mRNA_H-elongata_contig151709.3422.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig151709.3422.1 vs. uniprot
Match: A0A6H5JX23_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX23_9PHAE) HSP 1 Score: 133 bits (334), Expect = 1.100e-33 Identity = 77/121 (63.64%), Postives = 88/121 (72.73%), Query Frame = 1
Query: 1 VHVRLGGS--YSGLDQDDDSIDSMDCTGSYAVWAVTADRDAC----GVVRVACSEMAQTEVPRSAVQRVQCEEEALAALVKARCVLDNAEPALSLLANNSSGPESVEQWTLTQVRTLEKAL 345
VHVRLGG G D+ S+ S SYAVWAVTA RDA GV RV CSEMAQTEVP SA+QRVQCEEEALAALVKARC LD+ +PAL +L + + PES++ WTL QVRTLE+AL
Sbjct: 570 VHVRLGGKGDKGGTPGDESSVAS-----SYAVWAVTAGRDAGSNARGVARVGCSEMAQTEVPISAIQRVQCEEEALAALVKARCTLDDFDPALKILVGDEASPESIQPWTLQQVRTLEQAL 685
BLAST of mRNA_H-elongata_contig151709.3422.1 vs. uniprot
Match: D7G9E3_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E3_ECTSI) HSP 1 Score: 130 bits (327), Expect = 9.600e-33 Identity = 75/121 (61.98%), Postives = 87/121 (71.90%), Query Frame = 1
Query: 1 VHVRLGGS--YSGLDQDDDSIDSMDCTGSYAVWAVTADRDAC----GVVRVACSEMAQTEVPRSAVQRVQCEEEALAALVKARCVLDNAEPALSLLANNSSGPESVEQWTLTQVRTLEKAL 345
+HVRLGG G D S+ S SYAVWAVTA R+A GV RV CSEMAQTEVP SA+QRVQCEEEALAALVKARC LD+ +PAL +L + + PES++ WTL QVRTLE+AL
Sbjct: 368 IHVRLGGEGDKGGTPGDKSSVAS-----SYAVWAVTAGRNAGSNARGVARVGCSEMAQTEVPMSAIQRVQCEEEALAALVKARCTLDDFDPALKILVGDEASPESIQPWTLQQVRTLEQAL 483
BLAST of mRNA_H-elongata_contig151709.3422.1 vs. uniprot
Match: D8LCW0_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW0_ECTSI) HSP 1 Score: 124 bits (310), Expect = 1.880e-30 Identity = 75/119 (63.03%), Postives = 84/119 (70.59%), Query Frame = 1
Query: 1 VHVRLGGSYSGLDQDDDSIDSMDCTGSYAVWAVTADRDACGVVRVACSEMAQTEVPRSAVQRVQCEEEALAALVKARCVLDNAEPALSLLANNSSGPESVEQWTLTQVRTLEKALDDEF 357
VHVRLG S S D S+ SYAVWA+TA R + GV RVACSEMAQT VP SAVQRVQ EEEALAALVKARC LD+ PAL +L S+ ESV WTL+QVRTLE+ L+ EF
Sbjct: 419 VHVRLGDSGSAAKGDKGVTTSV--ASSYAVWAITAGRHSPGVTRVACSEMAQTNVPMSAVQRVQSEEEALAALVKARCTLDDFRPALKVLDQAST--ESVAPWTLSQVRTLEQVLEKEF 533
BLAST of mRNA_H-elongata_contig151709.3422.1 vs. uniprot
Match: A0A6H5K0T4_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T4_9PHAE) HSP 1 Score: 119 bits (298), Expect = 7.840e-29 Identity = 70/121 (57.85%), Postives = 83/121 (68.60%), Query Frame = 1
Query: 1 VHVRLGGSYSGLDQDDDSIDSMDCTGSYAVWAVTAD-RDACGVVRVACSEMAQTEVPRSAVQRVQCEEEALAALVKARCVLDNAEPALSLLANNSSGPESVEQWTLTQVRTLEKALDDEFD 360
+HVRLGG D SYAVWA+T A G VRVACSE+AQTE+P SA+QR CEEEAL ALVK CVLDN EPAL +LA++++ PESV+ W+L QVRTLE ALD +FD
Sbjct: 562 IHVRLGGKNE--DGXXXXXXXXXXXXSYAVWALTTGVSSASGDVRVACSEIAQTEIPASAIQR--CEEEALEALVKTNCVLDNFEPALKMLADSTTSPESVQPWSLDQVRTLEAALDKDFD 678
BLAST of mRNA_H-elongata_contig151709.3422.1 vs. uniprot
Match: A0A6H5KVI2_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI2_9PHAE) HSP 1 Score: 115 bits (289), Expect = 1.290e-27 Identity = 70/119 (58.82%), Postives = 81/119 (68.07%), Query Frame = 1
Query: 1 VHVRLGGSYSGLDQDDDSIDSMDCTGSYAVWAVTADRDACGVVRVACSEMAQTEVPRSAVQRVQCEEEALAALVKARCVLDNAEPALSLLANNSSGPESVEQWTLTQVRTLEKALDDEF 357
VHVRLG S D S+ SYAVWA+ A R + G VRVACSEMAQT VP SAVQRVQ EEEALAALVKARC LD+ PAL +L + + +SV W L+QVRTLE+ L+ EF
Sbjct: 574 VHVRLGDRGSAAKGDKGVTTSV--ANSYAVWAIMAGRHSAGAVRVACSEMAQTTVPISAVQRVQSEEEALAALVKARCTLDDFRPALKVL--DQASLDSVAPWALSQVRTLEQVLEKEF 688
BLAST of mRNA_H-elongata_contig151709.3422.1 vs. uniprot
Match: A0A6H5JLS8_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS8_9PHAE) HSP 1 Score: 109 bits (273), Expect = 1.850e-25 Identity = 62/120 (51.67%), Postives = 86/120 (71.67%), Query Frame = 1
Query: 1 VHVRLGGSYSGLDQDDDSIDSMDCTGSYAVWAVTADRDACGVVRVACSEMAQTEVPRSAVQRVQCEEEALAALVKARCVLDNAEPALSLLANNSSGPESVEQWTLTQVRTLEKALDDEFD 360
VHVRLG + S + + ++ + GSYAVWA+T + GV+RVACSE+AQT+VP A+QRVQ EE+AL ALVKARC LD+ +PAL + + + ESV+ W L+QVR L++AL++ FD
Sbjct: 576 VHVRLGDAGSKNNGNVEAA-TTSVAGSYAVWAITVGCHSAGVIRVACSEIAQTKVPIPAIQRVQSEEQALGALVKARCTLDDFKPALKVF--DQASMESVDPWKLSQVRNLKQALEEHFD 692
BLAST of mRNA_H-elongata_contig151709.3422.1 vs. uniprot
Match: D8LCW2_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW2_ECTSI) HSP 1 Score: 103 bits (258), Expect = 1.840e-23 Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 1
Query: 1 VHVRLGGSYSGLDQDDDSIDSMDCTGSYAVWAVTADRDACGVVRVACSEMAQTEVPRSAVQRVQCEEEALAALVKARCVLDNAEPALSLLANNSSGPESVEQWTLTQVR 327
VHVRLG S D ++ + SYAVWA+T R + GV+RVACSEMAQT+VP A+QRVQ EE+ALAALVKARC LD+ +PAL++ + + ESV+ W L+QVR
Sbjct: 499 VHVRLGDGGSEKTGDVEA-GTTSVASSYAVWAITVGRHSAGVIRVACSEMAQTKVPIPAIQRVQSEEQALAALVKARCTLDDFKPALNVF--DQASMESVDPWKLSQVR 604
BLAST of mRNA_H-elongata_contig151709.3422.1 vs. uniprot
Match: D7G9E4_ECTSI (BAH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E4_ECTSI) HSP 1 Score: 74.3 bits (181), Expect = 4.720e-13 Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1
Query: 193 CEEEALAALVKARCVLDNAEPALSLLANNSSGPESVEQWTLTQVRTLEKALDDEFD 360
CEE AL ALVK CVLDN EPAL +LA++++ PES++ W+L QVRTLE ALD +FD
Sbjct: 517 CEEAALEALVKTNCVLDNFEPALKMLADSTTSPESLQPWSLDQVRTLEAALDKDFD 572 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151709.3422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig151709.3422.1 >prot_H-elongata_contig151709.3422.1 ID=prot_H-elongata_contig151709.3422.1|Name=mRNA_H-elongata_contig151709.3422.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp VHVRLGGSYSGLDQDDDSIDSMDCTGSYAVWAVTADRDACGVVRVACSEMback to top mRNA from alignment at H-elongata_contig151709:514..1452+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig151709.3422.1 ID=mRNA_H-elongata_contig151709.3422.1|Name=mRNA_H-elongata_contig151709.3422.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=939bp|location=Sequence derived from alignment at H-elongata_contig151709:514..1452+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig151709:514..1452+ >mRNA_H-elongata_contig151709.3422.1 ID=mRNA_H-elongata_contig151709.3422.1|Name=mRNA_H-elongata_contig151709.3422.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig151709:514..1452+ (Himanthalia elongata Himel1 dioecious)back to top |