mRNA_H-elongata_contig152515.3467.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152515.3467.1
Unique NamemRNA_H-elongata_contig152515.3467.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: D7FYP5_ECTSI (ADF-H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYP5_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 4.850e-79
Identity = 108/138 (78.26%), Postives = 126/138 (91.30%), Query Frame = 1
Query:    1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQVVIDTFGDKSKTYDDFVACLPPNECRYGVFDLDYITADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELDHIKSQVIRV 414
            TGVTVND  VE FNAFKLHR PH+NRYF+YKIE+  ++++DTFGDK+KTYDDF ACLPPNECRYGVFDLD+ T DGR+ NK++FISWSPDTAKI++KMVYA SKEAIKSAL+GIGIHLQATDQGE+ELD+IKSQV +V
Sbjct:    3 TGVTVNDEAVEMFNAFKLHRAPHDNRYFIYKIENDAEIIVDTFGDKTKTYDDFTACLPPNECRYGVFDLDFTTRDGREANKLIFISWSPDTAKIKNKMVYAASKEAIKSALMGIGIHLQATDQGELELDYIKSQVQKV 140          
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: A0A836CHD0_9STRA (ADF-H domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHD0_9STRA)

HSP 1 Score: 181 bits (460), Expect = 1.770e-56
Identity = 86/139 (61.87%), Postives = 108/139 (77.70%), Query Frame = 1
Query:    1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQ-VVIDTFGDKSKTYDDFVACLPPNECRYGVFDLDYITADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELDHIKSQVIRV 414
            TG+ VND VV  FN FKL +EP N RY+VYKI D+ Q +VIDTFG++  TYDDF + LPP ECRYG+FDLDY T DGR  +K+VFI+W+PD A +++KM+YAGSKE+IK ALVG+G+HLQA D  E+EL  I S V R+
Sbjct:    3 TGIIVNDEVVTQFNLFKLKKEPCNYRYYVYKISDNGQEIVIDTFGERDATYDDFCSKLPPKECRYGLFDLDYDTKDGRSSSKLVFIAWTPDEAAVKNKMMYAGSKESIKGALVGVGVHLQACDASELELATILSSVQRI 141          
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: A0A836C9C2_9STRA (ADF-H domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9C2_9STRA)

HSP 1 Score: 187 bits (475), Expect = 6.020e-56
Identity = 87/140 (62.14%), Postives = 114/140 (81.43%), Query Frame = 1
Query:    1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDS-TQVVIDTFGDKSKTYDDFVACLPPNECRYGVFDLDYIT-ADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELDHIKSQVIRV 414
            TGV+VND VV  FN FKL +EP N+R+++YKI D+  ++VID FG + KTYDDFVACLPPNECRYG+FDL+Y T  + R   K++ I+W+PDTAKI++KM+YAGSK+A+KSALVG+GIHLQATD  E+EL +I + V R+
Sbjct:  221 TGVSVNDAVVTQFNNFKLKKEPDNHRFYIYKISDNGAEIVIDQFGTREKTYDDFVACLPPNECRYGLFDLEYTTKTESRPVEKLILIAWTPDTAKIKNKMMYAGSKDALKSALVGVGIHLQATDASELELQYIINSVSRI 360          
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: K0SV25_THAOC (ADF-H domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SV25_THAOC)

HSP 1 Score: 167 bits (422), Expect = 1.110e-50
Identity = 76/129 (58.91%), Postives = 103/129 (79.84%), Query Frame = 1
Query:    1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQVVIDTFGDKSKTYDDFVACLPPNECRYGVFDLDYITADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELD 387
            TGV V+D V  SFN FKL +EP+  RYF+Y+I++  ++VI + GD+SKTY+DFV  LP N+CRYG+ D+++ T DGR  +KIVFISW+PDTA IR KM+Y+GSKEA+KSALVG+GIH+ ATD  E++ +
Sbjct:    3 TGVAVSDEVSTSFNKFKLGQEPYKLRYFIYEIKNKKEIVISSQGDRSKTYEDFVEELPENDCRYGLIDIEFETDDGRPTSKIVFISWNPDTASIRPKMLYSGSKEALKSALVGVGIHINATDHSELDFE 131          
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: A0A7S1D6V8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D6V8_CYCTE)

HSP 1 Score: 161 bits (407), Expect = 2.120e-48
Identity = 76/129 (58.91%), Postives = 97/129 (75.19%), Query Frame = 1
Query:    1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQVVIDTFGDKSKTYDDFVACLPPNECRYGVFDLDYITADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELD 387
            TGV V D V  +FN FKL R     RYF+Y IE+   +VI+  G++SKTYDDFVA LP N+CRYG+ DL++ T DGR  +KIVFISW+PDTA +R KM+Y+GSKEAIKS L G+GIH+ ATD  E++L+
Sbjct:    3 TGVIVGDDVSFAFNEFKLQRGDFKLRYFIYSIENKKTIVIEKQGERSKTYDDFVADLPENDCRYGLIDLEFETDDGRPTSKIVFISWNPDTASVRPKMLYSGSKEAIKSVLTGVGIHINATDYSELDLE 131          
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: B8C0E9_THAPS (The actin binding protein cofilin-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0E9_THAPS)

HSP 1 Score: 159 bits (403), Expect = 8.590e-48
Identity = 73/129 (56.59%), Postives = 100/129 (77.52%), Query Frame = 1
Query:    1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQVVIDTFGDKSKTYDDFVACLPPNECRYGVFDLDYITADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELD 387
            TGV V+D V  SF  FKL +EP+  RYFVY+I++   +VI+  G+ SKTY+DFV  LP N+CRYG+ D+++ T DGR  +K+VFISW+PDTA +R KM+Y+GSKEA+KSALVG+GIH+ ATD  E++ +
Sbjct:    3 TGVAVDDEVSASFQKFKLGQEPYKLRYFVYEIKNKKTIVIEKQGELSKTYEDFVEELPENDCRYGLIDIEFETDDGRPTSKLVFISWNPDTASVRPKMLYSGSKEALKSALVGVGIHINATDHSELDFE 131          
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: A0A6T5XBY3_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6T5XBY3_9STRA)

HSP 1 Score: 159 bits (403), Expect = 8.590e-48
Identity = 73/129 (56.59%), Postives = 99/129 (76.74%), Query Frame = 1
Query:    1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQVVIDTFGDKSKTYDDFVACLPPNECRYGVFDLDYITADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELD 387
            TGV  +D V E+F  FKL +EP   RYF+Y I+D  ++VI+  G++ KTYDDFV  LP N+CRYG+ DL++ + DGR  +K+VFI+W+PDTA IR KM+Y+GSKEAIKSALVG+GI + ATD  E++L+
Sbjct:    3 TGVRCHDDVAEAFTKFKLQQEPFKLRYFIYVIKDKKEIVIEKQGEREKTYDDFVENLPENDCRYGLLDLEFESDDGRPTSKLVFITWNPDTAPIRSKMLYSGSKEAIKSALVGVGIQINATDASELDLE 131          
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: A0A067C057_SAPPC (ADF-H domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C057_SAPPC)

HSP 1 Score: 159 bits (403), Expect = 8.860e-48
Identity = 77/137 (56.20%), Postives = 101/137 (73.72%), Query Frame = 1
Query:    1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQVVIDTFGDKSKTYDDFVACL--PPNECRYGVFDLDYITADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELDHIKSQV 405
            +GV V+D VV  FN FKL + P+N RYF+YKIE  +++VI+  G++S+TYDDF A L    NECRYG+ DLD+ T DGR  +K+VFISWSPDTA+++ KM+YA SKEAIK  LVG+GI+L ATD  E+    I+  V
Sbjct:    3 SGVGVSDDVVTEFNDFKLQKAPYNFRYFIYKIEGDSEIVIEHRGERSETYDDFAAKLNATTNECRYGLIDLDFTTKDGRPTSKLVFISWSPDTARVKSKMLYASSKEAIKRGLVGVGIYLSATDASELSFSSIQDGV 139          
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: A0A1V9ZSG9_9STRA (Actin-depolymerizing factor n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSG9_9STRA)

HSP 1 Score: 158 bits (400), Expect = 2.700e-47
Identity = 78/137 (56.93%), Postives = 103/137 (75.18%), Query Frame = 1
Query:    1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQVVIDTFGDKSKTYDDFVACLPP--NECRYGVFDLDYITADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELDHIKSQV 405
            +GV V+D VV  FN FKL R P+N RYF+YKIE+S++VVI+  G++++TY+DF   L    +ECRYG+ DLD+ T DGR  +K+VFISWSPDTAKI+ KM+YA SKEAIK  LVG+GI+L ATD  E+ +  I+  V
Sbjct:    5 SGVGVHDDVVTEFNDFKLQRAPYNFRYFIYKIENSSEVVIEHRGERTETYEDFATKLKSIGDECRYGLIDLDFTTKDGRPTSKLVFISWSPDTAKIKSKMLYASSKEAIKRCLVGVGIYLSATDASELSMAAIEDGV 141          
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: A0A7S0GMG6_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S0GMG6_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.070e-46
Identity = 70/137 (51.09%), Postives = 101/137 (73.72%), Query Frame = 1
Query:    1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQVVIDTFGDKSKTYDDFVACLPPNECRYGVFDLDYITADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELDHIKSQVIR 411
            TGVT +  V  SF+ FKL + P + RYF+Y I+D   +++++ G + KTY+DF+A  P N+CRYG+ DLD+ T DGR  +K+VFISW+PDTA IR KM+++GSKEAIK+AL G+GIH+ ATD  E++++     V+R
Sbjct:    3 TGVTAHADVTTSFSQFKLQQAPFDIRYFIYTIKDKKTIIVESQGSRDKTYEDFMAAFPENDCRYGLIDLDFETVDGRPTSKLVFISWNPDTASIRPKMLFSGSKEAIKAALPGVGIHINATDFAELDMETSILPVVR 139          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYP5_ECTSI4.850e-7978.26ADF-H domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A836CHD0_9STRA1.770e-5661.87ADF-H domain-containing protein n=1 Tax=Tribonema ... [more]
A0A836C9C2_9STRA6.020e-5662.14ADF-H domain-containing protein n=1 Tax=Tribonema ... [more]
K0SV25_THAOC1.110e-5058.91ADF-H domain-containing protein n=1 Tax=Thalassios... [more]
A0A7S1D6V8_CYCTE2.120e-4858.91Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
B8C0E9_THAPS8.590e-4856.59The actin binding protein cofilin-like protein n=1... [more]
A0A6T5XBY3_9STRA8.590e-4856.59Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A067C057_SAPPC8.860e-4856.20ADF-H domain-containing protein n=2 Tax=Saprolegni... [more]
A0A1V9ZSG9_9STRA2.700e-4756.93Actin-depolymerizing factor n=1 Tax=Achlya hypogyn... [more]
A0A7S0GMG6_9STRA2.070e-4651.09Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152515contigH-elongata_contig152515:211..1128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.4
Seed ortholog evalue2e-60
Seed eggNOG ortholog2880.D7FYP5
KEGG koko:K05765
KEGG Pathwayko04360,ko04666,ko04810,ko05133,map04360,map04666,map04810,map05133
EggNOG free text desc.actin filament depolymerization
EggNOG OGsKOG1735@1,KOG1735@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionActin-depolymerising factor homology domain
Ec32 orthologEc-26_004230.1
Exons2
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929901.2909129-CDS-H-elongata_contig152515:210..5221622929901.2909129-CDS-H-elongata_contig152515:210..522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152515 211..522 +
1691679201.0547967-CDS-H-elongata_contig152515:210..5221691679201.0547967-CDS-H-elongata_contig152515:210..522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152515 211..522 +
1622929901.307167-CDS-H-elongata_contig152515:1023..11281622929901.307167-CDS-H-elongata_contig152515:1023..1128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152515 1024..1128 +
1691679201.0685833-CDS-H-elongata_contig152515:1023..11281691679201.0685833-CDS-H-elongata_contig152515:1023..1128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152515 1024..1128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152515.3467.1prot_H-elongata_contig152515.3467.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152515 211..1128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152515.3467.1

>prot_H-elongata_contig152515.3467.1 ID=prot_H-elongata_contig152515.3467.1|Name=mRNA_H-elongata_contig152515.3467.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQVVIDTFGDKSKTY
DDFVACLPPNECRYGVFDLDYITADGRQGNKIVFISWSPDTAKIRHKMVY
AGSKEAIKSALVGIGIHLQATDQGEIELDHIKSQVIRV*
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mRNA from alignment at H-elongata_contig152515:211..1128+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152515.3467.1 ID=mRNA_H-elongata_contig152515.3467.1|Name=mRNA_H-elongata_contig152515.3467.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=918bp|location=Sequence derived from alignment at H-elongata_contig152515:211..1128+ (Himanthalia elongata Himel1 dioecious)
ACCGGTGTTACTGTAAACGATACCGTAGTGGAGTCATTCAACGCCTTCAA GCTGCACCGCGAGCCGCACAACAACCGATACTTCGTGTACAAGATCGAGG ACAGCACCCAGGTGGTGATCGACACCTTCGGAGACAAGTCCAAGACTTAC GACGATTTCGTCGCATGCCTGCCCCCGAACGAATGCCGCTACGGTGTGTT TGACCTAGACTACATCACCGCCGACGGACGCCAAGGGAACAAAATCGTGT TCATCTCGTGGTCGCCCGACACGGCCAAGATCAGGCACAAGATGGTCTAC GCCGGCTCGAAGGTAACGCTCTCGATCTCTCAATCCTATAGCCTCTCTCG CGTTGTTGTCTCCCCGGGGTTTCATTCAATGTTGGCGTGTGTTTTTTTCT TGATTCTCCACGGACGCTTCGTAAAGCTCACGGCCACGGTCGTGTTAAAT AAGTCATTTCGCCGTCGTTGTAATTCGATTCCGATAGCGGCTTTCAAGGC TCGAACTGTGACTAGATCGCGTCGATGGCCCAAACCGTCTTTTAATCGAG AGCTTCGAAGAGGCTTTGGAGGCACGATGCCTTGAGACGGTGTGTGAACA TCGGAGTTCGTTGTGTATGCTTGTGGAGGCGTAGTCGCCAATGTGATGCC TTGAGACGGTAGCTTCCCCCGCGGAAAATGCTTCAGCAGAAAAATATGTA ACACTTTTATGAGGCACTGCGAGTGTCCCTGAAGCAGCCCACATGTTCAT AACACGCTGCCCTGATTACATCTCTGGTCTGTTCCATTGCCGTCTGTTTG TTTTGCCGAACAGGAAGCCATCAAGTCTGCACTCGTTGGCATTGGGATTC ACCTGCAGGCGACGGACCAGGGGGAGATTGAACTTGATCACATCAAGTCC CAAGTCATAAGAGTCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig152515:211..1128+

>mRNA_H-elongata_contig152515.3467.1 ID=mRNA_H-elongata_contig152515.3467.1|Name=mRNA_H-elongata_contig152515.3467.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig152515:211..1128+ (Himanthalia elongata Himel1 dioecious)
ACCGGTGTTACTGTAAACGATACCGTAGTGGAGTCATTCAACGCCTTCAA
GCTGCACCGCGAGCCGCACAACAACCGATACTTCGTGTACAAGATCGAGG
ACAGCACCCAGGTGGTGATCGACACCTTCGGAGACAAGTCCAAGACTTAC
GACGATTTCGTCGCATGCCTGCCCCCGAACGAATGCCGCTACGGTGTGTT
TGACCTAGACTACATCACCGCCGACGGACGCCAAGGGAACAAAATCGTGT
TCATCTCGTGGTCGCCCGACACGGCCAAGATCAGGCACAAGATGGTCTAC
GCCGGCTCGAAGACCGGTGTTACTGTAAACGATACCGTAGTGGAGTCATT
CAACGCCTTCAAGCTGCACCGCGAGCCGCACAACAACCGATACTTCGTGT
ACAAGATCGAGGACAGCACCCAGGTGGTGATCGACACCTTCGGAGACAAG
TCCAAGACTTACGACGATTTCGTCGCATGCCTGCCCCCGAACGAATGCCG
CTACGGTGTGTTTGACCTAGACTACATCACCGCCGACGGACGCCAAGGGA
ACAAAATCGTGTTCATCTCGTGGTCGCCCGACACGGCCAAGATCAGGCAC
AAGATGGTCTACGCCGGCTCGAAGGAAGCCATCAAGTCTGCACTCGTTGG
CATTGGGATTCACCTGCAGGCGACGGACCAGGGGGAGATTGAACTTGATC
ACATCAAGTCCCAAGTCATAAGAGTCTAAGAAGCCATCAAGTCTGCACTC
GTTGGCATTGGGATTCACCTGCAGGCGACGGACCAGGGGGAGATTGAACT
TGATCACATCAAGTCCCAAGTCATAAGAGTCTAA
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