mRNA_H-elongata_contig153280.3518.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153280.3518.1
Unique NamemRNA_H-elongata_contig153280.3518.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig153280.3518.1 vs. uniprot
Match: A0A6H5L056_9PHAE (NUC194 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L056_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 1.260e-50
Identity = 85/128 (66.41%), Postives = 105/128 (82.03%), Query Frame = 1 
Query:   28 EDGVFLEMSYINREPCMRSLLLVVQTQRRMFEGVWHDRFEQSRGVYEPAWSSTMRIKLADPGLPRNVRLLAFQFALNEPAAAALKPWAKKWIVAMADFALAPLPEGLRVDGESGLHYILRDFAHLLLN 411
            ED ++LEMS++N+EPCMRSLL V+  QRR+FE  W+++ +QS G++EPAWS  MR KL D  LPRNVR+LAFQFALN P + AL PWA  WI A++DFALAPLPEGLR DGE+GLHY+LRDFA LLL+
Sbjct: 2196 EDVIYLEMSHVNKEPCMRSLLQVMVAQRRLFEDSWNEQVDQSNGMFEPAWSVKMRAKLEDIDLPRNVRILAFQFALNAPVSTALLPWAVPWIKALSDFALAPLPEGLRTDGENGLHYLLRDFAQLLLD 2323
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BLAST of mRNA_H-elongata_contig153280.3518.1 vs. uniprot
Match: D8LKP7_ECTSI (Wu:fa96e12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP7_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 9.420e-37
Identity = 67/105 (63.81%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:   28 EDGVFLEMSYINREPCMRSLLLVVQTQRRMFEGVWHDRFEQSRGVYEPAWSSTMRIKLADPGLPRNVRLLAFQFALNEPAAAALKPWAKKWIVAMADFALAPLPE 342
            ED VFLEMS++N+EPCMRSLL V+  Q+R+F   W+++ +QS G++EPAWS  MR KL D  LPRNVR+LAFQFALN P + AL PWA  WI A++DFALAPLPE
Sbjct: 2452 EDAVFLEMSHVNKEPCMRSLLQVMVAQQRLFGDSWNEQVDQSNGMFEPAWSVKMRAKLEDIDLPRNVRILAFQFALNAPVSTALLPWAVPWIKALSDFALAPLPE 2556
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153280.3518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L056_9PHAE1.260e-5066.41NUC194 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LKP7_ECTSI9.420e-3763.81Wu:fa96e12 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153280contigH-elongata_contig153280:1103..1513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.2
Seed ortholog evalue2.2e-32
Seed eggNOG ortholog2880.D8LKP7
KEGG koko:K06642,ko:K07203,ko:K08873
KEGG Pathwayko01521,ko01522,ko03015,ko03450,ko04012,ko04066,ko04072,ko04110,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map03015,map03450,map04012,map04066,map04072,map04110,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00297
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0891@2759
EC2.7.11.1
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03032,ko03400,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929906.0840402-CDS-H-elongata_contig153280:1102..15131622929906.0840402-CDS-H-elongata_contig153280:1102..1513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153280 1103..1513 +
1691679203.057656-CDS-H-elongata_contig153280:1102..15131691679203.057656-CDS-H-elongata_contig153280:1102..1513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153280 1103..1513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153280.3518.1prot_H-elongata_contig153280.3518.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153280 1103..1513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153280.3518.1

>prot_H-elongata_contig153280.3518.1 ID=prot_H-elongata_contig153280.3518.1|Name=mRNA_H-elongata_contig153280.3518.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
EEVEGEDDVEDGVFLEMSYINREPCMRSLLLVVQTQRRMFEGVWHDRFEQ
SRGVYEPAWSSTMRIKLADPGLPRNVRLLAFQFALNEPAAAALKPWAKKW
IVAMADFALAPLPEGLRVDGESGLHYILRDFAHLLLN
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mRNA from alignment at H-elongata_contig153280:1103..1513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153280.3518.1 ID=mRNA_H-elongata_contig153280.3518.1|Name=mRNA_H-elongata_contig153280.3518.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=411bp|location=Sequence derived from alignment at H-elongata_contig153280:1103..1513+ (Himanthalia elongata Himel1 dioecious)
GAAGAAGTCGAGGGCGAAGATGACGTGGAAGATGGCGTTTTCTTGGAGAT
GAGCTACATAAACAGGGAGCCGTGCATGCGGTCGCTGCTGCTGGTAGTAC
AGACGCAAAGACGGATGTTCGAGGGAGTATGGCATGACCGCTTCGAGCAA
AGCAGGGGGGTGTACGAGCCGGCGTGGTCGAGCACGATGAGGATCAAGCT
CGCCGATCCGGGTCTGCCGCGTAACGTGCGTTTACTGGCATTCCAGTTCG
CCCTGAATGAACCCGCGGCGGCAGCGCTAAAGCCTTGGGCAAAAAAATGG
ATTGTTGCGATGGCCGATTTTGCCCTAGCTCCGCTACCCGAAGGGCTGAG
AGTCGACGGAGAGTCGGGGCTGCACTATATCCTTCGAGATTTCGCACATT
TACTCCTCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig153280:1103..1513+

>mRNA_H-elongata_contig153280.3518.1 ID=mRNA_H-elongata_contig153280.3518.1|Name=mRNA_H-elongata_contig153280.3518.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig153280:1103..1513+ (Himanthalia elongata Himel1 dioecious)
GAAGAAGTCGAGGGCGAAGATGACGTGGAAGATGGCGTTTTCTTGGAGAT
GAGCTACATAAACAGGGAGCCGTGCATGCGGTCGCTGCTGCTGGTAGTAC
AGACGCAAAGACGGATGTTCGAGGGAGTATGGCATGACCGCTTCGAGCAA
AGCAGGGGGGTGTACGAGCCGGCGTGGTCGAGCACGATGAGGATCAAGCT
CGCCGATCCGGGTCTGCCGCGTAACGTGCGTTTACTGGCATTCCAGTTCG
CCCTGAATGAACCCGCGGCGGCAGCGCTAAAGCCTTGGGCAAAAAAATGG
ATTGTTGCGATGGCCGATTTTGCCCTAGCTCCGCTACCCGAAGGGCTGAG
AGTCGACGGAGAGTCGGGGCTGCACTATATCCTTCGAGATTTCGCACATT
TACTCCTCAACGAAGAAGTCGAGGGCGAAGATGACGTGGAAGATGGCGTT
TTCTTGGAGATGAGCTACATAAACAGGGAGCCGTGCATGCGGTCGCTGCT
GCTGGTAGTACAGACGCAAAGACGGATGTTCGAGGGAGTATGGCATGACC
GCTTCGAGCAAAGCAGGGGGGTGTACGAGCCGGCGTGGTCGAGCACGATG
AGGATCAAGCTCGCCGATCCGGGTCTGCCGCGTAACGTGCGTTTACTGGC
ATTCCAGTTCGCCCTGAATGAACCCGCGGCGGCAGCGCTAAAGCCTTGGG
CAAAAAAATGGATTGTTGCGATGGCCGATTTTGCCCTAGCTCCGCTACCC
GAAGGGCTGAGAGTCGACGGAGAGTCGGGGCTGCACTATATCCTTCGAGA
TTTCGCACATTTACTCCTCAAC
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