mRNA_H-elongata_contig152568.3470.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152568.3470.1
Unique NamemRNA_H-elongata_contig152568.3470.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: A0A7S0JW91_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JW91_CAFRO)

HSP 1 Score: 102 bits (253), Expect = 6.330e-26
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    4 TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 144
            TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPET+GI+MIGEIGGQA
Sbjct:   65 TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETEGIIMIGEIGGQA 111
[Close]
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: A0A7S0B0C1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0B0C1_9DINO)

HSP 1 Score: 99.0 bits (245), Expect = 1.130e-25
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 LTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 144
            LTGLGQ+TCVGIGGDPFNGTNFIDCLERF NDPET+GI+MIGEIGG A
Sbjct:    6 LTGLGQTTCVGIGGDPFNGTNFIDCLERFVNDPETEGIIMIGEIGGSA 53
[Close]
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: A0A5A8D5R7_CAFRO (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D5R7_CAFRO)

HSP 1 Score: 102 bits (253), Expect = 9.010e-25
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    4 TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 144
            TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPET+GI+MIGEIGGQA
Sbjct:  199 TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETEGIIMIGEIGGQA 245
[Close]
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: A0A7S2W2Q7_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W2Q7_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.150e-24
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    4 TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 144
            TGLGQSTCVGIGGDPFNGTNF+DCLERFTNDPET+GI+MIGEIGGQA
Sbjct:  193 TGLGQSTCVGIGGDPFNGTNFVDCLERFTNDPETEGIIMIGEIGGQA 239
[Close]
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: B7G0K7_PHATC (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G0K7_PHATC)

HSP 1 Score: 100 bits (250), Expect = 1.880e-24
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 LTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 144
            +TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPET+GI+MIGEIGG A
Sbjct:  172 VTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETEGIIMIGEIGGSA 219
[Close]
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: F0YDA5_AURAN (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDA5_AURAN)

HSP 1 Score: 100 bits (250), Expect = 1.910e-24
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 LTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 144
            +TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPET+GI+MIGEIGG A
Sbjct:  176 VTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETEGIIMIGEIGGSA 223
[Close]
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: A0A7R9WHK5_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WHK5_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.320e-24
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 LTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 144
            +TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDP+T+GI+MIGEIGG A
Sbjct:  134 VTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPQTEGIIMIGEIGGSA 181
[Close]
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: D7FJ40_ECTSI (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ40_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 4.500e-24
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 LTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 144
            +TG+GQSTCVGIGGDPFNGTNFIDCLERFT DPET+GIVMIGEIGGQA
Sbjct:  192 VTGMGQSTCVGIGGDPFNGTNFIDCLERFTKDPETEGIVMIGEIGGQA 239
[Close]
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: A0A1Z5KLA8_FISSO (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLA8_FISSO)

HSP 1 Score: 99.0 bits (245), Expect = 5.050e-24
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 LTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 144
            + GLGQSTCVGIGGDPFNGTNFIDCLERFTNDPET+GI+MIGEIGG A
Sbjct:  134 VAGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETEGIIMIGEIGGSA 181
[Close]
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: A0A7S1CAF8_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CAF8_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.500e-24
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    7 GLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 144
            GLGQSTCVGIGGDPFNGTNFIDCLERFTNDPET+GI+MIGEIGGQA
Sbjct:  209 GLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETEGIIMIGEIGGQA 254
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0JW91_CAFRO6.330e-2695.74Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A7S0B0C1_9DINO1.130e-2589.58Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A5A8D5R7_CAFRO9.010e-2595.74Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S2W2Q7_9STRA1.150e-2493.62Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
B7G0K7_PHATC1.880e-2491.67Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
F0YDA5_AURAN1.910e-2491.67Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7R9WHK5_9STRA2.320e-2489.58Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
D7FJ40_ECTSI4.500e-2491.67Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A1Z5KLA8_FISSO5.050e-2489.58Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S1CAF8_9STRA5.500e-2495.65Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152568contigH-elongata_contig152568:630..788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue4.2e-19
Seed eggNOG ortholog2850.Phatr42015
Preferred nameSCS-alpha
KEGG rclassRC00004,RC00014
KEGG koko:K01899
KEGG ReactionR00432,R00727
KEGG Pathwayko00020,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011
GOsGO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0004776,GO:0005488,GO:0005507,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006104,GO:0006105,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0010035,GO:0010038,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0030312,GO:0031974,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0051186,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0071944,GO:0072350,GO:0072521,GO:1901135,GO:1901360,GO:1901564
EggNOG free text desc.Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate- level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
EggNOG OGs2XEKZ@2836,COG0074@1,KOG1255@2759
EC6.2.1.4,6.2.1.5
COG Functional cat.C
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929901.6056256-CDS-H-elongata_contig152568:629..7881622929901.6056256-CDS-H-elongata_contig152568:629..788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152568 630..788 +
1691679201.2064557-CDS-H-elongata_contig152568:629..7881691679201.2064557-CDS-H-elongata_contig152568:629..788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152568 630..788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152568.3470.1prot_H-elongata_contig152568.3470.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152568 630..788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152568.3470.1

>prot_H-elongata_contig152568.3470.1 ID=prot_H-elongata_contig152568.3470.1|Name=mRNA_H-elongata_contig152568.3470.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
LTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQARA
GL*
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mRNA from alignment at H-elongata_contig152568:630..788+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152568.3470.1 ID=mRNA_H-elongata_contig152568.3470.1|Name=mRNA_H-elongata_contig152568.3470.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig152568:630..788+ (Himanthalia elongata Himel1 dioecious)
TTGACAGGCCTGGGCCAGAGCACGTGCGTCGGCATCGGAGGAGACCCCTT
CAACGGTACGAACTTCATCGACTGTCTTGAGCGATTCACCAACGACCCGG
AAACCAAGGGCATTGTCATGATCGGGGAGATCGGAGGCCAGGCACGCGCG
GGACTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig152568:630..788+

>mRNA_H-elongata_contig152568.3470.1 ID=mRNA_H-elongata_contig152568.3470.1|Name=mRNA_H-elongata_contig152568.3470.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig152568:630..788+ (Himanthalia elongata Himel1 dioecious)
TTGACAGGCCTGGGCCAGAGCACGTGCGTCGGCATCGGAGGAGACCCCTT
CAACGGTACGAACTTCATCGACTGTCTTGAGCGATTCACCAACGACCCGG
AAACCAAGGGCATTGTCATGATCGGGGAGATCGGAGGCCAGGCACGCGCG
GGACTGTGATTGACAGGCCTGGGCCAGAGCACGTGCGTCGGCATCGGAGG
AGACCCCTTCAACGGTACGAACTTCATCGACTGTCTTGAGCGATTCACCA
ACGACCCGGAAACCAAGGGCATTGTCATGATCGGGGAGATCGGAGGCCAG
GCACGCGCGGGACTGTGA
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