prot_H-elongata_contig153317.3520.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig153317.3520.1
Unique Nameprot_H-elongata_contig153317.3520.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length84
Homology
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6H5KLY3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY3_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 7.050e-11
Identity = 31/83 (37.35%), Postives = 54/83 (65.06%), Query Frame = 0
Query:    2 ERQWKMVLKIIQYLLSNKYLGLTFERGSGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 84
            +R W  + KI+ YL   +YLG+T++RGSG  ++++ D++YA+   D RSVSG+A  +   +V      Q +++L +TE +YI+
Sbjct:  177 KRHWDAIQKILGYLTGTRYLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKMQTIVSLYSTEAEYIA 258          
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6H5JMV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV5_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.180e-10
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 0
Query:    5 WKMVLKIIQYLLSNKYLGLTFERG--SGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 84
            WK  L I+ Y+    ++G+ FERG  +G  + ++ D++Y  KA + RSVSG  +I     V W   TQ+ +ALSTTE  Y++
Sbjct:   94 WKAALGILGYVRRTSWMGIAFERGVVTGMSVQVFVDADYTSKATEHRSVSGGRVICGGGCVTWFSRTQKCVALSTTETQYVA 175          
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6H5L8G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G9_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.410e-10
Identity = 31/82 (37.80%), Postives = 51/82 (62.20%), Query Frame = 0
Query:    5 WKMVLKIIQYLLSNKYLGLTFERGSGFEMS--LWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 84
            WK   K++ YLL   +L L F+R S  ++   ++ D+++A KA D RSVSG  + +   LV W+  TQ+ +A ST+E +Y++
Sbjct:   65 WKAAPKVLNYLLGTAHLSLNFKRDSSVDVGTLVYVDADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLA 146          
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.540e-10
Identity = 32/82 (39.02%), Postives = 51/82 (62.20%), Query Frame = 0
Query:    5 WKMVLKIIQYLLSNKYLGLTFERGSGFEMS--LWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 84
            WK   KI+ YLL   +L L F+R S  ++   ++ D+++A KA D RSVSG  + +   LV W+  TQ+ +A ST+E +Y++
Sbjct:  494 WKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVDADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLA 575          
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6L2PC32_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2PC32_TANCI)

HSP 1 Score: 63.5 bits (153), Expect = 7.570e-10
Identity = 30/85 (35.29%), Postives = 54/85 (63.53%), Query Frame = 0
Query:    2 ERQWKMVLKIIQYLLSNKYLGLTFE--RGSGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 84
            +  W+ V  I++YL     +GL +E  RG+  +++ + DS+YA+  N  RS++G A +++  +V W  + Q V+ALSTTE +Y++
Sbjct: 1785 KNHWEAVKWILKYLRGTANVGLVYETNRGNYVDVTCFVDSDYAKDPNKGRSITGYAFLVHGCVVSWKEMLQHVVALSTTEVEYMA 1869          
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6H5JW47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW47_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 8.610e-10
Identity = 31/82 (37.80%), Postives = 50/82 (60.98%), Query Frame = 0
Query:    5 WKMVLKIIQYLLSNKYLGLTFERGSGFEMS--LWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 84
            WK   KI+ YLL   +L L F+R S  ++   ++  +++A KA D RSVSG  + +   LV W+  TQ+ +A ST+E +Y++
Sbjct:   48 WKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVAADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLA 129          
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A225UQG5_9STRA (Retrovirus-related pol Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UQG5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.570e-9
Identity = 28/83 (33.73%), Postives = 54/83 (65.06%), Query Frame = 0
Query:    2 ERQWKMVLKIIQYLLSNKYLGLTFERGSGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 84
            E  W   +K+++YLL  K + +T +   G E++ ++D+++A   +D RSVSG+ +++  A V W   +Q+ +ALS+TE +Y++
Sbjct:  157 EAHWNAGIKVVRYLLKTKKVAITSDGLLGTELTAYSDADWAGNRDDRRSVSGMVLMMCDAPVVWRSTSQKTVALSSTEAEYMA 239          
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A5B6VMY0_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6VMY0_9ROSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.990e-9
Identity = 28/75 (37.33%), Postives = 46/75 (61.33%), Query Frame = 0
Query:   10 KIIQYLLSNKYLGLTFERGSGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 84
            ++++YL      G+ +++G   EM  +TDS+YAE   D++S SG A ++    V WS   QR+I LSTTE  +++
Sbjct:   72 RVLRYLKGTTDYGVFYKKGGASEMVAYTDSDYAEDKEDSKSTSGYAFMMCGGAVAWSSRKQRIITLSTTEAKFVA 146          
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6L2JGK7_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2JGK7_TANCI)

HSP 1 Score: 61.2 bits (147), Expect = 4.800e-9
Identity = 30/85 (35.29%), Postives = 53/85 (62.35%), Query Frame = 0
Query:    2 ERQWKMVLKIIQYLLSNKYLGLTF--ERGSGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 84
            +  W+ V  I++YL     +GL +   RG+  +++ + +SNYA+  N  RS+SG A +++  +V W  + Q V+ALSTTE +Y++
Sbjct:  687 KNHWEAVKWILKYLRGTINVGLVYGTNRGNHVDVTSFVNSNYAKDPNKGRSISGYAFLVHGYVVSWKAMLQHVVALSTTEAEYMA 771          
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A5N6LXA4_9ASTR (PI-PLC Y-box domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LXA4_9ASTR)

HSP 1 Score: 60.5 bits (145), Expect = 8.870e-9
Identity = 27/75 (36.00%), Postives = 47/75 (62.67%), Query Frame = 0
Query:   10 KIIQYLLSNKYLGLTFERGSGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 84
            +I++Y+ +    GLT+ R +  ++ ++ DS+YA   +D +S SG   IL  A V WS   Q ++ALS+TE +Y++
Sbjct:  446 RILRYVKATYDYGLTYARNASLKLKVYMDSDYARDVDDRKSTSGYVCILSNAAVSWSSQKQEIVALSSTEAEYVA 520          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLY3_9PHAE7.050e-1137.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JMV5_9PHAE1.180e-1039.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8G9_9PHAE1.410e-1037.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPV1_9PHAE1.540e-1039.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6L2PC32_TANCI7.570e-1035.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JW47_9PHAE8.610e-1037.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A225UQG5_9STRA1.570e-933.73Retrovirus-related pol Polyprotein n=1 Tax=Phytoph... [more]
A0A5B6VMY0_9ROSI1.990e-937.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A6L2JGK7_TANCI4.800e-935.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6LXA4_9ASTR8.870e-936.00PI-PLC Y-box domain-containing protein n=1 Tax=Mik... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 50..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153317contigH-elongata_contig153317:1075..1326 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153317.3520.1mRNA_H-elongata_contig153317.3520.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig153317 1075..1329 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig153317.3520.1 ID=prot_H-elongata_contig153317.3520.1|Name=mRNA_H-elongata_contig153317.3520.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MERQWKMVLKIIQYLLSNKYLGLTFERGSGFEMSLWTDSNYAEKANDTRS
VSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS
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