mRNA_H-elongata_contig153317.3520.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153317.3520.1
Unique NamemRNA_H-elongata_contig153317.3520.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6H5KLY3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY3_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.080e-11
Identity = 32/85 (37.65%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 PMERQWKMVLKIIQYLLSNKYLGLTFERGSGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
            P +R W  + KI+ YL   +YLG+T++RGSG  ++++ D++YA+   D RSVSG+A  +   +V      Q +++L +TE +YI+
Sbjct:  175 PAKRHWDAIQKILGYLTGTRYLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKMQTIVSLYSTEAEYIA 258          
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6H5L8G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G9_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 7.550e-11
Identity = 32/87 (36.78%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    1 PMERQWKMVLKIIQYLLSNKYLGLTFERGSGFEMS--LWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
            P    WK   K++ YLL   +L L F+R S  ++   ++ D+++A KA D RSVSG  + +   LV W+  TQ+ +A ST+E +Y++
Sbjct:   60 PKLSHWKAAPKVLNYLLGTAHLSLNFKRDSSVDVGTLVYVDADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLA 146          
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 8.580e-11
Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    1 PMERQWKMVLKIIQYLLSNKYLGLTFERGSGFEMS--LWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
            P    WK   KI+ YLL   +L L F+R S  ++   ++ D+++A KA D RSVSG  + +   LV W+  TQ+ +A ST+E +Y++
Sbjct:  489 PKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVDADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLA 575          
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6H5JMV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV5_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 8.840e-11
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   16 WKMVLKIIQYLLSNKYLGLTFERG--SGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
            WK  L I+ Y+    ++G+ FERG  +G  + ++ D++Y  KA + RSVSG  +I     V W   TQ+ +ALSTTE  Y++
Sbjct:   94 WKAALGILGYVRRTSWMGIAFERGVVTGMSVQVFVDADYTSKATEHRSVSGGRVICGGGCVTWFSRTQKCVALSTTETQYVA 175          
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A225UQG5_9STRA (Retrovirus-related pol Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UQG5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.570e-10
Identity = 29/85 (34.12%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 PMERQWKMVLKIIQYLLSNKYLGLTFERGSGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
            P E  W   +K+++YLL  K + +T +   G E++ ++D+++A   +D RSVSG+ +++  A V W   +Q+ +ALS+TE +Y++
Sbjct:  155 PGEAHWNAGIKVVRYLLKTKKVAITSDGLLGTELTAYSDADWAGNRDDRRSVSGMVLMMCDAPVVWRSTSQKTVALSSTEAEYMA 239          
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6H5JW47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW47_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 4.610e-10
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    1 PMERQWKMVLKIIQYLLSNKYLGLTFERGSGFEMS--LWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
            P    WK   KI+ YLL   +L L F+R S  ++   ++  +++A KA D RSVSG  + +   LV W+  TQ+ +A ST+E +Y++
Sbjct:   43 PKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVAADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLA 129          
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6L2PC32_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2PC32_TANCI)

HSP 1 Score: 63.9 bits (154), Expect = 5.770e-10
Identity = 30/85 (35.29%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    7 ERQWKMVLKIIQYLLSNKYLGLTFE--RGSGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
            +  W+ V  I++YL     +GL +E  RG+  +++ + DS+YA+  N  RS++G A +++  +V W  + Q V+ALSTTE +Y++
Sbjct: 1785 KNHWEAVKWILKYLRGTANVGLVYETNRGNYVDVTCFVDSDYAKDPNKGRSITGYAFLVHGCVVSWKEMLQHVVALSTTEVEYMA 1869          
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A5B6VMY0_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6VMY0_9ROSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.070e-9
Identity = 29/85 (34.12%), Postives = 49/85 (57.65%), Query Frame = 1
Query:    1 PMERQWKMVLKIIQYLLSNKYLGLTFERGSGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
            P +  +    ++++YL      G+ +++G   EM  +TDS+YAE   D++S SG A ++    V WS   QR+I LSTTE  +++
Sbjct:   62 PTQLHFAAAKRVLRYLKGTTDYGVFYKKGGASEMVAYTDSDYAEDKEDSKSTSGYAFMMCGGAVAWSSRKQRIITLSTTEAKFVA 146          
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A5N6LXA4_9ASTR (PI-PLC Y-box domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LXA4_9ASTR)

HSP 1 Score: 62.8 bits (151), Expect = 1.420e-9
Identity = 29/85 (34.12%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    1 PMERQWKMVLKIIQYLLSNKYLGLTFERGSGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
            P E   ++  +I++Y+ +    GLT+ R +  ++ ++ DS+YA   +D +S SG   IL  A V WS   Q ++ALS+TE +Y++
Sbjct:  436 PREEHLQVSKRILRYVKATYDYGLTYARNASLKLKVYMDSDYARDVDDRKSTSGYVCILSNAAVSWSSQKQEIVALSSTEAEYVA 520          
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Match: A0A6L2JGK7_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2JGK7_TANCI)

HSP 1 Score: 62.8 bits (151), Expect = 1.430e-9
Identity = 31/87 (35.63%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    1 PMERQWKMVLKIIQYLLSNKYLGLTF--ERGSGFEMSLWTDSNYAEKANDTRSVSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS 255
            P +  W+ V  I++YL     +GL +   RG+  +++ + +SNYA+  N  RS+SG A +++  +V W  + Q V+ALSTTE +Y++
Sbjct:  685 PGKNHWEAVKWILKYLRGTINVGLVYGTNRGNHVDVTSFVNSNYAKDPNKGRSISGYAFLVHGYVVSWKAMLQHVVALSTTEAEYMA 771          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153317.3520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLY3_9PHAE1.080e-1137.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L8G9_9PHAE7.550e-1136.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPV1_9PHAE8.580e-1137.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JMV5_9PHAE8.840e-1139.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A225UQG5_9STRA4.570e-1034.12Retrovirus-related pol Polyprotein n=1 Tax=Phytoph... [more]
A0A6H5JW47_9PHAE4.610e-1036.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6L2PC32_TANCI5.770e-1035.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A5B6VMY0_9ROSI1.070e-934.12Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6LXA4_9ASTR1.420e-934.12PI-PLC Y-box domain-containing protein n=1 Tax=Mik... [more]
A0A6L2JGK7_TANCI1.430e-935.63Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153317contigH-elongata_contig153317:1075..1329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue1.8e-08
Seed eggNOG ortholog67593.Physo135025
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size252
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929906.4053717-CDS-H-elongata_contig153317:1074..13261622929906.4053717-CDS-H-elongata_contig153317:1074..1326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153317 1075..1326 -
1691679203.269119-CDS-H-elongata_contig153317:1074..13261691679203.269119-CDS-H-elongata_contig153317:1074..1326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153317 1075..1326 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929906.4277954-UTR-H-elongata_contig153317:1326..13291622929906.4277954-UTR-H-elongata_contig153317:1326..1329Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig153317 1327..1329 -
1691679203.2784145-UTR-H-elongata_contig153317:1326..13291691679203.2784145-UTR-H-elongata_contig153317:1326..1329Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig153317 1327..1329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153317.3520.1prot_H-elongata_contig153317.3520.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153317 1075..1326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153317.3520.1

>prot_H-elongata_contig153317.3520.1 ID=prot_H-elongata_contig153317.3520.1|Name=mRNA_H-elongata_contig153317.3520.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MERQWKMVLKIIQYLLSNKYLGLTFERGSGFEMSLWTDSNYAEKANDTRS
VSGVAIILYFALVGWSRLTQRVIALSTTEDDYIS
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mRNA from alignment at H-elongata_contig153317:1075..1329-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153317.3520.1 ID=mRNA_H-elongata_contig153317.3520.1|Name=mRNA_H-elongata_contig153317.3520.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=255bp|location=Sequence derived from alignment at H-elongata_contig153317:1075..1329- (Himanthalia elongata Himel1 dioecious)
CCAATGGAGAGACAATGGAAGATGGTGTTGAAGATTATCCAGTATTTGCT TAGTAACAAGTACTTGGGTTTGACGTTTGAGAGAGGCTCCGGTTTTGAGA TGTCGTTGTGGACGGACTCCAATTACGCCGAGAAGGCAAACGACACGCGG TCTGTCTCTGGAGTAGCGATTATATTATATTTTGCTCTGGTGGGATGGTC AAGGTTGACACAGAGGGTGATTGCTCTTTCGACTACTGAGGATGATTATA TTTCG
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Coding sequence (CDS) from alignment at H-elongata_contig153317:1075..1329-

>mRNA_H-elongata_contig153317.3520.1 ID=mRNA_H-elongata_contig153317.3520.1|Name=mRNA_H-elongata_contig153317.3520.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig153317:1075..1329- (Himanthalia elongata Himel1 dioecious)
ATGGAGAGACAATGGAAGATGGTGTTGAAGATTATCCAGTATTTGCTTAG
TAACAAGTACTTGGGTTTGACGTTTGAGAGAGGCTCCGGTTTTGAGATGT
CGTTGTGGACGGACTCCAATTACGCCGAGAAGGCAAACGACACGCGGTCT
GTCTCTGGAGTAGCGATTATATTATATTTTGCTCTGGTGGGATGGTCAAG
GTTGACACAGAGGGTGATTGCTCTTTCGACTACTGAGGATGATTATATTT
CGATGGAGAGACAATGGAAGATGGTGTTGAAGATTATCCAGTATTTGCTT
AGTAACAAGTACTTGGGTTTGACGTTTGAGAGAGGCTCCGGTTTTGAGAT
GTCGTTGTGGACGGACTCCAATTACGCCGAGAAGGCAAACGACACGCGGT
CTGTCTCTGGAGTAGCGATTATATTATATTTTGCTCTGGTGGGATGGTCA
AGGTTGACACAGAGGGTGATTGCTCTTTCGACTACTGAGGATGATTATAT
TTCG
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