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Homology
BLAST of mRNA_H-elongata_contig15462.3589.1 vs. uniprot
Match: D7FUV4_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV4_ECTSI) HSP 1 Score: 280 bits (717), Expect = 9.500e-84 Identity = 179/313 (57.19%), Postives = 204/313 (65.18%), Query Frame = 1
Query: 31 LQHKLSQPIAVSGRMTRTATKVTPRLEFSTKGGGAGGKTPGSGXXXXXXXXXXXTGSLMSPSESRAKRGPTTAREGFGMPNRRVFKSPRTSLDRDATPSRMRTPILDSRRDRXXXXXXXXXXXXRVHAQRIFTVSDEEIEQLVKTRPKKGTSKWDYKARLQSQNELLTKLRATLETMHQQKRLFRDACIDTEAALKAEMRKVNLRCEDVERDHVELLDENARFQSMEAGLKADLKLAAEERTVLRAENEKLHTKLEAMVADGQSRTNEAETLLSMAREKLSLAESRASETLTLQEKEWEYRMNSATSDALKQV 969
L HKLSQPIAVSGRMTRTATKV PRLEFS++ A T G G S+ SPS R KR G RRV KSPRTS+DRD TP R RTP + R RVHAQRIFTVSD+++E ++KT+ K G SKWDYK R+Q+QNELL +LRA L TM QQK+ F+DACIDTEAALKAEMRKVN RCEDVERDHVELLDENAR+QS+EAGLKADLKLA EER +LRAENEKL TKLEA VADG L +E+EWE R++SATS A ++V
Sbjct: 292 LSHKLSQPIAVSGRMTRTATKVKPRLEFSSRAAAA---TGGGGSAL----------SMTSPSSGRTKRNAGAP----GSATRRVHKSPRTSIDRDYTPLRSRTPGSEGR------------GGIRVHAQRIFTVSDDDVEDMLKTKVK-GASKWDYKTRIQNQNELLAQLRAMLNTMLQQKQRFKDACIDTEAALKAEMRKVNSRCEDVERDHVELLDENARYQSVEAGLKADLKLAKEERALLRAENEKLATKLEAKVADGXXXXXXXXXXXXXXXXXXXXXXXXXXMALAQKEQEWETRIDSATSGAHQEV 574
BLAST of mRNA_H-elongata_contig15462.3589.1 vs. uniprot
Match: A0A6H5JJH6_9PHAE (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH6_9PHAE) HSP 1 Score: 268 bits (686), Expect = 5.920e-78 Identity = 179/330 (54.24%), Postives = 205/330 (62.12%), Query Frame = 1
Query: 31 LQHKLSQPIAVSGRMTRTATKVTPRLEFSTKGGGAGGKTPGSGXXXXXXXXXXXTGSLMSPSESRAKRGPTTAREGFGMPNRRVFKSPRTSLDRDATPSRMRTPILDSRRDRXXXXXXXXXXXXRVHAQRIFTVSDEEIEQLVKTRPKKGTSKWDYKARLQSQNELLTKLRATLETMHQQKRLFRDACIDTEAALKAEMRKVNLRCEDVERDHVELLDENARFQSMEAGLKADLKLAAEERTVLRAENEKLHTK-----------------LEAMVADGQSRTNEAETLLSMAREKLSLAESRASETLTLQEKEWEYRMNSATSDALKQV 969
L HKLSQPIAVSGRMTRTATKV PRLEFS++ A G + GS S+ SPS R KR G RRV KSPRTS+DRD TP R RTP + R RVHAQRIFTVSD+++E ++KT+ K G SKWDYK R+Q+QNELL +LRA L TM QQK+ F+DACIDTEAALKAEMRKVN RCEDVERDHVELLDENAR+QS+EAGLKADLKLA EER +LRAENEKL TK LEA VADG L +E+EWE R++SATS A ++V
Sbjct: 295 LSHKLSQPIAVSGRMTRTATKVKPRLEFSSRAVAAAG-SGGSAL------------SMTSPSSGRTKRNAGAP----GSATRRVHKSPRTSIDRDYTPLRSRTPGSEGR------------GGIRVHAQRIFTVSDDDVEDMLKTKVK-GASKWDYKTRIQNQNELLAQLRAMLNTMLQQKQRFKDACIDTEAALKAEMRKVNSRCEDVERDHVELLDENARYQSVEAGLKADLKLAKEERALLRAENEKLATKADALRDGLSRAEGDLLKLEAKVADGXXXXXXXXXXXXXXXXXXXXXXXXXXMALAQKEQEWETRIDSATSGAHQEV 594
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 288.5 |
| Seed ortholog evalue | 3.9e-75 |
| Seed eggNOG ortholog | 2880.D7FUV4 |
| KEGG ko | ko:K07936,ko:K10406 |
| KEGG Pathway | ko03008,ko03013,ko05166,ko05169,map03008,map03013,map05166,map05169 |
| EggNOG free text desc. | microtubule motor activity |
| EggNOG OGs | COG5059@1,KOG0239@2759 |
| COG Functional cat. | Z |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko03009,ko03016,ko03019,ko03036,ko04031,ko04147,ko04812 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Kinesin motor domain |
| Ec32 ortholog | Ec-26_004350.2 |
| Exons | 6 |
| Model size | 969 |
| Cds size | 969 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929912.8120434-CDS-H-elongata_contig15462:3627..3804 | 1622929912.8120434-CDS-H-elongata_contig15462:3627..3804 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15462 3628..3804 - |
| 1691679205.8606443-CDS-H-elongata_contig15462:3627..3804 | 1691679205.8606443-CDS-H-elongata_contig15462:3627..3804 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15462 3628..3804 - |
| 1622929912.833173-CDS-H-elongata_contig15462:4252..4362 | 1622929912.833173-CDS-H-elongata_contig15462:4252..4362 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15462 4253..4362 - |
| 1691679205.8726015-CDS-H-elongata_contig15462:4252..4362 | 1691679205.8726015-CDS-H-elongata_contig15462:4252..4362 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15462 4253..4362 - |
| 1622929912.848211-CDS-H-elongata_contig15462:4849..4913 | 1622929912.848211-CDS-H-elongata_contig15462:4849..4913 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15462 4850..4913 - |
| 1691679205.8826327-CDS-H-elongata_contig15462:4849..4913 | 1691679205.8826327-CDS-H-elongata_contig15462:4849..4913 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15462 4850..4913 - |
| 1622929912.8648648-CDS-H-elongata_contig15462:5177..5306 | 1622929912.8648648-CDS-H-elongata_contig15462:5177..5306 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15462 5178..5306 - |
| 1691679205.8958554-CDS-H-elongata_contig15462:5177..5306 | 1691679205.8958554-CDS-H-elongata_contig15462:5177..5306 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15462 5178..5306 - |
| 1622929912.8776228-CDS-H-elongata_contig15462:5821..5997 | 1622929912.8776228-CDS-H-elongata_contig15462:5821..5997 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15462 5822..5997 - |
| 1691679205.9065561-CDS-H-elongata_contig15462:5821..5997 | 1691679205.9065561-CDS-H-elongata_contig15462:5821..5997 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15462 5822..5997 - |
| 1622929912.8988035-CDS-H-elongata_contig15462:6962..7275 | 1622929912.8988035-CDS-H-elongata_contig15462:6962..7275 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15462 6963..7275 - |
| 1691679205.9147902-CDS-H-elongata_contig15462:6962..7275 | 1691679205.9147902-CDS-H-elongata_contig15462:6962..7275 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig15462 6963..7275 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15462.3589.1 >prot_H-elongata_contig15462.3589.1 ID=prot_H-elongata_contig15462.3589.1|Name=mRNA_H-elongata_contig15462.3589.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=323bp
MQSVWCASCVLQHKLSQPIAVSGRMTRTATKVTPRLEFSTKGGGAGGKTP GSGGVAGGKGGGAGTGSLMSPSESRAKRGPTTAREGFGMPNRRVFKSPRT SLDRDATPSRMRTPILDSRRDRDRDRGGGGGVGVRVHAQRIFTVSDEEIE QLVKTRPKKGTSKWDYKARLQSQNELLTKLRATLETMHQQKRLFRDACID TEAALKAEMRKVNLRCEDVERDHVELLDENARFQSMEAGLKADLKLAAEE RTVLRAENEKLHTKLEAMVADGQSRTNEAETLLSMAREKLSLAESRASET LTLQEKEWEYRMNSATSDALKQV back to topmRNA from alignment at H-elongata_contig15462:3628..7275- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig15462.3589.1 ID=mRNA_H-elongata_contig15462.3589.1|Name=mRNA_H-elongata_contig15462.3589.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3648bp|location=Sequence derived from alignment at H-elongata_contig15462:3628..7275- (Himanthalia elongata Himel1 dioecious) ATGCAATCAGTGTGGTGTGCCTCGTGTGTGCTGCAGCACAAGCTGTCACA
GCCGATTGCCGTGTCGGGGCGGATGACTCGGACGGCGACGAAGGTTACGC
CCCGCCTGGAGTTCTCCACCAAGGGAGGGGGAGCGGGAGGCAAGACCCCT
GGGAGCGGAGGTGTGGCGGGGGGCAAGGGGGGCGGCGCCGGCACTGGGAG
CTTGATGTCGCCTTCGGAGTCGAGGGCGAAGCGTGGTCCTACTACGGCCA
GGGAGGGATTCGGAATGCCCAATCGGCGGGTGTTCAAGAGCCCCCGGACA
TCGCTTGATCGGGGTGAGCTCAAGAGTTGGAGAGACGAGAACGCCGTCAC
CCTTCGCAGGCGTTTTTCACCGTACCGTTTATACCGCACGATACCGTGGG
ATCGCGTTTCCATGTCGGTGTTTGTAAGAGACCGCTCCGGCGGGAGAAAA
TGTTCTTCGTGTGCATAGATTCCCCCCCCCTCCCCGAAGAAATCCCTCCA
GACAAACGTGCATGTAAATGTTTATAGTTCGTGCTCTCTTGAAGATTTGC
GCCCTTTAGGCCTACAGTCGGGGCCGGCCGTTCGATTTATCGATTTATTG
ATTGGTGAGAACGGATGGGACGGCAATGTGTGCTTGCCCCCTTTTGATTG
GTGAGAACGGTGGCCAGAACACTACGTGAAGCATCGTTTTCAGTGTGTGT
TTATGTAAAAACAGTTGAAAACCTCCCATTATTGCTACAATGTCAATTCC
TTTGAGCAAAAAGAGGCAAAAAACCCCAAAAAACCCTTGTGAAAAAGGCG
GGGGGGAAATAAAACCGGATATTTTTTTATGCCTTCGACAAGAGAAAAAA
TAGAGGTTGGTAGAGATTTGGTGTCATCGTTTGGCGCCTCGTACCCACAT
GAACAACAGAGGGACGCGAGGATGGGAAATTGCTGTTGCTCGTGCTGTTG
TAGATCCTTATAGAAGTAGTATAATATAATAGTGATATCTTAAACAAAAA
CCTGTTGTATTCACCCGCGTCAAAAACCCGGCGATTCTCTCGGTCGCGTG
GCAAACCGAATTGAACGGAACGGCCCGTTCCGTTCCGTTCCGTCCCTCTT
TCTCTCTCTCTTTATGCTCTCCTTTCAATATCGTCATCCGTAGGAAGCGA
TGATAATATATGTAGTAAAAGTATACACCCGCACACAAAAATATAGTGCG
TATGGTCGTATGTCTTGCACCACTTGTCGTGGGTGTCAAATGACGTCACG
TCAATGCGCCAACCCCGTCGTCTTGCAGATGCCACCCCGTCGCGAATGCG
GACTCCGATCCTGGATTCTCGCCGCGATCGTGATCGTGATCGCGGGGGTG
GCGGAGGGGTAGGCGTACGGGTTCACGCCCAGCGTATCTTCACGGTTAGC
GACGAGGAGATCGAGCAGCTGGTGAAGACTAGACCGAAGAAGGGGACGAG
TAAGGTACGATTGTAATGATTACTGCAGGCATGACTGTATGGGGGACGGG
GGACTGTGAAAAATAAAATAAAAGTTTTTTGTTTTTTGTTTTTATCCTTG
CCCGCAATGGCCAAAGTTGTTGCTCGGCGGAAAAACCCGAGGTGGATCGA
CCTCGATGACGGGCCCTCTCCGATTTTCGTGACTTGAAGCTTCTTCCCAA
CGCAACCCGACTCAACCGAACCCAAGCCACCGTTTCCCCGCCGAAGGCGT
GTGACACAGCAGCGGTAGACGTTTGTGGGGAGTGTGACCTGCGAGGTGGT
TCAAACCGCGCCCATGTTTTGGCCGCGGATCGCTCAAGATCAACCTCCCA
CGAGAGACACAAAGCCTATCTGGTAGACTATAATGTCTCGATTTGTTTGG
CGCACGGTGGGTTTCTTATGTTTGTTTGTTTGGTTGGTTGGTTTTTTGTT
TCGTCTGTCCGTTGCCCTCTCCTCGCTAATCCATATATATATATATAATG
TGTATACCGCGCGTAGCAGTGGGACTACAAGGCGCGGCTCCAGAGCCAGA
ATGAGCTCCTGACGAAGCTCCGCGCGACGCTCGAAACCATGCATCAGCAG
AAGCGACTCTTTCGGGATGCGTGCATCGACACAGAGGCAGCGCTGAAGGT
GCGCGAGGGGCAGGGGTGAAGGTGGGGCCCCTCGAGTTTTTTGAGGGGGG
GGGGGAAGGGGGGAGGGCGGGAAATAAGGGGGGGGGAAATGCCTCCACGG
TTTTTGCAAACCCTCCATGCTCGAGCTCAAGCTTTGGCCGCGTCGATATT
CGCCATGTTGTCTTTCCCTATGTTTCGAACCAGCATATGACTCCCATTTC
CTGAGAAACAAAATGGGTGGAGTTGCTCGTGGTTATTGGGATGTTTTTTC
TTAACCTCTCAGGCGGAAATGCGGAAGGTCAACTTGCGGTGCGAAGATGT
GGAGAGGGACCACGTTGAGCTGCTAGGTGCGGTAGGAGGGTATGGTGGAG
AAACGGCAGGGATTTACGCCGCGCGTGTCGTTGCCCATCGTGCCCTACAG
CGGAGTGGAAATATTATGCAAATTTATGAGGGGTAAATAATACTCTTTGA
GTAGATAGATCGGATCGTAAGCACGCGCACTCAGTCTTCTTCGCTGAAGG
GGTTTCCTGCGCGCTAAGTCTCCTGTTCCGTTTTCATCAGTCCCAAGAAT
ACTTGGAAGGCGTGTACAAGTTTTTTATAAGTGCAAGGCGTCTACGCGAC
ACTATTTCACGTTGCTTACTCTCCGCCAAGCCAAGCCAAGCCGTGCTCGC
TTTTCTCCCGAGAAAAACGCGCATCGCCCGCCCCCCGCCCCCCCCCCCCA
ACCCCCCCCCGCCGCCCCACCNNNNNNNNNNGGGGCTGGAGTTCACACGG
GTGCTCTTCCCACCTAACCCCCCCCCCCCCCCCCCCCCCCCCCCCAAATC
CCCCCTGGGCTAGATGAAAATGCCAGGTTCCAGTCTATGGAAGCAGGACT
GAAGGCGGACTTAAAGCTGGCGGCTGAAGAGCGGACCGTGCTCCGCGCCG
AGAACGAAAAGCTCCATACAAAGGTAGCCAGCCTTGCGTAGGCCATCGAG
TTTCTCGGGTTTCGAGATTCGGGCTCTCCCGCCCTGCTGTCGTACGAGGT
AGCCTCCTGTTTTCTTGTCCACGATGGAACGGGTCGGGTTAGACCTGACT
AGACCGAACTGGACCGAACCGGACCGAACCGAAGTCCTCGGATGGGATAA
TCTGGGGGATTTGGGCGTCGGTACGCGATATATCCCGTAGCCTCCCTCAG
GCAACCCTGTGGCGCCTTGTATGTGTGTGTGTTTTCCCGCGCATTTGTGT
ATTTTAACCATCTAAGCCATATCCGCCTTTGTCCTATTATCCCTTCCTAC
ATTAATGGTACGATTTTATTTTCGTCGCGATGCCGAATGGACCAACGGCC
GCCCAAAACCTGACGAACAGACGGACGCGCTTCGCGAAGAGCTTAACCGC
ACCCAGGGCTCTGCCCTAAAGCTGGAGGCGATGGTGGCGGACGGACAGTC
TCGCACGAACGAGGCAGAGACGCTACTGTCCATGGCCAGGGAGAAGCTCT
CGTTGGCCGAGTCGAGAGCCAGCGAGACCCTGACTCTCCAGGAAAAGGAG
TGGGAGTATCGCATGAACTCGGCAACTTCCGATGCGCTGAAACAGGTG back to topCoding sequence (CDS) from alignment at H-elongata_contig15462:3628..7275- >mRNA_H-elongata_contig15462.3589.1 ID=mRNA_H-elongata_contig15462.3589.1|Name=mRNA_H-elongata_contig15462.3589.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1938bp|location=Sequence derived from alignment at H-elongata_contig15462:3628..7275- (Himanthalia elongata Himel1 dioecious) ATGCAATCAGTGTGGTGTGCCTCGTGTGTGCTGCAGCACAAGCTGTCACA GCCGATTGCCGTGTCGGGGCGGATGACTCGGACGGCGACGAAGGTTACGC CCCGCCTGGAGTTCTCCACCAAGGGAGGGGGAGCGGGAGGCAAGACCCCT GGGAGCGGAGGTGTGGCGGGGGGCAAGGGGGGCGGCGCCGGCACTGGGAG CTTGATGTCGCCTTCGGAGTCGAGGGCGAAGCGTGGTCCTACTACGGCCA GGGAGGGATTCGGAATGCCCAATCGGCGGGTGTTCAAGAGCCCCCGGACA TCGCTTGATCGGGATGCAATCAGTGTGGTGTGCCTCGTGTGTGCTGCAGC ACAAGCTGTCACAGCCGATTGCCGTGTCGGGGCGGATGACTCGGACGGCG ACGAAGGTTACGCCCCGCCTGGAGTTCTCCACCAAGGGAGGGGGAGCGGG AGGCAAGACCCCTGGGAGCGGAGGTGTGGCGGGGGGCAAGGGGGGCGGCG CCGGCACTGGGAGCTTGATGTCGCCTTCGGAGTCGAGGGCGAAGCGTGGT CCTACTACGGCCAGGGAGGGATTCGGAATGCCCAATCGGCGGGTGTTCAA GAGCCCCCGGACATCGCTTGATCGGGATGCCACCCCGTCGCGAATGCGGA CTCCGATCCTGGATTCTCGCCGCGATCGTGATCGTGATCGCGGGGGTGGC GGAGGGGTAGGCGTACGGGTTCACGCCCAGCGTATCTTCACGGTTAGCGA CGAGGAGATCGAGCAGCTGGTGAAGACTAGACCGAAGAAGGGGACGAGTA AGATGCCACCCCGTCGCGAATGCGGACTCCGATCCTGGATTCTCGCCGCG ATCGTGATCGTGATCGCGGGGGTGGCGGAGGGGTAGGCGTACGGGTTCAC GCCCAGCGTATCTTCACGGTTAGCGACGAGGAGATCGAGCAGCTGGTGAA GACTAGACCGAAGAAGGGGACGAGTAAGTGGGACTACAAGGCGCGGCTCC AGAGCCAGAATGAGCTCCTGACGAAGCTCCGCGCGACGCTCGAAACCATG CATCAGCAGAAGCGACTCTTTCGGGATGCGTGCATCGACACAGAGGCAGC GCTGAAGTGGGACTACAAGGCGCGGCTCCAGAGCCAGAATGAGCTCCTGA CGAAGCTCCGCGCGACGCTCGAAACCATGCATCAGCAGAAGCGACTCTTT CGGGATGCGTGCATCGACACAGAGGCAGCGCTGAAGGCGGAAATGCGGAA GGTCAACTTGCGGTGCGAAGATGTGGAGAGGGACCACGTTGAGCTGCTAG GCGGAAATGCGGAAGGTCAACTTGCGGTGCGAAGATGTGGAGAGGGACCA CGTTGAGCTGCTAGATGAAAATGCCAGGTTCCAGTCTATGGAAGCAGGAC TGAAGGCGGACTTAAAGCTGGCGGCTGAAGAGCGGACCGTGCTCCGCGCC GAGAACGAAAAGCTCCATACAAAGATGAAAATGCCAGGTTCCAGTCTATG GAAGCAGGACTGAAGGCGGACTTAAAGCTGGCGGCTGAAGAGCGGACCGT GCTCCGCGCCGAGAACGAAAAGCTCCATACAAAGCTGGAGGCGATGGTGG CGGACGGACAGTCTCGCACGAACGAGGCAGAGACGCTACTGTCCATGGCC AGGGAGAAGCTCTCGTTGGCCGAGTCGAGAGCCAGCGAGACCCTGACTCT CCAGGAAAAGGAGTGGGAGTATCGCATGAACTCGGCAACTTCCGATGCGC TGAAACAGGTGCTGGAGGCGATGGTGGCGGACGGACAGTCTCGCACGAAC GAGGCAGAGACGCTACTGTCCATGGCCAGGGAGAAGCTCTCGTTGGCCGA GTCGAGAGCCAGCGAGACCCTGACTCTCCAGGAAAAGGAGTGGGAGTATC GCATGAACTCGGCAACTTCCGATGCGCTGAAACAGGTG back to top
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