760.00Zinc finger BED domain-containing protein 1 (Fragm... [more]
E2BS40_HARSA3.100e-1760.66Zinc finger BED domain-containing protein 1 (Fragm... [more]
UPI001113C14C5.280e-1758.33zinc finger BED domain-containing protein 1-like n... [more]
UPI0005F55F891.490e-1662.30zinc finger BED domain-containing protein 1-like n... [more]
UPI000DC12F9E2.360e-1655.56zinc finger BED domain-containing protein 1-like n... [more]
A0A8B8G026_9HEMI3.050e-1660.00zinc finger BED domain-containing protein 1-like n... [more]
UPI0018935EA03.570e-1656.25E3 SUMO-protein ligase ZBED1-like n=1 Tax=Rhipicep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15523contigH-elongata_contig15523:851..1045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score78.2
Seed ortholog evalue1.6e-12
Seed eggNOG ortholog7029.ACYPI072262-PA
EggNOG free text desc.Zinc finger BED domain-containing protein
EggNOG OGs39SKR@33154,3BBS9@33208,3CUF3@33213,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929915.035555-CDS-H-elongata_contig15523:850..10451622929915.035555-CDS-H-elongata_contig15523:850..1045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15523 851..1045 -
1691679206.7997146-CDS-H-elongata_contig15523:850..10451691679206.7997146-CDS-H-elongata_contig15523:850..1045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15523 851..1045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15523.3614.1prot_H-elongata_contig15523.3614.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15523 851..1045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15523.3614.1

>prot_H-elongata_contig15523.3614.1 ID=prot_H-elongata_contig15523.3614.1|Name=mRNA_H-elongata_contig15523.3614.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
TTNSLKWWLAHRDKYPTLQSVACVYLTVPATSGSSERVFSAAGNIVTKKR
DRLSPENVNNLVFLH
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mRNA from alignment at H-elongata_contig15523:851..1045-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15523.3614.1 ID=mRNA_H-elongata_contig15523.3614.1|Name=mRNA_H-elongata_contig15523.3614.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig15523:851..1045- (Himanthalia elongata Himel1 dioecious)
ACTACCAATTCGCTTAAGTGGTGGTTGGCGCACCGCGATAAGTACCCCAC TTTGCAAAGCGTCGCGTGTGTGTATCTCACTGTACCGGCAACGTCCGGAA GCTCTGAGCGCGTGTTCTCTGCCGCGGGCAACATCGTAACAAAGAAGCGG GACAGGCTTTCACCCGAGAATGTCAACAACTTGGTTTTCCTTCAC
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Coding sequence (CDS) from alignment at H-elongata_contig15523:851..1045-

>mRNA_H-elongata_contig15523.3614.1 ID=mRNA_H-elongata_contig15523.3614.1|Name=mRNA_H-elongata_contig15523.3614.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig15523:851..1045- (Himanthalia elongata Himel1 dioecious)
ACTACCAATTCGCTTAAGTGGTGGTTGGCGCACCGCGATAAGTACCCCAC
TTTGCAAAGCGTCGCGTGTGTGTATCTCACTGTACCGGCAACGTCCGGAA
GCTCTGAGCGCGTGTTCTCTGCCGCGGGCAACATCGTAACAAAGAAGCGG
GACAGGCTTTCACCCGAGAATGTCAACAACTTGGTTTTCCTTCACACTAC
CAATTCGCTTAAGTGGTGGTTGGCGCACCGCGATAAGTACCCCACTTTGC
AAAGCGTCGCGTGTGTGTATCTCACTGTACCGGCAACGTCCGGAAGCTCT
GAGCGCGTGTTCTCTGCCGCGGGCAACATCGTAACAAAGAAGCGGGACAG
GCTTTCACCCGAGAATGTCAACAACTTGGTTTTCCTTCAC
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