prot_H-elongata_contig153280.3518.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig153280.3518.1
Unique Nameprot_H-elongata_contig153280.3518.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length137
Homology
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BLAST of mRNA_H-elongata_contig153280.3518.1 vs. uniprot
Match: A0A6H5L056_9PHAE (NUC194 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L056_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 1.260e-50
Identity = 85/128 (66.41%), Postives = 105/128 (82.03%), Query Frame = 0 
Query:   10 EDGVFLEMSYINREPCMRSLLLVVQTQRRMFEGVWHDRFEQSRGVYEPAWSSTMRIKLADPGLPRNVRLLAFQFALNEPAAAALKPWAKKWIVAMADFALAPLPEGLRVDGESGLHYILRDFAHLLLN 137
            ED ++LEMS++N+EPCMRSLL V+  QRR+FE  W+++ +QS G++EPAWS  MR KL D  LPRNVR+LAFQFALN P + AL PWA  WI A++DFALAPLPEGLR DGE+GLHY+LRDFA LLL+
Sbjct: 2196 EDVIYLEMSHVNKEPCMRSLLQVMVAQRRLFEDSWNEQVDQSNGMFEPAWSVKMRAKLEDIDLPRNVRILAFQFALNAPVSTALLPWAVPWIKALSDFALAPLPEGLRTDGENGLHYLLRDFAQLLLD 2323
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BLAST of mRNA_H-elongata_contig153280.3518.1 vs. uniprot
Match: D8LKP7_ECTSI (Wu:fa96e12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP7_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 9.420e-37
Identity = 67/105 (63.81%), Postives = 83/105 (79.05%), Query Frame = 0 
Query:   10 EDGVFLEMSYINREPCMRSLLLVVQTQRRMFEGVWHDRFEQSRGVYEPAWSSTMRIKLADPGLPRNVRLLAFQFALNEPAAAALKPWAKKWIVAMADFALAPLPE 114
            ED VFLEMS++N+EPCMRSLL V+  Q+R+F   W+++ +QS G++EPAWS  MR KL D  LPRNVR+LAFQFALN P + AL PWA  WI A++DFALAPLPE
Sbjct: 2452 EDAVFLEMSHVNKEPCMRSLLQVMVAQQRLFGDSWNEQVDQSNGMFEPAWSVKMRAKLEDIDLPRNVRILAFQFALNAPVSTALLPWAVPWIKALSDFALAPLPE 2556
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153280.3518.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L056_9PHAE1.260e-5066.41NUC194 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LKP7_ECTSI9.420e-3763.81Wu:fa96e12 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012582NUC194PFAMPF08163NUC194coord: 9..136
e-value: 5.5E-10
score: 38.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153280contigH-elongata_contig153280:1103..1513 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153280.3518.1mRNA_H-elongata_contig153280.3518.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig153280 1103..1513 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig153280.3518.1 ID=prot_H-elongata_contig153280.3518.1|Name=mRNA_H-elongata_contig153280.3518.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
EEVEGEDDVEDGVFLEMSYINREPCMRSLLLVVQTQRRMFEGVWHDRFEQ
SRGVYEPAWSSTMRIKLADPGLPRNVRLLAFQFALNEPAAAALKPWAKKW
IVAMADFALAPLPEGLRVDGESGLHYILRDFAHLLLN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012582NUC194