mRNA_H-elongata_contig15176.3425.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15176.3425.1
Unique NamemRNA_H-elongata_contig15176.3425.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15176.3425.1 vs. uniprot
Match: A0A2W1G367_9PLEO (Uncharacterized protein (Fragment) n=1 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=A0A2W1G367_9PLEO)

HSP 1 Score: 52.8 bits (125), Expect = 3.690e-5
Identity = 30/88 (34.09%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:  256 VSESWIFDSGSSGHVTPNADQLRSFRTC--NRFLRVANGTQLPIEGYGDLTVDFRSGQGVVRVELINVAYVPRLSYHLLSLPTFAKQG 513
            +S S+IFDSGS+ H+T N D++ ++R      F+   N +Q+ I+GYG + +     Q V ++ L +VA  P +  +++S     KQG
Sbjct:   58 LSNSFIFDSGSTCHITNNPDRIHNYRPPIHGDFIWAGN-SQIWIKGYGSIVIQLEHKQRVEKLVLHDVAICPDILCNIVSFRVLRKQG 144
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BLAST of mRNA_H-elongata_contig15176.3425.1 vs. uniprot
Match: A0A834RH90_9PLEO (Integrase catalytic domain-containing protein n=1 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=A0A834RH90_9PLEO)

HSP 1 Score: 52.8 bits (125), Expect = 5.580e-5
Identity = 30/88 (34.09%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:  256 VSESWIFDSGSSGHVTPNADQLRSFRTC--NRFLRVANGTQLPIEGYGDLTVDFRSGQGVVRVELINVAYVPRLSYHLLSLPTFAKQG 513
            +S S+IFDSGS+ H+T N D++ ++R      F+   N +Q+ I+GYG + +     Q V ++ L +VA  P +  +++S     KQG
Sbjct:   16 LSNSFIFDSGSTCHITNNPDRIHNYRPPIHGDFIWAGN-SQIWIKGYGSIVIQLEHKQRVEKLVLHDVAICPDILCNIVSFRVLRKQG 102
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BLAST of mRNA_H-elongata_contig15176.3425.1 vs. uniprot
Match: A0A2W1FNW1_9PLEO (Uncharacterized protein (Fragment) n=1 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=A0A2W1FNW1_9PLEO)

HSP 1 Score: 52.8 bits (125), Expect = 5.990e-5
Identity = 30/88 (34.09%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:  256 VSESWIFDSGSSGHVTPNADQLRSFRTC--NRFLRVANGTQLPIEGYGDLTVDFRSGQGVVRVELINVAYVPRLSYHLLSLPTFAKQG 513
            +S S+IFDSGS+ H+T N D++ ++R      F+   N +Q+ I+GYG + +     Q V ++ L +VA  P +  +++S     KQG
Sbjct:  217 LSNSFIFDSGSTCHITNNPDRIHNYRPPIHGDFIWAGN-SQIWIKGYGSIVIQLEHKQRVEKLVLHDVAICPDILCNIVSFRVLRKQG 303
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BLAST of mRNA_H-elongata_contig15176.3425.1 vs. uniprot
Match: A0A316ZVW4_9PLEO (Uncharacterized protein n=2 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=A0A316ZVW4_9PLEO)

HSP 1 Score: 52.8 bits (125), Expect = 6.640e-5
Identity = 30/88 (34.09%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:  256 VSESWIFDSGSSGHVTPNADQLRSFRTC--NRFLRVANGTQLPIEGYGDLTVDFRSGQGVVRVELINVAYVPRLSYHLLSLPTFAKQG 513
            +S S+IFDSGS+ H+T N D++ ++R      F+   N +Q+ I+GYG + +     Q V ++ L +VA  P +  +++S     KQG
Sbjct:  430 LSNSFIFDSGSTCHITNNPDRIHNYRPPIHGDFIWAGN-SQIWIKGYGSIVIQLEHKQRVEKLVLHDVAICPDILCNIVSFRVLRKQG 516
[Close]
BLAST of mRNA_H-elongata_contig15176.3425.1 vs. uniprot
Match: A0A834RNU4_9PLEO (Integrase catalytic domain-containing protein n=1 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=A0A834RNU4_9PLEO)

HSP 1 Score: 52.8 bits (125), Expect = 6.800e-5
Identity = 30/88 (34.09%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:  256 VSESWIFDSGSSGHVTPNADQLRSFRTC--NRFLRVANGTQLPIEGYGDLTVDFRSGQGVVRVELINVAYVPRLSYHLLSLPTFAKQG 513
            +S S+IFDSGS+ H+T N D++ ++R      F+   N +Q+ I+GYG + +     Q V ++ L +VA  P +  +++S     KQG
Sbjct:   16 LSNSFIFDSGSTCHITNNPDRIHNYRPPIHGDFIWAGN-SQIWIKGYGSIVIQLEHKQRVEKLVLHDVAICPDILCNIVSFRVLRKQG 102
[Close]
BLAST of mRNA_H-elongata_contig15176.3425.1 vs. uniprot
Match: A0A834VT98_9PLEO (Integrase catalytic domain-containing protein n=8 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=A0A834VT98_9PLEO)

HSP 1 Score: 52.8 bits (125), Expect = 7.410e-5
Identity = 30/88 (34.09%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:  256 VSESWIFDSGSSGHVTPNADQLRSFRTC--NRFLRVANGTQLPIEGYGDLTVDFRSGQGVVRVELINVAYVPRLSYHLLSLPTFAKQG 513
            +S S+IFDSGS+ H+T N D++ ++R      F+   N +Q+ I+GYG + +     Q V ++ L +VA  P +  +++S     KQG
Sbjct:   16 LSNSFIFDSGSTCHITNNPDRIHNYRPPIHGDFIWAGN-SQIWIKGYGSIVIQLEHKQRVEKLVLHDVAICPDILCNIVSFRVLRKQG 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15176.3425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2W1G367_9PLEO3.690e-534.09Uncharacterized protein (Fragment) n=1 Tax=Pyrenop... [more]
A0A834RH90_9PLEO5.580e-534.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A2W1FNW1_9PLEO5.990e-534.09Uncharacterized protein (Fragment) n=1 Tax=Pyrenop... [more]
A0A316ZVW4_9PLEO6.640e-534.09Uncharacterized protein n=2 Tax=Pyrenophora tritic... [more]
A0A834RNU4_9PLEO6.800e-534.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A834VT98_9PLEO7.410e-534.09Integrase catalytic domain-containing protein n=8 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15176contigH-elongata_contig15176:368..1129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size522
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929897.5775793-CDS-H-elongata_contig15176:367..6431622929897.5775793-CDS-H-elongata_contig15176:367..643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15176 368..643 -
1691679199.6984546-CDS-H-elongata_contig15176:367..6431691679199.6984546-CDS-H-elongata_contig15176:367..643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15176 368..643 -
1622929897.5880282-CDS-H-elongata_contig15176:883..11291622929897.5880282-CDS-H-elongata_contig15176:883..1129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15176 884..1129 -
1691679199.712241-CDS-H-elongata_contig15176:883..11291691679199.712241-CDS-H-elongata_contig15176:883..1129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15176 884..1129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15176.3425.1prot_H-elongata_contig15176.3425.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15176 368..1129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15176.3425.1

>prot_H-elongata_contig15176.3425.1 ID=prot_H-elongata_contig15176.3425.1|Name=mRNA_H-elongata_contig15176.3425.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp
ASRGERSNASDKGSNKKSSGGGENSSGDSVGSEKPAAVKGPLCSACRHRG
HISSECTAEICKRCGGVGHSESSCSSSPDVKEAGGVSESWIFDSGSSGHV
TPNADQLRSFRTCNRFLRVANGTQLPIEGYGDLTVDFRSGQGVVRVELIN
VAYVPRLSYHLLSLPTFAKQGHFF
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mRNA from alignment at H-elongata_contig15176:368..1129-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15176.3425.1 ID=mRNA_H-elongata_contig15176.3425.1|Name=mRNA_H-elongata_contig15176.3425.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=762bp|location=Sequence derived from alignment at H-elongata_contig15176:368..1129- (Himanthalia elongata Himel1 dioecious)
GCTAGCAGAGGTGAACGCAGCAACGCGAGTGACAAGGGTAGCAACAAGAA
GTCGTCGGGCGGTGGCGAAAACTCTTCCGGTGATTCCGTTGGTTCAGAAA
AGCCGGCGGCGGTCAAAGGACCGTTGTGCTCTGCCTGCCGCCACCGTGGG
CACATTTCTTCCGAGTGCACGGCGGAGATATGCAAACGGTGCGGCGGAGT
CGGCCATAGCGAGAGCTCTTGCTCCTCGTCTCCAGACGTGAAGGAGGTTG
TATTGGCGATTGAGCTTGACGAGGCGATGGAGGTGCCGGAAATGGGGAAC
GAATTTATTGTGGCCGAGGCACTGCTGACGAGCAAGGTGGACTGCGATGA
GCGAGGGTTCGTGGTTACCGAGGTGGATGGCAGCATGATGACGGCCGGTA
TTTCTACTTCTGGGGCCCCTATGGCACAAGGCGAGTATGTTGGTTCGGGC
CGTCACATTGGTAGTGTAGGGGGCTTGGCGCTGCAGGCTGGGGGGGTGAG
CGAGAGTTGGATCTTCGACAGCGGCTCGTCTGGTCATGTGACACCCAACG
CTGATCAATTGAGAAGTTTCCGCACTTGCAACAGATTTCTGCGTGTAGCT
AATGGCACGCAACTCCCGATTGAGGGCTACGGCGATCTCACCGTTGACTT
CCGATCTGGCCAGGGCGTTGTGCGTGTAGAGCTGATAAACGTAGCCTACG
TACCACGCCTTAGCTACCACCTTCTCTCGCTCCCTACTTTTGCAAAGCAA
GGTCACTTCTTC
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Coding sequence (CDS) from alignment at H-elongata_contig15176:368..1129-

>mRNA_H-elongata_contig15176.3425.1 ID=mRNA_H-elongata_contig15176.3425.1|Name=mRNA_H-elongata_contig15176.3425.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig15176:368..1129- (Himanthalia elongata Himel1 dioecious)
GCTAGCAGAGGTGAACGCAGCAACGCGAGTGACAAGGGTAGCAACAAGAA
GTCGTCGGGCGGTGGCGAAAACTCTTCCGGTGATTCCGTTGGTTCAGAAA
AGCCGGCGGCGGTCAAAGGACCGTTGTGCTCTGCCTGCCGCCACCGTGGG
CACATTTCTTCCGAGTGCACGGCGGAGATATGCAAACGGTGCGGCGGAGT
CGGCCATAGCGAGAGCTCTTGCTCCTCGTCTCCAGACGTGAAGGAGGCTA
GCAGAGGTGAACGCAGCAACGCGAGTGACAAGGGTAGCAACAAGAAGTCG
TCGGGCGGTGGCGAAAACTCTTCCGGTGATTCCGTTGGTTCAGAAAAGCC
GGCGGCGGTCAAAGGACCGTTGTGCTCTGCCTGCCGCCACCGTGGGCACA
TTTCTTCCGAGTGCACGGCGGAGATATGCAAACGGTGCGGCGGAGTCGGC
CATAGCGAGAGCTCTTGCTCCTCGTCTCCAGACGTGAAGGAGGCTGGGGG
GGTGAGCGAGAGTTGGATCTTCGACAGCGGCTCGTCTGGTCATGTGACAC
CCAACGCTGATCAATTGAGAAGTTTCCGCACTTGCAACAGATTTCTGCGT
GTAGCTAATGGCACGCAACTCCCGATTGAGGGCTACGGCGATCTCACCGT
TGACTTCCGATCTGGCCAGGGCGTTGTGCGTGTAGAGCTGATAAACGTAG
CCTACGTACCACGCCTTAGCTACCACCTTCTCTCGCTCCCTACTTTTGCA
AAGCAAGGTCACTTCTTCGCTGGGGGGGTGAGCGAGAGTTGGATCTTCGA
CAGCGGCTCGTCTGGTCATGTGACACCCAACGCTGATCAATTGAGAAGTT
TCCGCACTTGCAACAGATTTCTGCGTGTAGCTAATGGCACGCAACTCCCG
ATTGAGGGCTACGGCGATCTCACCGTTGACTTCCGATCTGGCCAGGGCGT
TGTGCGTGTAGAGCTGATAAACGTAGCCTACGTACCACGCCTTAGCTACC
ACCTTCTCTCGCTCCCTACTTTTGCAAAGCAAGGTCACTTCTTC
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