mRNA_H-elongata_contig15224.3450.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE) HSP 1 Score: 132 bits (333), Expect = 4.160e-33 Identity = 68/147 (46.26%), Postives = 92/147 (62.59%), Query Frame = 1
Query: 4 GSRWEVVCSGC---NKCTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTGPYCSVCTNHYVKGSGFTCTECSENVWGIAAAVIAIIFAIMIAFDVIKYIISADM 435
G R++ VC GC N +VE +P C ++DHT+S+GG TT+ TL + +GYWRATN S NVLACYN+DAC GG+T FC GY GPYCSVC+ Y FTCTEC ++ GIA V+ +F + A + +++S +M
Sbjct: 1270 GDRYQTVCDGCPVNNSDWIVSVENGDRVPICVVQLDHTRSEGG-DTTIETLELSSGYWRATNDSANVLACYNEDACVGGMTNDPAFCQRGYEGPYCSVCSEGYSMSLAFTCTECVDDHGGIAIMVVVGVFVLGAAIALCMHLVSGEM 1415
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 120 bits (302), Expect = 5.990e-29 Identity = 61/139 (43.88%), Postives = 82/139 (58.99%), Query Frame = 1
Query: 4 GSRWEVVCSGCNKCTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTGPYCSVCTNHYVKGSGFTCTECSENVWGIAAAVIAIIFAIMIAFDVIKYI 420
G + CSGC V+ + +P CS I H++S GG TL TL+ID GYWRATN ST VLACYN DAC GG+TG+ ++C GY GPYC++C++ Y GFTC++C GI A + + V+ Y+
Sbjct: 516 GDALDEACSGCQTTCDGCVQPPV-VPLCSDVIPHSRSDGGL-VTLETLSIDPGYWRATNSSTEVLACYNVDACVGGITGATEYCVEGYEGPYCAICSDDYSAQLGFTCSKCPNRAGGILLATALAVIGLFTVVAVVSYV 652
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI) HSP 1 Score: 120 bits (300), Expect = 1.150e-28 Identity = 61/144 (42.36%), Postives = 88/144 (61.11%), Query Frame = 1
Query: 13 WEVVCSGCN-KCTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTGPYCSVCTNHYVKGSGFTCTECSE-NVWGIAAAVIAIIFAIMIAFDVIKYIISADMG 438
+EV+CSGC C C + L +P C+ ++H S GG + TL L+ID+GYWRAT S +VLACY+ +AC GG+T + +C GY GPYCSVC+N Y + GF C++C E N GI V+ + ++ + Y+ S + G
Sbjct: 1121 FEVMCSGCEVTCEGCVFDEGLLVPACTEVMEHATSDGG-NITLEALSIDSGYWRATESSEDVLACYHAEACLGGVTATSGYCLEGYEGPYCSVCSNGYSEQLGFVCSKCPEKNTGGIVILVVLAVGTTIVLAAIYSYVTSGEDG 1263
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE) HSP 1 Score: 115 bits (287), Expect = 6.150e-27 Identity = 60/140 (42.86%), Postives = 81/140 (57.86%), Query Frame = 1
Query: 4 GSRWEVVCSGCNK-CTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTGPYCSVCTNHYVKGSGFTCTECSENVWGIAAAVIAIIFAIMIAFDVIKYI 420
G + CSGC C C + ++P CS I ++S GG TL TL ID GYW ATN ST VLACYN DAC GG+TG+ ++C GY GPYC++C++ Y GFTC++C + GI A + + V+ Y+
Sbjct: 523 GDPLDEACSGCQATCDGCA--QPPAVPLCSDVIPDSRSDGGL-VTLETLLIDPGYWMATNSSTEVLACYNVDACVGGITGATEYCVEGYEGPYCAICSDDYSVQLGFTCSKCPDRAGGILLATALAVIGLFTVAAVVSYV 659
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: D7FRV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV1_ECTSI) HSP 1 Score: 113 bits (283), Expect = 2.170e-26 Identity = 59/144 (40.97%), Postives = 87/144 (60.42%), Query Frame = 1
Query: 4 GSRWEVVCSGCNKCTS-CTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTGPYCSVCTNHYVKGSGFTCTECSENVWGIAAAVIAIIFAIMIAFDVIKYIISAD 432
G R+E VC GC T+ E +PTC+ +++T+S G +T++ + ID GYWRAT +T VLACYN DAC GG+TG +C GY GPYC++CT +Y + F CT+CS G+A VI + + ++ Y++S +
Sbjct: 541 GGRYEAVCDGCPAADDGITMGVENLVPTCTETLENTRSDGA-NTSIEDIRIDPGYWRATTTTTTVLACYNADACLGGITGEAGYCREGYYGPYCAICTENYGRTMAFECTKCSSGE-GVAVGVIFVSALAVGGAALVAYLVSNE 682
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: A0A6H5JMC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMC1_9PHAE) HSP 1 Score: 113 bits (283), Expect = 2.190e-26 Identity = 59/153 (38.56%), Postives = 87/153 (56.86%), Query Frame = 1
Query: 4 GSRWEVVCSGCNKCTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTG----------PYCSVCTNHYVKGSGFTCTECSENVWGIAAAVIAIIFAIMIAFDVIKYIISAD 432
G R+ VCSGC +C C V +PTC+ DH +S G T+ TL+ID GYWRAT S N+LAC+N DAC GG TG+ D+C GY G P C+VC++ + + FTC+ CS+ A++A+ +++ + Y++S +
Sbjct: 662 GDRYSNVCSGCEECNDCDVADNSEVPTCTITPDHAQSTGS---TVETLSIDRGYWRATPSSRNILACHNADACLGGETGAADYCAEGYEGALKSVSCTREPDCAVCSDGFAESLSFTCSNCSDGK-ATVVALVALPIMVILGLIFLVYMVSKE 810
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 113 bits (283), Expect = 2.200e-26 Identity = 60/146 (41.10%), Postives = 81/146 (55.48%), Query Frame = 1
Query: 4 GSRWEVVCSGCNK-CTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTGPYCSVCTNHYVKGSGFTCTECSENVWGIAAAVIAIIFAIMIAFDVIKYIISADMG 438
G+ +E C GC C C E + PTC+ ++H S GG + TL L ++ GYWRA+ S V ACYN DAC GG+TG +C GY GPYC+VC++ Y F CT CS IA A + + + +AF V Y +S +G
Sbjct: 754 GNPYEAACGGCETACDGCFFEPPVP-PTCTDVMEHITSAGG-TVTLEDLPVERGYWRASPSSEEVFACYNSDACLGGVTGRAGYCLKGYEGPYCAVCSDGYTTELAFACTRCSGGAGRIALAAVLAVVVLCVAFAVASYAMSGRVG 897
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE) HSP 1 Score: 105 bits (263), Expect = 1.070e-23 Identity = 61/147 (41.50%), Postives = 81/147 (55.10%), Query Frame = 1
Query: 7 SRWEVVCSGC---NKCTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTGPYCSVCTNHYVKGSGFTCTECS--ENVWGIAAAVIAIIFAIMIAFDVIKYIISAD 432
+R+ VC C + + R P C++ ++H+ S TL TL+ID GYWRATN S +LACYN DAC GG TGSE FC GY GPYC+VC + CT CS +AA VIA I A++ V +Y++S +
Sbjct: 499 ARFGTVCFDCPPWDDSAGNDITRGTVTPECAAPLEHS-SADAVGATLETLSIDKGYWRATNESDRILACYNADACSGGQTGSESFCASGYMGPYCAVCEPRHSSSLAHNCTRCSGSRRQGLLAATVIAAIAAVLAIAAVSRYLLSTE 644
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: A0A6H5JWT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT9_9PHAE) HSP 1 Score: 104 bits (260), Expect = 2.720e-23 Identity = 55/126 (43.65%), Postives = 78/126 (61.90%), Query Frame = 1
Query: 10 RWEVVCSGC---NKCTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTGPYCSVCTNHYVKGSGFTCTECSE---NVWGIAAAV 369
R++ VC C ++C SC+V+ PTCS +D+T S+ +L TL++ GYWRA+N S +LACYN +AC GG TG ++ C GY GPYC+VC + Y TCT+CS N + +AAA+
Sbjct: 648 RYDTVCFDCPERSECYSCSVQEAAGRPTCSVALDNTVSEEA-GVSLETLSMSRGYWRASNSSLIILACYNPEACLGGQTGVDNSCDNGYQGPYCAVCESGYASSLAHTCTQCSSSRRNGFVVAAAI 772
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE) HSP 1 Score: 101 bits (252), Expect = 3.280e-22 Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = 1
Query: 13 WEVVCSGCN-KCTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTGPYCSVCTNHYVKGSGFTCTECSENV-WGIAAAVIAIIFAIMIAFDVIKYIISADMG 438
+EV+CSGC C C V L +P C+ ++H S GG + TL L+ID+GYWRAT S ++LACY+ +AC GG+T + + GY GP VC++ Y GF C +C EN+ GI V+ + A+++ Y+ S + G
Sbjct: 851 FEVMCSGCEVTCKGC-VNDGLLVPACTEVMEHATSDGG-NITLEALSIDSGYWRATESSEDILACYHPEACLGGVTATSGYRLEGYEGPCACVCSDGYSGQLGFECRKCPENIKGGITILVVLAVGALIVLAATYSYVTSGETG 992 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15224.3450.1 >prot_H-elongata_contig15224.3450.1 ID=prot_H-elongata_contig15224.3450.1|Name=mRNA_H-elongata_contig15224.3450.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp VGSRWEVVCSGCNKCTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAback to top mRNA from alignment at H-elongata_contig15224:728..1514+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15224.3450.1 ID=mRNA_H-elongata_contig15224.3450.1|Name=mRNA_H-elongata_contig15224.3450.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=787bp|location=Sequence derived from alignment at H-elongata_contig15224:728..1514+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15224:728..1514+ >mRNA_H-elongata_contig15224.3450.1 ID=mRNA_H-elongata_contig15224.3450.1|Name=mRNA_H-elongata_contig15224.3450.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig15224:728..1514+ (Himanthalia elongata Himel1 dioecious)back to top |