mRNA_H-elongata_contig15292.3497.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15292.3497.1
Unique NamemRNA_H-elongata_contig15292.3497.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15292.3497.1 vs. uniprot
Match: D8LIP1_ECTSI (Phosphoribosylformylglycinamidine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP1_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 5.610e-64
Identity = 103/120 (85.83%), Postives = 111/120 (92.50%), Query Frame = 1
Query:    7 KTLFRLVKDTLRKGPKSNSIIAFHDNSSSIRGPRCQVALPSDPGKPCAVRCRERTLHPILTAESHNFPSGVAPFPGAETGTGGRLRDVMATGRGAKPIAGVSSYCVGNLRIPGYPLPWEE 366
            KTLF+LVK+TL KG  +NSIIAFHDNSS+IRGP C VALPS PGKP A++  ERTLHPILTAE+HNFPSGVAPFPGAETGTGGRLRDVMATGRGAKPIAG+SSYCVGNLRIPGYPLPWEE
Sbjct:  344 KTLFKLVKETLPKGAANNSIIAFHDNSSAIRGPLCPVALPSTPGKPSAIKSGERTLHPILTAETHNFPSGVAPFPGAETGTGGRLRDVMATGRGAKPIAGISSYCVGNLRIPGYPLPWEE 463          
BLAST of mRNA_H-elongata_contig15292.3497.1 vs. uniprot
Match: A0A7S2R0R5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0R5_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.190e-55
Identity = 88/120 (73.33%), Postives = 103/120 (85.83%), Query Frame = 1
Query:    7 KTLFRLVKDTLRKGPKSNSIIAFHDNSSSIRGPRCQVALPSDPGKPCAVRCRERTLHPILTAESHNFPSGVAPFPGAETGTGGRLRDVMATGRGAKPIAGVSSYCVGNLRIPGYPLPWEE 366
            KTLF++VK+TL KG  +NSIIAFHDNSSSIRG  C   LP++ GK  A++  ++TLHPILTAE+HNFP GVAPFPGAETGTGGRLRDVMATGRGA P+AG+S+YCVGNL IPGY LPWE+
Sbjct:  102 KTLFQMVKETLPKGIPNNSIIAFHDNSSSIRGYECDALLPTEFGKAGAMKVDKQTLHPILTAETHNFPCGVAPFPGAETGTGGRLRDVMATGRGAYPVAGISAYCVGNLHIPGYELPWED 221          
BLAST of mRNA_H-elongata_contig15292.3497.1 vs. uniprot
Match: A0A7S4K8A4_9STRA (Phosphoribosylformylglycinamidine synthase (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K8A4_9STRA)

HSP 1 Score: 193 bits (491), Expect = 8.290e-55
Identity = 90/119 (75.63%), Postives = 103/119 (86.55%), Query Frame = 1
Query:   10 TLFRLVKDTLRKGPKSNSIIAFHDNSSSIRGPRCQVALPSDPGKPCAVRCRERTLHPILTAESHNFPSGVAPFPGAETGTGGRLRDVMATGRGAKPIAGVSSYCVGNLRIPGYPLPWEE 366
            TLFR+VKDTL KG  +NS+IAFHDNSS+IRG  C   +P++ GK   ++  +RTLHPILTAE+HNFPSGVAPFPGAETGTGGRLRDVMATGRGA P+AGVSSYCVGNLRIPGY LPWE+
Sbjct:  308 TLFRMVKDTLPKGVPNNSVIAFHDNSSAIRGYECDALVPTEFGKAGPMKVEKRTLHPILTAETHNFPSGVAPFPGAETGTGGRLRDVMATGRGAYPVAGVSSYCVGNLRIPGYELPWED 426          
BLAST of mRNA_H-elongata_contig15292.3497.1 vs. uniprot
Match: A0A7S1ZK75_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZK75_TRICV)

HSP 1 Score: 180 bits (456), Expect = 9.430e-53
Identity = 85/119 (71.43%), Postives = 100/119 (84.03%), Query Frame = 1
Query:   10 TLFRLVKDTLRKGPKSNSIIAFHDNSSSIRGPRCQVALPSDPGKPCAVRCRERTLHPILTAESHNFPSGVAPFPGAETGTGGRLRDVMATGRGAKPIAGVSSYCVGNLRIPGYPLPWEE 366
            TLF++VK TL KG  +NS+IAFHDNSS+IRG   +  +P++ GK   +   +RTLHPILTAE+HNFPSGVAPFPGAETGTGGRLRDVMATGRGA P+AGVSSYCVGNL +PGY LPWE+
Sbjct:  271 TLFQMVKATLPKGVPNNSVIAFHDNSSAIRGYEVEALVPTEFGKAGPMIKDKRTLHPILTAETHNFPSGVAPFPGAETGTGGRLRDVMATGRGAYPVAGVSSYCVGNLNVPGYDLPWED 389          
BLAST of mRNA_H-elongata_contig15292.3497.1 vs. uniprot
Match: A0A7S2JTG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JTG3_9STRA)

HSP 1 Score: 175 bits (444), Expect = 1.830e-51
Identity = 82/119 (68.91%), Postives = 95/119 (79.83%), Query Frame = 1
Query:   10 TLFRLVKDTLRKGPKSNSIIAFHDNSSSIRGPRCQVALPSDPGKPCAVRCRERTLHPILTAESHNFPSGVAPFPGAETGTGGRLRDVMATGRGAKPIAGVSSYCVGNLRIPGYPLPWEE 366
            TLF++VKDTL K   +NS+IAFHDNSSSIRG  C    P+  GK   +    +TLHPILTAE+HNFP GVAPFPGAETGTGGRLRDV ATG+GA P+AG+SSYCVGNL IPGY +PWE+
Sbjct:    8 TLFQMVKDTLPKDKPNNSVIAFHDNSSSIRGYECTSLKPTTFGKAGPMALESQTLHPILTAETHNFPCGVAPFPGAETGTGGRLRDVTATGQGAYPVAGISSYCVGNLNIPGYDMPWED 126          
BLAST of mRNA_H-elongata_contig15292.3497.1 vs. uniprot
Match: A0A1E7FEH8_9STRA (Phosphoribosylformylglycinamidine synthase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEH8_9STRA)

HSP 1 Score: 178 bits (452), Expect = 1.490e-49
Identity = 84/119 (70.59%), Postives = 99/119 (83.19%), Query Frame = 1
Query:   10 TLFRLVKDTLRKGPKSNSIIAFHDNSSSIRGPRCQVALPSDPGKPCAVRCRERTLHPILTAESHNFPSGVAPFPGAETGTGGRLRDVMATGRGAKPIAGVSSYCVGNLRIPGYPLPWEE 366
            TLF++VK TL K   +NSIIAFHDNSSSIRG  C   +PS   +  +++  ++TLHPILTAE+HNFPSGVAPF GAETGTGGRLRDVMATGRGA P+AG+SSYCVGNL+IPGY LPWE+
Sbjct:  155 TLFKMVKATLPKDVPNNSIIAFHDNSSSIRGYECDALVPSSTTQAGSMKVGKQTLHPILTAETHNFPSGVAPFSGAETGTGGRLRDVMATGRGAYPVAGISSYCVGNLQIPGYELPWED 273          
BLAST of mRNA_H-elongata_contig15292.3497.1 vs. uniprot
Match: A0A7S0KAP8_9STRA (Phosphoribosylformylglycinamidine synthase n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KAP8_9STRA)

HSP 1 Score: 178 bits (452), Expect = 1.500e-49
Identity = 87/119 (73.11%), Postives = 99/119 (83.19%), Query Frame = 1
Query:   10 TLFRLVKDTLRKGPKSNSIIAFHDNSSSIRGPRCQVALPSDPGKPCAVRCRERTLHPILTAESHNFPSGVAPFPGAETGTGGRLRDVMATGRGAKPIAGVSSYCVGNLRIPGYPLPWEE 366
            TLF++VK TL K   +NS+IAFHDNSSSIRG  C    P+  GKP +V  +++TLHPILTAE+HNFPSGVAPFPGAETGTGGRLRDV ATGRGA P+AGVSSYCVGNL IPGY LPWE+
Sbjct:  254 TLFQMVKATLPKDQPNNSVIAFHDNSSSIRGYECTGMKPTV-GKPGSVTLQKQTLHPILTAETHNFPSGVAPFPGAETGTGGRLRDVTATGRGAYPVAGVSSYCVGNLNIPGYNLPWED 371          
BLAST of mRNA_H-elongata_contig15292.3497.1 vs. uniprot
Match: A0A7S4RP44_9STRA (Phosphoribosylformylglycinamidine synthase (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RP44_9STRA)

HSP 1 Score: 178 bits (451), Expect = 2.020e-49
Identity = 86/119 (72.27%), Postives = 95/119 (79.83%), Query Frame = 1
Query:   10 TLFRLVKDTLRKGPKSNSIIAFHDNSSSIRGPRCQVALPSDPGKPCAVRCRERTLHPILTAESHNFPSGVAPFPGAETGTGGRLRDVMATGRGAKPIAGVSSYCVGNLRIPGYPLPWEE 366
            TLF++VK TL K   +NSIIAFHDNSS+IRG  C    P+   K   V   ++TLHPILTAE+HNFP GVAPFPGAETGTGGRLRDVMATGRGA P+AGVSSYCVGNLRIPGY LPWE 
Sbjct:  251 TLFQMVKATLPKDKPNNSIIAFHDNSSAIRGYECMALRPTQFSKAGPVEVGKQTLHPILTAETHNFPCGVAPFPGAETGTGGRLRDVMATGRGAYPVAGVSSYCVGNLRIPGYDLPWES 369          
BLAST of mRNA_H-elongata_contig15292.3497.1 vs. uniprot
Match: A0A7S3Q0D6_9STRA (Phosphoribosylformylglycinamidine synthase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0D6_9STRA)

HSP 1 Score: 178 bits (451), Expect = 2.040e-49
Identity = 84/120 (70.00%), Postives = 98/120 (81.67%), Query Frame = 1
Query:    7 KTLFRLVKDTLRKGPKSNSIIAFHDNSSSIRGPRCQVALPSDPGKPCAVRCRERTLHPILTAESHNFPSGVAPFPGAETGTGGRLRDVMATGRGAKPIAGVSSYCVGNLRIPGYPLPWEE 366
            KTLF++VK+TL +  K NSIIAFHDNSSSIRG +C    P+  GK   +   E+TLHPILTAE+HNFP GVAPF GAETGTGGRLRDVMATGRGA P+AG+S+YCVGNL+IP Y LPWE+
Sbjct:  253 KTLFKMVKETLTEESKQNSIIAFHDNSSSIRGYKCNALKPTIVGKASPMVVEEQTLHPILTAETHNFPCGVAPFAGAETGTGGRLRDVMATGRGAYPVAGISAYCVGNLQIPEYELPWED 372          
BLAST of mRNA_H-elongata_contig15292.3497.1 vs. uniprot
Match: B7FQE5_PHATC (Phosphoribosylformylglycinamidine synthase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQE5_PHATC)

HSP 1 Score: 176 bits (447), Expect = 7.060e-49
Identity = 85/119 (71.43%), Postives = 94/119 (78.99%), Query Frame = 1
Query:   10 TLFRLVKDTLRKGPKSNSIIAFHDNSSSIRGPRCQVALPSDPGKPCAVRCRERTLHPILTAESHNFPSGVAPFPGAETGTGGRLRDVMATGRGAKPIAGVSSYCVGNLRIPGYPLPWEE 366
            TLF++VKDTL K   +NSIIAFHDNSSSIRG  C    P        V    +TLHPILTAE+HNFPSGVAPFPGAETGTGGRLRDV ATGRGA P+AG+SSYCVGNL+IPGY LPWE+
Sbjct:  253 TLFQMVKDTLPKDIPNNSIIAFHDNSSSIRGYECSALRPVSLDSAGPVHVGNQTLHPILTAETHNFPSGVAPFPGAETGTGGRLRDVTATGRGAYPVAGISSYCVGNLQIPGYDLPWED 371          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15292.3497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIP1_ECTSI5.610e-6485.83Phosphoribosylformylglycinamidine synthase n=1 Tax... [more]
A0A7S2R0R5_9STRA1.190e-5573.33Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S4K8A4_9STRA8.290e-5575.63Phosphoribosylformylglycinamidine synthase (Fragme... [more]
A0A7S1ZK75_TRICV9.430e-5371.43Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2JTG3_9STRA1.830e-5168.91Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A1E7FEH8_9STRA1.490e-4970.59Phosphoribosylformylglycinamidine synthase n=1 Tax... [more]
A0A7S0KAP8_9STRA1.500e-4973.11Phosphoribosylformylglycinamidine synthase n=1 Tax... [more]
A0A7S4RP44_9STRA2.020e-4972.27Phosphoribosylformylglycinamidine synthase (Fragme... [more]
A0A7S3Q0D6_9STRA2.040e-4970.00Phosphoribosylformylglycinamidine synthase n=1 Tax... [more]
B7FQE5_PHATC7.060e-4971.43Phosphoribosylformylglycinamidine synthase n=2 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15292contigH-elongata_contig15292:2158..6580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.2
Seed ortholog evalue1.1e-54
Seed eggNOG ortholog2880.D8LIP1
KEGG rclassRC00010,RC01160
KEGG koko:K01952
KEGG ReactionR04463
KEGG Pathwayko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
KEGG ModuleM00048
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009507,GO:0009532,GO:0009536,GO:0009555,GO:0009570,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019637,GO:0030554,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0055046,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.phosphoribosylformylglycinamidine synthase activity
EggNOG OGsCOG0046@1,KOG1907@2759
EC6.3.5.3
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size368
Cds size366
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15292.3497.1prot_H-elongata_contig15292.3497.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15292 2158..6580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929904.138718-CDS-H-elongata_contig15292:2157..22841622929904.138718-CDS-H-elongata_contig15292:2157..2284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15292 2158..2284 -
1691679202.2151623-CDS-H-elongata_contig15292:2157..22841691679202.2151623-CDS-H-elongata_contig15292:2157..2284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15292 2158..2284 -
1622929904.1560223-CDS-H-elongata_contig15292:4950..51441622929904.1560223-CDS-H-elongata_contig15292:4950..5144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15292 4951..5144 -
1691679202.232984-CDS-H-elongata_contig15292:4950..51441691679202.232984-CDS-H-elongata_contig15292:4950..5144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15292 4951..5144 -
1622929904.1733263-CDS-H-elongata_contig15292:6535..65801622929904.1733263-CDS-H-elongata_contig15292:6535..6580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15292 6536..6580 -
1691679202.2458358-CDS-H-elongata_contig15292:6535..65801691679202.2458358-CDS-H-elongata_contig15292:6535..6580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15292 6536..6580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15292.3497.1

>prot_H-elongata_contig15292.3497.1 ID=prot_H-elongata_contig15292.3497.1|Name=mRNA_H-elongata_contig15292.3497.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MDKTLFRLVKDTLRKGPKSNSIIAFHDNSSSIRGPRCQVALPSDPGKPCA
VRCRERTLHPILTAESHNFPSGVAPFPGAETGTGGRLRDVMATGRGAKPI
AGVSSYCVGNLRIPGYPLPWEE
back to top

mRNA from alignment at H-elongata_contig15292:2158..6580-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15292.3497.1 ID=mRNA_H-elongata_contig15292.3497.1|Name=mRNA_H-elongata_contig15292.3497.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4423bp|location=Sequence derived from alignment at H-elongata_contig15292:2158..6580- (Himanthalia elongata Himel1 dioecious)
ATGGACAAGACCCTGTTCAGGCTCGTCAAGGACACGCTCCGAAAGGTGTT CCAAAACCACAGGCATTACGTGGAGCATAGTTCGCGCTGTAGGAGTAAAA GCAATGCTGCACAGCGCGTCGCATTTCTGTGAGTTGTGGGATCCCCCCCC GGGGCCGCGGTAGGCTTGGCGACCACCCCGTTGAAGGAATGGATCGCCAG TTGGTAAAAGCGCCGATGTTAAATCATGTGTATTGCGATACATTGTTTTG GTGTGTTCGGGTTAGCGTTACGGTTGGGTCGGGTTGGGTCCACTCGGTCC GCAAGGAGGTTTTGTATGTCCTCAGGCTCTGGCGATAAAAAGTCGTTCAG CGTGCCTATCGCGACGCTTCCCATCCCACCTGCCTGTGGTGATATTACCT TAAGGGGTCATCACCATCCGTTCTCCGACTGGTTCACGCCCACCACTTTT TGCTGCCGTTGAAAATCAGCAGCACTGCTACATCTTTATTCAAAATTTGG TGAAAGCCTATGGCTGAACCTTGCTCGCTCCCGCTCTCACCGCTCACCTC TCACGCGTTTCGCTACAGAGACTTGAACCGTAAAATGGTCATTTTTTTTA ATGAGAACTGAACTCAGGACTTCAATACGATAATATTGATTTGGGTGATG CCCCGTTAGAATACTCGGGCAAAAAGTTACAGATATATACAGGTGCTTTC CATTGTATAGAGGCGTTCTCCGACAAAATGGTAAAAGTCAGCTGCAGAGC AGATCCCGCCCCCTCCCCCCCCCCCTACCTCTCCCCGCTCTCCAAGACCG CAACATCCCGGCTTGGGATAGTAATGGGATGTGCCGCGAAACGGACACTC CGCCGGTGTTTTTGTCGGTTTCTCGTAAAGGTAGAAGTAGGGGGGGGAGG ATAAGGAAAAGAGGTGACGAAGGCACCTTTCGCGCGAAGAACGTAGAGAA GAGGAAAAGGTATAATAGCTGCACTTATACACCATATTGACTGCGAGAGG GAGAGGGGGGGCGCGGGGATTCTGCATTTTCTTGAGTTGCTTAGCCGCCG CCGGGAGGGGTAGGGGGGAGGGCGGCGTCGACCGCCCACGCGCTTTCCGC TGTGAACGCTTTCGCCTTACGTGTTTATTCTTGTGTTGTTTTGGTCCATG CGGAAGAGGCGTTCTTTATTTTTCTCCCCTCCCTCTCTCCATCCTTCTAT GCTGTCAATAGTGTCCTGCTCTACCCTTAAGGACATCTCCCGTGATCGAA GCCGGCCCTCTTTCTCGCGTGCACCCTTGAAGGAAAGTGTCCCCCGCCCC CTCCCCCGTCTTTCCACAGATCATTACCCTCGCAAGCATTTCAGTCCCAC CATTAACTCCTCCCTTCCTCCCACTCCGTCCGCCGTCTACCCGGGGATAT ATTTTATTGTCCCCTGTCTCCCATTCTCTAACGCAGGGCCCTAAGAGCAA CAGCATCATCGCTTTCCACGACAACTCTTCGTCTATCCGCGGCCCGCGCT GCCAGGTGGCGCTACCGTCCGACCCCGGCAAGCCCTGCGCCGTCCGGTGC CGAGAGCGCACCCTGCACCCCATCCTCACGGCAGAGTCGCACAACTTCCC AAGCGGCGTCGCTCCCTTTCCCGGGGCCGAGTGAGTCAGTCACACACACG AGTCGTAGAGGATCAGTGAAGTTTTATCTTTCTTGCTAGCAAATATATGC TCAACCCCTTCAACATTCAGTGTTCCGTATTGAATGTTCACTATTCAGTA TTGACTGTTCACTATTCAGTATTGACTGCTCTTGTGGAGATTCGGTGTGC ATCTCACATGACGGAATGAGGAGCATGGGATTTATTTCCGAGGAGCATGG GAGGGGATAGGGGATAGGGCGAAGTCGGGAGGGAGAACGGATGGAAGGGG TAGGTCTGGGTCTGAGAGAGGAATGCCGAAGGTTACAAGAGGGTATAATG CACCACCGGGGATGATTGATGGGCGTCCCCGCCCACTTTATATTGCCAAC CACGGTGAAGTAGAGCACGCACGCAGCAGCAGCAGGCATAGCTCGGCGGA ATCGAGGAGATTATGCCTATTAATACTTAGCGGTGTGTAGCAGAAATCGT GCTCCCATTGGAGAGGAAAGGGGAGAGGAGGGGGCGTACTAAAGTTCTCC ATGCCTTCGCCACGAGTCCGTTGACCATGTCTCCTCCGGAGGGAGGGAAG GAGAGAAGGAGCATTGTTCCTCCATGATCGATCACCGATGGCCAATCGTT CATTTCATTCATGCTTTGCTGCCAAAGGTTCCGCAAATGTTGTTTTTGTT TTTTTCTTATCATGTCTCCTGTACATCCAGTCTTCGCATTCTCAGGCCAT TTTTTTTTTATACCCTGATGTAGCTGCTCTAAGCTTTATGCTCTATACGT CATTCTCTATACTACTGTACCAGGTATGTTTTATATCATATTCGTCTGGC TGTGCCATCAAATATTTTAATTGATATTTCCCCCCTTACCGTAACCTTTA GTTTCAACAGTTTGGACACAATAATACGGGAGCGCCTATTTTTAACCCAT GGGTTTGAAGTTAGAACCCTAACTCAAGCACGCATGGGATAGAAACCCCG GGGTAGGATACCTTCCTGTCCCCCAGAGGCCAGTATATAAATGGTTTCAG AGAAACGACTGTTCTCTGCATGAAATCTACGTTTTTTGCTATTTTTTGAA TTCCGGAAAGGGGGGCAGTAAGGTTTCCTACCCCGGGGTTTCCATCCCAT ACGTACGTGAGTTAGGTTCTAACTTCTAACCCATGGCCTCCAGAATTCAC TTCGAAAAAAGTGCAAAAAACGTTAATTTCATGCAGAGTAAAATAGCCGT TTCTCTGAAACCATTTATATACTGGCTGACCCAACCCGCCCCTAACCTTA ACCCACACCAGCCACCCATAGGGTGCTCGGGGGGACAGTAAGGTGTCCTA CCCCGGGGTTTCCATCCCATGCGTGCTTGGGTTAGGGTTCTAACTTCTAA CCCATGGGTTAGAAATAGGTAAATCCCCTCATTTTTATGTTTAACCTTCT GGAACTGGATTTCAAGTTTTATATTGAATTTAGTATGTAAAAAAGATCGA GTTCCATAAGTGTTAACGGGCATTTTCCTCAAAAGAATATCGTGGATATA CGGTCTTTTTACGCACACTCATTCGAGCCGCAACCCCATTTGTCATTTGT TGCTGTATTTGTCCTCGTCTAGCGTATCTTTCTTAAATCTCCGTATAACG TCTACGAAGAAGGTCAACGCCTACTGTCCTGATTTGTGTGCCCTTTAATG TTCTGGTCCATGCAGCTACAGTATTTATTTTAAGCCAATATCTATTGCTT CGTCTATCATTCCGTCCTTCTCTCTACCGTATACCGTATACCGTATGTCA TTTTTCGTGGCGCTCTCTCTACCTACGAAAGCTCTTCCGCTATATCTATA TCCCCCTTAATTTTACGCAAGGATTTTCAACTGCCAACGTCCAATGTTCT CATGTTCGGGGATATTCAAGCTTATTCCCATGTTGCTATGATAGATTATC CTACTCGATGGATAGTCTGTTGTTGTTGGTGATCGGGAGGAAGGAATGAG AGAGGGGATGGGGGTGGGGGGTACATCTCCGAGTCGTGCTCGAGACCCCC TTGAGACCACGAGCGCCGTTTCTTCCATGATTTCTGGATTGCAGGAAGCA TTTCTTTTTTTTAAGCTTGTGTGTGTGAAGGGGAGACATACATATGTGTA AAATATATGTTTATATTTATATAGTCTATAGAAAGATGAAGAAAGAAAGA TAAATAGTGTAAATATAATAGTTGGTTGAGAGTTTTTCGGTTGGGGCGGT TGGGGGGATTTATTTTATTGATTTGAGGTGGAATGAAGAGTTGCCCCCTT TATCTGGGGTAATACAGCGCAGGATACGGTGTTTTTCTTTTTATAAAAAC ACATGAAATCATTCCAACCCTCCGAACATATATTGCTTTCTTAGCACCAT GAGAAGGTGCAATCCAGGGAGACGAACAAACGATCGTCAGGTTCGAATGT GTAAATATAACTACCTTTTGAGCACAAAATCGTGACTTGTGGTTAATCAA TCGTATTGTGTTGTAATATACGTTGCTGTGGAATGTTTCTTGCCCTCCCT TCTTCTCGGGTCGCCTTTTTCCTTTCTCTCTTGTCATAGTATCTCTCTCT CTCTGTCATAGTCTCTCCCTCCCTCTCTCTCTGTCATAGTCTCTCTCTCC CTCTCTCATCTTACACTCTTTGGCTAATGCGATAAACACCCCGCAGGACC GGCACTGGCGGGAGGCTGAGGGACGTGATGGCCACCGGCCGAGGCGCAAA GCCGATCGCGGGAGTCAGCAGCTACTGCGTCGGGAACCTTCGCATCCCCG GCTACCCGCTGCCCTGGGAGGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig15292:2158..6580-

>mRNA_H-elongata_contig15292.3497.1 ID=mRNA_H-elongata_contig15292.3497.1|Name=mRNA_H-elongata_contig15292.3497.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig15292:2158..6580- (Himanthalia elongata Himel1 dioecious)
ATGGACAAGACCCTGTTCAGGCTCGTCAAGGACACGCTCCGAAAGATGGA
CAAGACCCTGTTCAGGCTCGTCAAGGACACGCTCCGAAAGGGCCCTAAGA
GCAACAGCATCATCGCTTTCCACGACAACTCTTCGTCTATCCGCGGCCCG
CGCTGCCAGGTGGCGCTACCGTCCGACCCCGGCAAGCCCTGCGCCGTCCG
GTGCCGAGAGCGCACCCTGCACCCCATCCTCACGGCAGAGTCGCACAACT
TCCCAAGCGGCGTCGCTCCCTTTCCCGGGGCCGAGGCCCTAAGAGCAACA
GCATCATCGCTTTCCACGACAACTCTTCGTCTATCCGCGGCCCGCGCTGC
CAGGTGGCGCTACCGTCCGACCCCGGCAAGCCCTGCGCCGTCCGGTGCCG
AGAGCGCACCCTGCACCCCATCCTCACGGCAGAGTCGCACAACTTCCCAA
GCGGCGTCGCTCCCTTTCCCGGGGCCGAGACCGGCACTGGCGGGAGGCTG
AGGGACGTGATGGCCACCGGCCGAGGCGCAAAGCCGATCGCGGGAGTCAG
CAGCTACTGCGTCGGGAACCTTCGCATCCCCGGCTACCCGCTGCCCTGGG
AGGAGGACCGGCACTGGCGGGAGGCTGAGGGACGTGATGGCCACCGGCCG
AGGCGCAAAGCCGATCGCGGGAGTCAGCAGCTACTGCGTCGGGAACCTTC
GCATCCCCGGCTACCCGCTGCCCTGGGAGGAG
back to top