prot_H-elongata_contig151566.3413.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig151566.3413.1
Unique Name	prot_H-elongata_contig151566.3413.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	88

Homology

[Close]

BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.190e-26
Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = 0

Query:    4 VAIAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKY 88
            V  A +WHRR+GH+H +SLDILRK  G G+ + G +S CDVCAVG ++Q  HPK A++  +RPFQL   DLMGPF+P A+GG+ Y
Sbjct:  263 VKSAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLY 347

[Close]

BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.990e-24
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 0

Query:    4 VAIAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKY 88
            V  A +WHRR+GH++ +SLD+LR++  +GI + G V DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG+KY
Sbjct:   41 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKY 125

[Close]

BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 4.010e-24
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 0

Query:    4 VAIAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKY 88
            V  A +WHRR+GH++ +SLD+LR++  +GI + G V DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG+KY
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKY 654

[Close]

BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 4.010e-24
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 0

Query:    4 VAIAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKY 88
            V  A +WHRR+GH++++SLDILRK    G+     V DC  CA+GK+ Q  HPK A + V RPFQL + D +GPFTP A+GG+KY
Sbjct:  523 VESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKY 607

[Close]

BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 4.040e-24
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 0

Query:    4 VAIAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKY 88
            V  A +WHRR+GH++ +SLD+LR++  +GI + G V DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG+KY
Sbjct:  692 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKY 776

[Close]

BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 4.050e-24
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 0

Query:    4 VAIAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKY 88
            V  A +WHRR+GH++ +SLD+LR++  +GI + G V DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG+KY
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKY 654

[Close]

BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.660e-22
Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 0

Query:    4 VAIAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKY 88
            V  A +WHRR+GH++ +SLD+LRK    G+ + G V+DC VC +GK+ Q  HPK   + V RPFQ    D +GPFTP A+GG+KY
Sbjct:  283 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKY 367

[Close]

BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.910e-19
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 0

Query:    3 AVAIAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKY 88
            A   A  WHR L HL+ +S+++LRK+   G+ F  +++ CD+CA+ K++QLAHP+  N +   P QL Y D MG  TP+A GG+ Y
Sbjct:  304 ATVNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGY 389

[Close]

BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5JFQ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFQ6_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 3.980e-19
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 0

Query:    7 AQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVA 82
            A  WHRRLGHL+A+SLDILRK  GTG+ +  ++S C VC + K +Q +HPK + H+++RP QL   D MGP  P A
Sbjct:   42 ADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSSHPKQSTHELSRPGQLVVIDNMGPVNPPA 117

[Close]

BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 8.520e-19
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 0

Query:    7 AQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVA 82
            A  WHRRLGHL+A+SLDILRK  GTG+ +  ++S C VC + K +Q  HPK +  +++RP QL   D MGP  P A
Sbjct:   42 ADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPA 117

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot

BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K1J1_9PHAE	1.190e-26	56.47	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KNH5_9PHAE	3.990e-24	50.59	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KJN3_9PHAE	4.010e-24	50.59	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5JBV6_9PHAE	4.010e-24	52.94	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KJH6_9PHAE	4.040e-24	50.59	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J842_9PHAE	4.050e-24	50.59	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KXM1_9PHAE	1.660e-22	50.59	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JYD3_9PHAE	2.910e-19	44.19	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JFQ6_9PHAE	3.980e-19	52.63	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KZ34_9PHAE	8.520e-19	51.32	Integrase catalytic domain-containing protein n=2 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 7..50 e-value: 1.2E-7 score: 31.4

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig151566	contig	H-elongata_contig151566:1268..1531 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig151566.3413.1	mRNA_H-elongata_contig151566.3413.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig151566 1265..1531 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig151566.3413.1 ID=prot_H-elongata_contig151566.3413.1|Name=mRNA_H-elongata_contig151566.3413.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MNAVAIAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKA
QQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKY

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR025724	GAG-pre-integrase_dom