mRNA_H-elongata_contig15224.3450.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15224.3450.1
Unique NamemRNA_H-elongata_contig15224.3450.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 4.160e-33
Identity = 68/147 (46.26%), Postives = 92/147 (62.59%), Query Frame = 1
Query:    4 GSRWEVVCSGC---NKCTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTGPYCSVCTNHYVKGSGFTCTECSENVWGIAAAVIAIIFAIMIAFDVIKYIISADM 435
            G R++ VC GC   N     +VE    +P C  ++DHT+S+GG  TT+ TL + +GYWRATN S NVLACYN+DAC GG+T    FC  GY GPYCSVC+  Y     FTCTEC ++  GIA  V+  +F +  A  +  +++S +M
Sbjct: 1270 GDRYQTVCDGCPVNNSDWIVSVENGDRVPICVVQLDHTRSEGG-DTTIETLELSSGYWRATNDSANVLACYNEDACVGGMTNDPAFCQRGYEGPYCSVCSEGYSMSLAFTCTECVDDHGGIAIMVVVGVFVLGAAIALCMHLVSGEM 1415          
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 5.990e-29
Identity = 61/139 (43.88%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    4 GSRWEVVCSGCNKCTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTGPYCSVCTNHYVKGSGFTCTECSENVWGIAAAVIAIIFAIMIAFDVIKYI 420
            G   +  CSGC       V+  + +P CS  I H++S GG   TL TL+ID GYWRATN ST VLACYN DAC GG+TG+ ++C  GY GPYC++C++ Y    GFTC++C     GI  A    +  +     V+ Y+
Sbjct:  516 GDALDEACSGCQTTCDGCVQPPV-VPLCSDVIPHSRSDGGL-VTLETLSIDPGYWRATNSSTEVLACYNVDACVGGITGATEYCVEGYEGPYCAICSDDYSAQLGFTCSKCPNRAGGILLATALAVIGLFTVVAVVSYV 652          
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.150e-28
Identity = 61/144 (42.36%), Postives = 88/144 (61.11%), Query Frame = 1
Query:   13 WEVVCSGCN-KCTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTGPYCSVCTNHYVKGSGFTCTECSE-NVWGIAAAVIAIIFAIMIAFDVIKYIISADMG 438
            +EV+CSGC   C  C  +  L +P C+  ++H  S GG + TL  L+ID+GYWRAT  S +VLACY+ +AC GG+T +  +C  GY GPYCSVC+N Y +  GF C++C E N  GI   V+  +   ++   +  Y+ S + G
Sbjct: 1121 FEVMCSGCEVTCEGCVFDEGLLVPACTEVMEHATSDGG-NITLEALSIDSGYWRATESSEDVLACYHAEACLGGVTATSGYCLEGYEGPYCSVCSNGYSEQLGFVCSKCPEKNTGGIVILVVLAVGTTIVLAAIYSYVTSGEDG 1263          
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 6.150e-27
Identity = 60/140 (42.86%), Postives = 81/140 (57.86%), Query Frame = 1
Query:    4 GSRWEVVCSGCNK-CTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTGPYCSVCTNHYVKGSGFTCTECSENVWGIAAAVIAIIFAIMIAFDVIKYI 420
            G   +  CSGC   C  C   +  ++P CS  I  ++S GG   TL TL ID GYW ATN ST VLACYN DAC GG+TG+ ++C  GY GPYC++C++ Y    GFTC++C +   GI  A    +  +     V+ Y+
Sbjct:  523 GDPLDEACSGCQATCDGCA--QPPAVPLCSDVIPDSRSDGGL-VTLETLLIDPGYWMATNSSTEVLACYNVDACVGGITGATEYCVEGYEGPYCAICSDDYSVQLGFTCSKCPDRAGGILLATALAVIGLFTVAAVVSYV 659          
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: D7FRV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV1_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 2.170e-26
Identity = 59/144 (40.97%), Postives = 87/144 (60.42%), Query Frame = 1
Query:    4 GSRWEVVCSGCNKCTS-CTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTGPYCSVCTNHYVKGSGFTCTECSENVWGIAAAVIAIIFAIMIAFDVIKYIISAD 432
            G R+E VC GC       T+  E  +PTC+  +++T+S G  +T++  + ID GYWRAT  +T VLACYN DAC GG+TG   +C  GY GPYC++CT +Y +   F CT+CS    G+A  VI +    +    ++ Y++S +
Sbjct:  541 GGRYEAVCDGCPAADDGITMGVENLVPTCTETLENTRSDGA-NTSIEDIRIDPGYWRATTTTTTVLACYNADACLGGITGEAGYCREGYYGPYCAICTENYGRTMAFECTKCSSGE-GVAVGVIFVSALAVGGAALVAYLVSNE 682          
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: A0A6H5JMC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMC1_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.190e-26
Identity = 59/153 (38.56%), Postives = 87/153 (56.86%), Query Frame = 1
Query:    4 GSRWEVVCSGCNKCTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTG----------PYCSVCTNHYVKGSGFTCTECSENVWGIAAAVIAIIFAIMIAFDVIKYIISAD 432
            G R+  VCSGC +C  C V     +PTC+   DH +S G    T+ TL+ID GYWRAT  S N+LAC+N DAC GG TG+ D+C  GY G          P C+VC++ + +   FTC+ CS+       A++A+   +++    + Y++S +
Sbjct:  662 GDRYSNVCSGCEECNDCDVADNSEVPTCTITPDHAQSTGS---TVETLSIDRGYWRATPSSRNILACHNADACLGGETGAADYCAEGYEGALKSVSCTREPDCAVCSDGFAESLSFTCSNCSDGK-ATVVALVALPIMVILGLIFLVYMVSKE 810          
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 2.200e-26
Identity = 60/146 (41.10%), Postives = 81/146 (55.48%), Query Frame = 1
Query:    4 GSRWEVVCSGCNK-CTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTGPYCSVCTNHYVKGSGFTCTECSENVWGIAAAVIAIIFAIMIAFDVIKYIISADMG 438
            G+ +E  C GC   C  C  E  +  PTC+  ++H  S GG + TL  L ++ GYWRA+  S  V ACYN DAC GG+TG   +C  GY GPYC+VC++ Y     F CT CS     IA A +  +  + +AF V  Y +S  +G
Sbjct:  754 GNPYEAACGGCETACDGCFFEPPVP-PTCTDVMEHITSAGG-TVTLEDLPVERGYWRASPSSEEVFACYNSDACLGGVTGRAGYCLKGYEGPYCAVCSDGYTTELAFACTRCSGGAGRIALAAVLAVVVLCVAFAVASYAMSGRVG 897          
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.070e-23
Identity = 61/147 (41.50%), Postives = 81/147 (55.10%), Query Frame = 1
Query:    7 SRWEVVCSGC---NKCTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTGPYCSVCTNHYVKGSGFTCTECS--ENVWGIAAAVIAIIFAIMIAFDVIKYIISAD 432
            +R+  VC  C   +      + R    P C++ ++H+ S      TL TL+ID GYWRATN S  +LACYN DAC GG TGSE FC  GY GPYC+VC   +       CT CS       +AA VIA I A++    V +Y++S +
Sbjct:  499 ARFGTVCFDCPPWDDSAGNDITRGTVTPECAAPLEHS-SADAVGATLETLSIDKGYWRATNESDRILACYNADACSGGQTGSESFCASGYMGPYCAVCEPRHSSSLAHNCTRCSGSRRQGLLAATVIAAIAAVLAIAAVSRYLLSTE 644          
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: A0A6H5JWT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT9_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.720e-23
Identity = 55/126 (43.65%), Postives = 78/126 (61.90%), Query Frame = 1
Query:   10 RWEVVCSGC---NKCTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTGPYCSVCTNHYVKGSGFTCTECSE---NVWGIAAAV 369
            R++ VC  C   ++C SC+V+     PTCS  +D+T S+     +L TL++  GYWRA+N S  +LACYN +AC GG TG ++ C  GY GPYC+VC + Y      TCT+CS    N + +AAA+
Sbjct:  648 RYDTVCFDCPERSECYSCSVQEAAGRPTCSVALDNTVSEEA-GVSLETLSMSRGYWRASNSSLIILACYNPEACLGGQTGVDNSCDNGYQGPYCAVCESGYASSLAHTCTQCSSSRRNGFVVAAAI 772          
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 3.280e-22
Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = 1
Query:   13 WEVVCSGCN-KCTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTGPYCSVCTNHYVKGSGFTCTECSENV-WGIAAAVIAIIFAIMIAFDVIKYIISADMG 438
            +EV+CSGC   C  C V   L +P C+  ++H  S GG + TL  L+ID+GYWRAT  S ++LACY+ +AC GG+T +  +   GY GP   VC++ Y    GF C +C EN+  GI   V+  + A+++      Y+ S + G
Sbjct:  851 FEVMCSGCEVTCKGC-VNDGLLVPACTEVMEHATSDGG-NITLEALSIDSGYWRATESSEDILACYHPEACLGGVTATSGYRLEGYEGPCACVCSDGYSGQLGFECRKCPENIKGGITILVVLAVGALIVLAATYSYVTSGETG 992          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15224.3450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JY65_9PHAE4.160e-3346.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHH1_ECTSI5.990e-2943.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTI5_ECTSI1.150e-2842.36Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5KR67_9PHAE6.150e-2742.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRV1_ECTSI2.170e-2640.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMC1_9PHAE2.190e-2638.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G301_ECTSI2.200e-2641.10Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5KX12_9PHAE1.070e-2341.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWT9_9PHAE2.720e-2343.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1P8_9PHAE3.280e-2239.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15224contigH-elongata_contig15224:728..1514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue2.7e-28
Seed eggNOG ortholog2880.D8LHQ8
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size441
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929900.0135748-CDS-H-elongata_contig15224:727..10041622929900.0135748-CDS-H-elongata_contig15224:727..1004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15224 728..1004 +
1691679200.5588372-CDS-H-elongata_contig15224:727..10041691679200.5588372-CDS-H-elongata_contig15224:727..1004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15224 728..1004 +
1622929900.0325603-CDS-H-elongata_contig15224:1351..15121622929900.0325603-CDS-H-elongata_contig15224:1351..1512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15224 1352..1512 +
1691679200.5694933-CDS-H-elongata_contig15224:1351..15121691679200.5694933-CDS-H-elongata_contig15224:1351..1512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15224 1352..1512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15224.3450.1prot_H-elongata_contig15224.3450.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15224 728..1512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15224.3450.1

>prot_H-elongata_contig15224.3450.1 ID=prot_H-elongata_contig15224.3450.1|Name=mRNA_H-elongata_contig15224.3450.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
VGSRWEVVCSGCNKCTSCTVERELSIPTCSSEIDHTKSKGGYSTTLMTLA
IDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCGVGYTGPYCSVCTNH
YVKGSGFTCTECSENVWGIAAAVIAIIFAIMIAFDVIKYIISADMG
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mRNA from alignment at H-elongata_contig15224:728..1514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15224.3450.1 ID=mRNA_H-elongata_contig15224.3450.1|Name=mRNA_H-elongata_contig15224.3450.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=787bp|location=Sequence derived from alignment at H-elongata_contig15224:728..1514+ (Himanthalia elongata Himel1 dioecious)
GTGGGGAGCAGGTGGGAAGTCGTCTGCTCCGGTTGCAATAAATGCACCAG TTGTACGGTCGAAAGGGAGCTGAGTATTCCCACATGCTCATCGGAAATAG ATCACACGAAAAGCAAAGGCGGGTACAGCACAACTCTTATGACGCTGGCG ATCGATGCTGGGTATTGGCGGGCCACCAACTACAGCACCAACGTTTTAGC CTGCTACAACGATGATGCGTGCAAAGGAGGATTGACAGGCTCTGAAGATT TCTGCGGTGTGGGCTACACAGGGCCATGTGAGATACCCAAAACTATCGTT TCACGTCATATGTCTGGACTGCCAATTCCCATAGCGACATGTTCACATTT CTGCCGGCCTGGTTTTGTATAGTTTGAGACGTTAAACTCTATACGGAGCG TTAGCCGCCAGTTCGGGTTTGAAGTAATCGACGATGCTCTCAATTATTTT TAGTTCTACGCCAAGAATATACAAATCTCATGACTGCTGCTCAACAGAAC CTTTGGCAGGGAGGCCGTCGAAGCTGGTTATCCGCCGTCTCCTCTTTGGA ATAAAATATTATATACTTATCAATATATTTAATTGACCTTTCCCGTGGCC ACATCGTCGCACATTTTTTTCTAGACTGTTCAGTCTGCACTAATCACTAT GTGAAGGGTTCAGGGTTTACCTGCACAGAGTGCTCAGAAAACGTTTGGGG CATTGCGGCTGCCGTGATCGCGATCATCTTCGCTATCATGATTGCGTTTG ATGTCATCAAGTACATCATTTCGGCCGATATGGGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig15224:728..1514+

>mRNA_H-elongata_contig15224.3450.1 ID=mRNA_H-elongata_contig15224.3450.1|Name=mRNA_H-elongata_contig15224.3450.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig15224:728..1514+ (Himanthalia elongata Himel1 dioecious)
GTGGGGAGCAGGTGGGAAGTCGTCTGCTCCGGTTGCAATAAATGCACCAG
TTGTACGGTCGAAAGGGAGCTGAGTATTCCCACATGCTCATCGGAAATAG
ATCACACGAAAAGCAAAGGCGGGTACAGCACAACTCTTATGACGCTGGCG
ATCGATGCTGGGTATTGGCGGGCCACCAACTACAGCACCAACGTTTTAGC
CTGCTACAACGATGATGCGTGCAAAGGAGGATTGACAGGCTCTGAAGATT
TCTGCGGTGTGGGCTACACAGGGCCATGTGGGGAGCAGGTGGGAAGTCGT
CTGCTCCGGTTGCAATAAATGCACCAGTTGTACGGTCGAAAGGGAGCTGA
GTATTCCCACATGCTCATCGGAAATAGATCACACGAAAAGCAAAGGCGGG
TACAGCACAACTCTTATGACGCTGGCGATCGATGCTGGGTATTGGCGGGC
CACCAACTACAGCACCAACGTTTTAGCCTGCTACAACGATGATGCGTGCA
AAGGAGGATTGACAGGCTCTGAAGATTTCTGCGGTGTGGGCTACACAGGG
CCATACTGTTCAGTCTGCACTAATCACTATGTGAAGGGTTCAGGGTTTAC
CTGCACAGAGTGCTCAGAAAACGTTTGGGGCATTGCGGCTGCCGTGATCG
CGATCATCTTCGCTATCATGATTGCGTTTGATGTCATCAAGTACATCATT
TCGGCCGATATGGGGACTGTTCAGTCTGCACTAATCACTATGTGAAGGGT
TCAGGGTTTACCTGCACAGAGTGCTCAGAAAACGTTTGGGGCATTGCGGC
TGCCGTGATCGCGATCATCTTCGCTATCATGATTGCGTTTGATGTCATCA
AGTACATCATTTCGGCCGATATGGGG
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