prot_H-elongata_contig152568.3470.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig152568.3470.1
Unique Nameprot_H-elongata_contig152568.3470.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length53
Homology
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: A0A7S0JW91_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JW91_CAFRO)

HSP 1 Score: 102 bits (253), Expect = 6.330e-26
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0
Query:    2 TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 48
            TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPET+GI+MIGEIGGQA
Sbjct:   65 TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETEGIIMIGEIGGQA 111          
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: A0A7S0B0C1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0B0C1_9DINO)

HSP 1 Score: 99.0 bits (245), Expect = 1.130e-25
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0
Query:    1 LTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 48
            LTGLGQ+TCVGIGGDPFNGTNFIDCLERF NDPET+GI+MIGEIGG A
Sbjct:    6 LTGLGQTTCVGIGGDPFNGTNFIDCLERFVNDPETEGIIMIGEIGGSA 53          
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: A0A5A8D5R7_CAFRO (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D5R7_CAFRO)

HSP 1 Score: 102 bits (253), Expect = 9.010e-25
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0
Query:    2 TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 48
            TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPET+GI+MIGEIGGQA
Sbjct:  199 TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETEGIIMIGEIGGQA 245          
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: A0A7S2W2Q7_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W2Q7_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.150e-24
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 0
Query:    2 TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 48
            TGLGQSTCVGIGGDPFNGTNF+DCLERFTNDPET+GI+MIGEIGGQA
Sbjct:  193 TGLGQSTCVGIGGDPFNGTNFVDCLERFTNDPETEGIIMIGEIGGQA 239          
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: B7G0K7_PHATC (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G0K7_PHATC)

HSP 1 Score: 100 bits (250), Expect = 1.880e-24
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 0
Query:    1 LTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 48
            +TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPET+GI+MIGEIGG A
Sbjct:  172 VTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETEGIIMIGEIGGSA 219          
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: F0YDA5_AURAN (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDA5_AURAN)

HSP 1 Score: 100 bits (250), Expect = 1.910e-24
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 0
Query:    1 LTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 48
            +TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPET+GI+MIGEIGG A
Sbjct:  176 VTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETEGIIMIGEIGGSA 223          
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: A0A7R9WHK5_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WHK5_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.320e-24
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 0
Query:    1 LTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 48
            +TGLGQSTCVGIGGDPFNGTNFIDCLERFTNDP+T+GI+MIGEIGG A
Sbjct:  134 VTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPQTEGIIMIGEIGGSA 181          
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: D7FJ40_ECTSI (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ40_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 4.500e-24
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 0
Query:    1 LTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 48
            +TG+GQSTCVGIGGDPFNGTNFIDCLERFT DPET+GIVMIGEIGGQA
Sbjct:  192 VTGMGQSTCVGIGGDPFNGTNFIDCLERFTKDPETEGIVMIGEIGGQA 239          
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: A0A1Z5KLA8_FISSO (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLA8_FISSO)

HSP 1 Score: 99.0 bits (245), Expect = 5.050e-24
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0
Query:    1 LTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 48
            + GLGQSTCVGIGGDPFNGTNFIDCLERFTNDPET+GI+MIGEIGG A
Sbjct:  134 VAGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETEGIIMIGEIGGSA 181          
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Match: A0A7S1CAF8_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CAF8_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.500e-24
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 0
Query:    3 GLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQA 48
            GLGQSTCVGIGGDPFNGTNFIDCLERFTNDPET+GI+MIGEIGGQA
Sbjct:  209 GLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETEGIIMIGEIGGQA 254          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152568.3470.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0JW91_CAFRO6.330e-2695.74Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A7S0B0C1_9DINO1.130e-2589.58Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A5A8D5R7_CAFRO9.010e-2595.74Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S2W2Q7_9STRA1.150e-2493.62Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
B7G0K7_PHATC1.880e-2491.67Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
F0YDA5_AURAN1.910e-2491.67Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7R9WHK5_9STRA2.320e-2489.58Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
D7FJ40_ECTSI4.500e-2491.67Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A1Z5KLA8_FISSO5.050e-2489.58Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S1CAF8_9STRA5.500e-2495.65Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01798SCOASYNTHASEcoord: 11..29
score: 68.73
coord: 42..52
score: 41.18
NoneNo IPR availablePANTHERPTHR11117SUCCINYL-COA LIGASE SUBUNIT ALPHAcoord: 2..49
IPR016102Succinyl-CoA synthetase-likeGENE3D3.40.50.261coord: 1..51
e-value: 7.1E-21
score: 76.5
IPR016102Succinyl-CoA synthetase-likeSUPERFAMILY52210Succinyl-CoA synthetase domainscoord: 2..48
IPR005811ATP-citrate lyase/succinyl-CoA ligasePFAMPF00549Ligase_CoAcoord: 3..47
e-value: 1.4E-9
score: 38.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152568contigH-elongata_contig152568:630..788 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152568.3470.1mRNA_H-elongata_contig152568.3470.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig152568 630..788 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig152568.3470.1 ID=prot_H-elongata_contig152568.3470.1|Name=mRNA_H-elongata_contig152568.3470.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
LTGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPETKGIVMIGEIGGQARA
GL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016102Succinyl-CoA_synth-like
IPR005811CoA_ligase