mRNA_H-elongata_contig152515.3467.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: D7FYP5_ECTSI (ADF-H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYP5_ECTSI) HSP 1 Score: 238 bits (608), Expect = 4.850e-79 Identity = 108/138 (78.26%), Postives = 126/138 (91.30%), Query Frame = 1
Query: 1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQVVIDTFGDKSKTYDDFVACLPPNECRYGVFDLDYITADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELDHIKSQVIRV 414
TGVTVND VE FNAFKLHR PH+NRYF+YKIE+ ++++DTFGDK+KTYDDF ACLPPNECRYGVFDLD+ T DGR+ NK++FISWSPDTAKI++KMVYA SKEAIKSAL+GIGIHLQATDQGE+ELD+IKSQV +V
Sbjct: 3 TGVTVNDEAVEMFNAFKLHRAPHDNRYFIYKIENDAEIIVDTFGDKTKTYDDFTACLPPNECRYGVFDLDFTTRDGREANKLIFISWSPDTAKIKNKMVYAASKEAIKSALMGIGIHLQATDQGELELDYIKSQVQKV 140
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: A0A836CHD0_9STRA (ADF-H domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHD0_9STRA) HSP 1 Score: 181 bits (460), Expect = 1.770e-56 Identity = 86/139 (61.87%), Postives = 108/139 (77.70%), Query Frame = 1
Query: 1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQ-VVIDTFGDKSKTYDDFVACLPPNECRYGVFDLDYITADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELDHIKSQVIRV 414
TG+ VND VV FN FKL +EP N RY+VYKI D+ Q +VIDTFG++ TYDDF + LPP ECRYG+FDLDY T DGR +K+VFI+W+PD A +++KM+YAGSKE+IK ALVG+G+HLQA D E+EL I S V R+
Sbjct: 3 TGIIVNDEVVTQFNLFKLKKEPCNYRYYVYKISDNGQEIVIDTFGERDATYDDFCSKLPPKECRYGLFDLDYDTKDGRSSSKLVFIAWTPDEAAVKNKMMYAGSKESIKGALVGVGVHLQACDASELELATILSSVQRI 141
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: A0A836C9C2_9STRA (ADF-H domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9C2_9STRA) HSP 1 Score: 187 bits (475), Expect = 6.020e-56 Identity = 87/140 (62.14%), Postives = 114/140 (81.43%), Query Frame = 1
Query: 1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDS-TQVVIDTFGDKSKTYDDFVACLPPNECRYGVFDLDYIT-ADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELDHIKSQVIRV 414
TGV+VND VV FN FKL +EP N+R+++YKI D+ ++VID FG + KTYDDFVACLPPNECRYG+FDL+Y T + R K++ I+W+PDTAKI++KM+YAGSK+A+KSALVG+GIHLQATD E+EL +I + V R+
Sbjct: 221 TGVSVNDAVVTQFNNFKLKKEPDNHRFYIYKISDNGAEIVIDQFGTREKTYDDFVACLPPNECRYGLFDLEYTTKTESRPVEKLILIAWTPDTAKIKNKMMYAGSKDALKSALVGVGIHLQATDASELELQYIINSVSRI 360
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: K0SV25_THAOC (ADF-H domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SV25_THAOC) HSP 1 Score: 167 bits (422), Expect = 1.110e-50 Identity = 76/129 (58.91%), Postives = 103/129 (79.84%), Query Frame = 1
Query: 1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQVVIDTFGDKSKTYDDFVACLPPNECRYGVFDLDYITADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELD 387
TGV V+D V SFN FKL +EP+ RYF+Y+I++ ++VI + GD+SKTY+DFV LP N+CRYG+ D+++ T DGR +KIVFISW+PDTA IR KM+Y+GSKEA+KSALVG+GIH+ ATD E++ +
Sbjct: 3 TGVAVSDEVSTSFNKFKLGQEPYKLRYFIYEIKNKKEIVISSQGDRSKTYEDFVEELPENDCRYGLIDIEFETDDGRPTSKIVFISWNPDTASIRPKMLYSGSKEALKSALVGVGIHINATDHSELDFE 131
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: A0A7S1D6V8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D6V8_CYCTE) HSP 1 Score: 161 bits (407), Expect = 2.120e-48 Identity = 76/129 (58.91%), Postives = 97/129 (75.19%), Query Frame = 1
Query: 1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQVVIDTFGDKSKTYDDFVACLPPNECRYGVFDLDYITADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELD 387
TGV V D V +FN FKL R RYF+Y IE+ +VI+ G++SKTYDDFVA LP N+CRYG+ DL++ T DGR +KIVFISW+PDTA +R KM+Y+GSKEAIKS L G+GIH+ ATD E++L+
Sbjct: 3 TGVIVGDDVSFAFNEFKLQRGDFKLRYFIYSIENKKTIVIEKQGERSKTYDDFVADLPENDCRYGLIDLEFETDDGRPTSKIVFISWNPDTASVRPKMLYSGSKEAIKSVLTGVGIHINATDYSELDLE 131
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: B8C0E9_THAPS (The actin binding protein cofilin-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0E9_THAPS) HSP 1 Score: 159 bits (403), Expect = 8.590e-48 Identity = 73/129 (56.59%), Postives = 100/129 (77.52%), Query Frame = 1
Query: 1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQVVIDTFGDKSKTYDDFVACLPPNECRYGVFDLDYITADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELD 387
TGV V+D V SF FKL +EP+ RYFVY+I++ +VI+ G+ SKTY+DFV LP N+CRYG+ D+++ T DGR +K+VFISW+PDTA +R KM+Y+GSKEA+KSALVG+GIH+ ATD E++ +
Sbjct: 3 TGVAVDDEVSASFQKFKLGQEPYKLRYFVYEIKNKKTIVIEKQGELSKTYEDFVEELPENDCRYGLIDIEFETDDGRPTSKLVFISWNPDTASVRPKMLYSGSKEALKSALVGVGIHINATDHSELDFE 131
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: A0A6T5XBY3_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6T5XBY3_9STRA) HSP 1 Score: 159 bits (403), Expect = 8.590e-48 Identity = 73/129 (56.59%), Postives = 99/129 (76.74%), Query Frame = 1
Query: 1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQVVIDTFGDKSKTYDDFVACLPPNECRYGVFDLDYITADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELD 387
TGV +D V E+F FKL +EP RYF+Y I+D ++VI+ G++ KTYDDFV LP N+CRYG+ DL++ + DGR +K+VFI+W+PDTA IR KM+Y+GSKEAIKSALVG+GI + ATD E++L+
Sbjct: 3 TGVRCHDDVAEAFTKFKLQQEPFKLRYFIYVIKDKKEIVIEKQGEREKTYDDFVENLPENDCRYGLLDLEFESDDGRPTSKLVFITWNPDTAPIRSKMLYSGSKEAIKSALVGVGIQINATDASELDLE 131
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: A0A067C057_SAPPC (ADF-H domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C057_SAPPC) HSP 1 Score: 159 bits (403), Expect = 8.860e-48 Identity = 77/137 (56.20%), Postives = 101/137 (73.72%), Query Frame = 1
Query: 1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQVVIDTFGDKSKTYDDFVACL--PPNECRYGVFDLDYITADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELDHIKSQV 405
+GV V+D VV FN FKL + P+N RYF+YKIE +++VI+ G++S+TYDDF A L NECRYG+ DLD+ T DGR +K+VFISWSPDTA+++ KM+YA SKEAIK LVG+GI+L ATD E+ I+ V
Sbjct: 3 SGVGVSDDVVTEFNDFKLQKAPYNFRYFIYKIEGDSEIVIEHRGERSETYDDFAAKLNATTNECRYGLIDLDFTTKDGRPTSKLVFISWSPDTARVKSKMLYASSKEAIKRGLVGVGIYLSATDASELSFSSIQDGV 139
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: A0A1V9ZSG9_9STRA (Actin-depolymerizing factor n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSG9_9STRA) HSP 1 Score: 158 bits (400), Expect = 2.700e-47 Identity = 78/137 (56.93%), Postives = 103/137 (75.18%), Query Frame = 1
Query: 1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQVVIDTFGDKSKTYDDFVACLPP--NECRYGVFDLDYITADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELDHIKSQV 405
+GV V+D VV FN FKL R P+N RYF+YKIE+S++VVI+ G++++TY+DF L +ECRYG+ DLD+ T DGR +K+VFISWSPDTAKI+ KM+YA SKEAIK LVG+GI+L ATD E+ + I+ V
Sbjct: 5 SGVGVHDDVVTEFNDFKLQRAPYNFRYFIYKIENSSEVVIEHRGERTETYEDFATKLKSIGDECRYGLIDLDFTTKDGRPTSKLVFISWSPDTAKIKSKMLYASSKEAIKRCLVGVGIYLSATDASELSMAAIEDGV 141
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Match: A0A7S0GMG6_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S0GMG6_9STRA) HSP 1 Score: 156 bits (394), Expect = 2.070e-46 Identity = 70/137 (51.09%), Postives = 101/137 (73.72%), Query Frame = 1
Query: 1 TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQVVIDTFGDKSKTYDDFVACLPPNECRYGVFDLDYITADGRQGNKIVFISWSPDTAKIRHKMVYAGSKEAIKSALVGIGIHLQATDQGEIELDHIKSQVIR 411
TGVT + V SF+ FKL + P + RYF+Y I+D +++++ G + KTY+DF+A P N+CRYG+ DLD+ T DGR +K+VFISW+PDTA IR KM+++GSKEAIK+AL G+GIH+ ATD E++++ V+R
Sbjct: 3 TGVTAHADVTTSFSQFKLQQAPFDIRYFIYTIKDKKTIIVESQGSRDKTYEDFMAAFPENDCRYGLIDLDFETVDGRPTSKLVFISWNPDTASIRPKMLFSGSKEAIKAALPGVGIHINATDFAELDMETSILPVVR 139 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152515.3467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig152515.3467.1 >prot_H-elongata_contig152515.3467.1 ID=prot_H-elongata_contig152515.3467.1|Name=mRNA_H-elongata_contig152515.3467.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp TGVTVNDTVVESFNAFKLHREPHNNRYFVYKIEDSTQVVIDTFGDKSKTYback to top mRNA from alignment at H-elongata_contig152515:211..1128+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig152515.3467.1 ID=mRNA_H-elongata_contig152515.3467.1|Name=mRNA_H-elongata_contig152515.3467.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=918bp|location=Sequence derived from alignment at H-elongata_contig152515:211..1128+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig152515:211..1128+ >mRNA_H-elongata_contig152515.3467.1 ID=mRNA_H-elongata_contig152515.3467.1|Name=mRNA_H-elongata_contig152515.3467.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig152515:211..1128+ (Himanthalia elongata Himel1 dioecious)back to top |