mRNA_H-elongata_contig15218.3448.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: D8LM38_ECTSI (Excision repair helicase ercc-6-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM38_ECTSI) HSP 1 Score: 196 bits (498), Expect = 1.170e-60 Identity = 96/162 (59.26%), Postives = 114/162 (70.37%), Query Frame = 1
Query: 1 QVTSLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVVLAHDMSTAKRKRVICQAMEGGDMDGGAVVVTSYGMVSARREHFAPL------------GKDHKWDYVILDEGHKIKNRSTRTPIQNNMKELHTVVDWVTSGRLFGPYDHFKK 450
QVT LAGLF T QA ALV+APKSVMRGWE EL WLV+A+CP +VVV+A +M R+R I A EGG GAV++T+YGMVS+ + FAP + H WDYVILDEGHKIKN ST+TP+QNN+KELHTVVDW T G+L GPY +FKK
Sbjct: 79 QVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLVRAACPKAEVVVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIEREEPRKHVWDYVILDEGHKIKNASTKTPVQNNLKELHTVVDWATFGKLLGPYKYFKK 240
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: A0A6H5KD23_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD23_9PHAE) HSP 1 Score: 137 bits (344), Expect = 1.170e-34 Identity = 74/135 (54.81%), Postives = 87/135 (64.44%), Query Frame = 1
Query: 1 QVTSLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQV----VVLAHDMSTAKRKRVICQAMEGGDMDGGAVVVTSYGMVSARREHFAPL------------GKDHKWDYVILDEGHKIKNRSTR 357
QVT LAGLF T QA ALV+APKSVMRGWE EL WLVKA+CP +V VV+A +M R+R I A EGG GAV++T+YGMVS+ + FAP + H WDYVILDEGHKIKN ST+
Sbjct: 545 QVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLVKAACPKAEVRQEVVVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIERGEPRQHVWDYVILDEGHKIKNASTK 679
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: A0A1Z5KQS8_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQS8_FISSO) HSP 1 Score: 111 bits (278), Expect = 1.270e-25 Identity = 67/166 (40.36%), Postives = 89/166 (53.61%), Query Frame = 1
Query: 16 LAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVVLAHDMSTAKRKRVICQAMEG--GDMDGGAVVVTSYGMVSARREHFAPLGKDHKWDYVILDEGHKIKNRSTRT--------------------PIQNNMKELHTVVDWVTSGRLFGPYDHFK 447
L GL + ALVVAPKSV+R WE E + L+ A P V V++ D S +RKR++ A+ +V+TSYGMV + F KD WDYV+LDEGH IKNR T+T PI NN++EL T+ DW+++GRL G + FK
Sbjct: 228 LGGLMNAGTICNALVVAPKSVLRSWEREASKVLL-ACVPIAMVQVMSADHSPLQRKRILADALAARRSKSQRPQLVITSYGMVEKCTDLFLGGAKD-VWDYVVLDEGHTIKNRRTKTHACCQSICKNKTKRIMLTGTPIMNNVEELWTIFDWISAGRLLGDFSTFK 391
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: A0A7S2E6H2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E6H2_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.750e-25 Identity = 62/172 (36.05%), Postives = 94/172 (54.65%), Query Frame = 1
Query: 1 QVTSLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVVLAHDMSTAKRKRVICQAMEGGDMDGGAVVVTSYGMVSARREHFAPLGKDHK--WDYVILDEGHKIKNRSTR---------------------TPIQNNMKELHTVVDWVTSGRLFGPYDHFK 447
Q + L GL ++ AL++ P S+MR WE E ++ L + P + + VLA D+ +R ++ A+ +V+T+YG+VS+ P+ + + WDYV+LDEGHKIKN +T+ TPIQNN+KEL ++VDWVT+GRLFG F+
Sbjct: 407 QTLTYLGGLMKSKTIRNALIICPVSLMRTWEREARDILERCCVPRITISVLASDVRKPRRHDILVDALTTS-YKYPQLVITTYGLVSSNPLDLIPVENEQERLWDYVVLDEGHKIKNPTTKVTKGCHRICRNEHTRRLLLTGTPIQNNLKELWSLVDWVTNGRLFGKLTTFR 577
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: A0A1E7FBA8_9STRA (SNF2_N-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBA8_9STRA) HSP 1 Score: 101 bits (251), Expect = 5.130e-22 Identity = 59/168 (35.12%), Postives = 87/168 (51.79%), Query Frame = 1
Query: 10 SLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVVLAHDMSTAKRKRVICQAMEGGDMDGGAVVVTSYGMVSARREHFAP-LGKDHKWDYVILDEGHKIKNRST---------------------RTPIQNNMKELHTVVDWVTSGRLFGPYDHFK 447
SLL GL + L+VAP SV+R W E + L + + V+A D+S KRK+ + QA+E +++T++G+VS +HF + WDYV+LDE HKIKN +T TPI NN+ ELH++ + TSG++ GPY F+
Sbjct: 51 SLLGGLMKAKTIQKVLIVAPVSVLRNWANEAIKILRNCINLKINIEVIASDVSIQKRKKKLHQALEAQIPQ---LIITTFGLVSNNPDHFTQRVAGSGVWDYVVLDEAHKIKNPNTIISTNMKVIAHSARTRRLILTGTPIMNNLNELHSLFTFATSGKILGPYKEFQ 215
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: UPI000B459081 (DNA excision repair protein ERCC-6-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B459081) HSP 1 Score: 100 bits (249), Expect = 1.030e-21 Identity = 60/167 (35.93%), Postives = 85/167 (50.90%), Query Frame = 1
Query: 1 QVTSLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVVLAHDMSTAKRKRVICQAMEGGDMDGGAVVVTSYGMVSARREHFAPL-GKDHKWDYVILDEGHKIKNRS-----------------TRTPIQNNMKELHTVVDWVTSGRLFGPYDHFK 447
QV + L+GLF + L+V P S++ WE E +W P ++V L H S +++R +C+ G V +TSYG+V E + G+D +WDY+ILDEGHKIKN + T TP+QNN+KEL + D+V G L G FK
Sbjct: 176 QVIAFLSGLFDMNKVHAVLIVMPVSLITNWEKEFNKW-----APGIRVT-LFHGSSKREKERALCKVQRRG-----GVCLTSYGLVVTSSEQLSQKEGRDFEWDYMILDEGHKIKNPTKTTKGVHAIGAKNRIILTGTPVQNNLKELWALFDFVHKGTLLGTARTFK 331
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: A0A6J8B126_MYTCO (ERCC6L n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8B126_MYTCO) HSP 1 Score: 97.8 bits (242), Expect = 9.150e-21 Identity = 61/167 (36.53%), Postives = 84/167 (50.30%), Query Frame = 1
Query: 1 QVTSLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVVLAHDMSTAKRKRVICQAMEGGDMDGGAVVVTSYGMVSARREHFAPL-GKDHKWDYVILDEGHKIKNRS-----------------TRTPIQNNMKELHTVVDWVTSGRLFGPYDHFK 447
QV S L+GLF ++ L+V P S++ WE E Q+W P ++V H S +++R +C+ G V++TSYG+V E G++ WDYV LDEGHKIKN + T TPIQNN+KEL + D+V G L G FK
Sbjct: 561 QVISFLSGLFDMDKVKSVLIVMPVSLIVNWEKEFQKW-----APGIRVEAY-HGSSKKEKERALCKVQRRG-----GVLLTSYGLVVTSSEVIGKQDGREFVWDYVALDEGHKIKNPTKTTKGVHAIPARNRIILTGTPIQNNLKELWALFDFVHQGSLLGTARTFK 716
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: A0A8B6BYE1_MYTGA (DNA excision repair protein ERCC-6-like n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BYE1_MYTGA) HSP 1 Score: 97.8 bits (242), Expect = 9.160e-21 Identity = 61/167 (36.53%), Postives = 84/167 (50.30%), Query Frame = 1
Query: 1 QVTSLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVVLAHDMSTAKRKRVICQAMEGGDMDGGAVVVTSYGMVSARREHFAPL-GKDHKWDYVILDEGHKIKNRS-----------------TRTPIQNNMKELHTVVDWVTSGRLFGPYDHFK 447
QV S L+GLF ++ L+V P S++ WE E Q+W P ++V H S +++R +C+ G V++TSYG+V E G++ WDYV LDEGHKIKN + T TPIQNN+KEL + D+V G L G FK
Sbjct: 575 QVISFLSGLFDMDKVKSVLIVMPVSLIVNWEKEFQKW-----APGIRVEAY-HGSSKKEKERALCKVQRRG-----GVLLTSYGLVVTSSEVIGKQDGREFVWDYVALDEGHKIKNPTKTTKGVHAIPARNRIILTGTPIQNNLKELWALFDFVHQGALLGTARTFK 730
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: A0A7M7J336_VARDE (Uncharacterized protein n=4 Tax=Varroa TaxID=62624 RepID=A0A7M7J336_VARDE) HSP 1 Score: 97.4 bits (241), Expect = 1.210e-20 Identity = 58/168 (34.52%), Postives = 87/168 (51.79%), Query Frame = 1
Query: 1 QVTSLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVVLAHDMSTAKRKRVICQAMEGGDMDGGAVVVTSYGMVSARREHFAPL-GKDHKWDYVILDEGHKIKNRS-----------------TRTPIQNNMKELHTVVDWVTSGRLFGPYDHFKK 450
QV S LAGL+ E+ + L+V P S++ W E ++W A + V H T K K V+ + + M+ G V++T+YGMV+ R E G++ WDY+ILDEGH+IKN + T T +QNN++EL ++ + G LFG FK+
Sbjct: 121 QVISFLAGLYDMEKISSVLLVMPVSLIGNWMTEFEKW-------APGIKVFDHHAGTNKEKEVVLRKV----MNRGGVILTTYGMVTTRHEELCQKNGRNFVWDYIILDEGHRIKNPTKTQKAVFGLLAKHRLVLTGTAVQNNLRELWSLFHFTHQGMLFGNLAGFKQ 277
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Match: A0A7S1NDF6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NDF6_9EUGL) HSP 1 Score: 96.7 bits (239), Expect = 2.230e-20 Identity = 59/167 (35.33%), Postives = 89/167 (53.29%), Query Frame = 1
Query: 1 QVTSLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVVLAHDMSTAKRKRVICQAMEGGDMDGGAVVVTSYGMVSARREHFAPLGKDHKWDYVILDEGHKIKNRSTR------------------TPIQNNMKELHTVVDWVTSGRLFGPYDHFK 447
Q+ S L G+F ++ AL+V P S++ W AE + W K +V H+++ +RKR++ Q + GG V VTSYG++++ E F G + WDY+ILDEGHK+KN S + TPIQNN+ EL ++ D++ G+L G FK
Sbjct: 399 QIISFLNGMFHAQRIKYALIVMPVSLLENWCAEFERWAPKL------LVERLHEVTVERRKRLLRQL----HLYGG-VCVTSYGLITSNVEVFEDSGIN--WDYIILDEGHKVKNPSIKLSKNVRKIEVKHRVILSGTPIQNNLTELWSLFDFICMGKLLGSQAEFK 552 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15218.3448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15218.3448.1 >prot_H-elongata_contig15218.3448.1 ID=prot_H-elongata_contig15218.3448.1|Name=mRNA_H-elongata_contig15218.3448.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp QVTSLLAGLFSTEQATCALVVAPKSVMRGWEAELQEWLVKASCPAVQVVVback to top mRNA from alignment at H-elongata_contig15218:4606..7589- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15218.3448.1 ID=mRNA_H-elongata_contig15218.3448.1|Name=mRNA_H-elongata_contig15218.3448.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2984bp|location=Sequence derived from alignment at H-elongata_contig15218:4606..7589- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15218:4606..7589- >mRNA_H-elongata_contig15218.3448.1 ID=mRNA_H-elongata_contig15218.3448.1|Name=mRNA_H-elongata_contig15218.3448.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig15218:4606..7589- (Himanthalia elongata Himel1 dioecious)back to top |