prot_H-elongata_contig152256.3453.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig152256.3453.1
Unique Nameprot_H-elongata_contig152256.3453.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length58
Homology
BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: D7FME5_ECTSI (5'-3' exoribonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME5_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 4.680e-33
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 0
Query:    1 RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDL 57
            RYYFEKFGITPLHT++H+RLRAAYVEGL+WCLAYYYRGCVSW WFFPFHYVPMISDL
Sbjct:  432 RYYFEKFGITPLHTEIHDRLRAAYVEGLLWCLAYYYRGCVSWGWFFPFHYVPMISDL 488          
BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: A0A7S2RYD9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RYD9_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.300e-24
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 0
Query:    1 RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDL 57
            RYY+EK  +TP   + H +LR AY+EGLVWCLAYYYRGC+SW WF+P+HY PM+SDL
Sbjct:  153 RYYYEKLKLTPADVEGHLKLRQAYIEGLVWCLAYYYRGCISWGWFYPYHYGPMLSDL 209          
BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: A0A7S1V112_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V112_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 8.660e-24
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 0
Query:    1 RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDL 57
            RYYFEK  +TP+    H  LR AY+EGL+WCLAYYY+GC+SW WF+P+H+ PM+SDL
Sbjct:   44 RYYFEKLKLTPVDKQEHYALRQAYIEGLMWCLAYYYKGCISWGWFYPYHFGPMLSDL 100          
BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: A0A448ZS96_9STRA (5'-3' exoribonuclease 1 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZS96_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.530e-23
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 0
Query:    1 RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDL 57
            RYYFEK  +TP+    H  LR AY+EGL+WCLAYYYRGC+SW WFFP+HY PM+SDL
Sbjct:  439 RYYFEKLKLTPVDVSGHHALRQAYMEGLIWCLAYYYRGCISWGWFFPYHYGPMLSDL 495          
BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: A0A6V1PVC7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PVC7_HETAK)

HSP 1 Score: 100 bits (248), Expect = 3.460e-23
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 0
Query:    2 YYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDL 57
            YY EK G+ P H   H+RLR AY+EGL+WCLAYYY GCVSW WF+P+HY P+ISDL
Sbjct:  306 YYMEKLGLAPNHHQFHDRLRQAYIEGLIWCLAYYYEGCVSWGWFYPYHYGPLISDL 361          
BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: A0A835Z4G8_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 8.790e-23
Identity = 43/57 (75.44%), Postives = 45/57 (78.95%), Query Frame = 0
Query:    1 RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDL 57
            RYYFEKFGITP+HT VH  LR  YV GL WCLA    GCVSW WFFPFHYVPM+SDL
Sbjct:  432 RYYFEKFGITPVHTQVHSELRHQYVAGLQWCLA----GCVSWEWFFPFHYVPMLSDL 484          
BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: A0A7S1UGZ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGZ5_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.070e-22
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 0
Query:    1 RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDL 57
            RYY+EK G+ P  T V +RL  +YVEGL+WCLAYYYRGCVSWSWF+PFHY P +SDL
Sbjct:  255 RYYYEKLGLLPNDTAVLQRLLRSYVEGLLWCLAYYYRGCVSWSWFYPFHYGPFLSDL 311          
BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: A0A7S2KWL2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KWL2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.250e-22
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 0
Query:    1 RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDLV 58
            RYY++KFG TP   + H  LR AY+EGLVW L YYYRGC SW W++P+HY PMISDLV
Sbjct:  177 RYYYDKFGFTPFDAEKHLALRKAYLEGLVWTLEYYYRGCPSWEWYYPYHYGPMISDLV 234          
BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: A0A7S4EG33_9STRA (5'-3' exoribonuclease 1 n=4 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG33_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.640e-22
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 0
Query:    1 RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDL 57
            RYYFEK  +TPL  +    LR AY+EGL+WCLAYYYRGC+SW WFFP+HY PM+SDL
Sbjct:  439 RYYFEKMKLTPLDLEGQYALRQAYMEGLIWCLAYYYRGCISWGWFFPYHYGPMLSDL 495          
BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Match: A0A7S2PSP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PSP2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.240e-22
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 0
Query:    1 RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHYVPMISDL 57
            RYYFEK  + P   D H  LR +Y+EGL+WCLAYYYRGC+SW WF+P+HY PMISDL
Sbjct:  448 RYYFEKLHLKPTDVDDHLALRKSYIEGLIWCLAYYYRGCISWGWFYPYHYGPMISDL 504          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152256.3453.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FME5_ECTSI4.680e-3391.235'-3' exoribonuclease 1 n=1 Tax=Ectocarpus silicul... [more]
A0A7S2RYD9_9STRA1.300e-2466.67Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S1V112_9STRA8.660e-2463.16Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A448ZS96_9STRA2.530e-2368.425'-3' exoribonuclease 1 n=1 Tax=Pseudo-nitzschia m... [more]
A0A6V1PVC7_HETAK3.460e-2367.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z4G8_9STRA8.790e-2375.44XRN 5'-3' exonuclease N-terminus-domain-containing... [more]
A0A7S1UGZ5_9STRA1.070e-2270.18Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2KWL2_9STRA1.250e-2265.52Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S4EG33_9STRA1.640e-2268.425'-3' exoribonuclease 1 n=4 Tax=Pseudo-nitzschia a... [more]
A0A7S2PSP2_9STRA2.240e-2266.67Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041412Xrn1, helical domainPFAMPF17846XRN_Mcoord: 1..57
e-value: 3.2E-22
score: 79.1
NoneNo IPR availablePANTHERPTHR12341:SF415'-3' EXORIBONUCLEASE 2coord: 1..57
IPR0270735'-3' exoribonucleasePANTHERPTHR123415'->3' EXORIBONUCLEASEcoord: 1..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152256contigH-elongata_contig152256:107..280 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152256.3453.1mRNA_H-elongata_contig152256.3453.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig152256 107..280 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig152256.3453.1 ID=prot_H-elongata_contig152256.3453.1|Name=mRNA_H-elongata_contig152256.3453.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
RYYFEKFGITPLHTDVHERLRAAYVEGLVWCLAYYYRGCVSWSWFFPFHY
VPMISDLV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041412Xrn1_helical
IPR0270735_3_exoribonuclease