mRNA_H-elongata_contig151566.3413.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151566.3413.1
Unique NamemRNA_H-elongata_contig151566.3413.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.240e-26
Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:   13 VAIAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKY 267
            V  A +WHRR+GH+H +SLDILRK  G G+ + G +S CDVCAVG ++Q  HPK A++  +RPFQL   DLMGPF+P A+GG+ Y
Sbjct:  263 VKSAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLY 347
[Close]
BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 4.160e-24
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:   13 VAIAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKY 267
            V  A +WHRR+GH++ +SLD+LR++  +GI + G V DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG+KY
Sbjct:   41 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKY 125
[Close]
BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 4.170e-24
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:   13 VAIAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKY 267
            V  A +WHRR+GH++ +SLD+LR++  +GI + G V DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG+KY
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKY 654
[Close]
BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 4.180e-24
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:   13 VAIAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKY 267
            V  A +WHRR+GH++++SLDILRK    G+     V DC  CA+GK+ Q  HPK A + V RPFQL + D +GPFTP A+GG+KY
Sbjct:  523 VESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKY 607
[Close]
BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 4.210e-24
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:   13 VAIAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKY 267
            V  A +WHRR+GH++ +SLD+LR++  +GI + G V DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG+KY
Sbjct:  692 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKY 776
[Close]
BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 4.220e-24
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:   13 VAIAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKY 267
            V  A +WHRR+GH++ +SLD+LR++  +GI + G V DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG+KY
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKY 654
[Close]
BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.730e-22
Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:   13 VAIAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKY 267
            V  A +WHRR+GH++ +SLD+LRK    G+ + G V+DC VC +GK+ Q  HPK   + V RPFQ    D +GPFTP A+GG+KY
Sbjct:  283 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKY 367
[Close]
BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.220e-19
Identity = 39/89 (43.82%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    1 AMNAVAIAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKY 267
            A  A   A  WHR L HL+ +S+++LRK+   G+ F  +++ CD+CA+ K++QLAHP+  N +   P QL Y D MG  TP+A GG+ Y
Sbjct:  301 ACAATVNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGY 389
[Close]
BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5JFQ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFQ6_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 4.140e-19
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:   22 AQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVA 249
            A  WHRRLGHL+A+SLDILRK  GTG+ +  ++S C VC + K +Q +HPK + H+++RP QL   D MGP  P A
Sbjct:   42 ADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSSHPKQSTHELSRPGQLVVIDNMGPVNPPA 117
[Close]
BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 8.860e-19
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:   22 AQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVA 249
            A  WHRRLGHL+A+SLDILRK  GTG+ +  ++S C VC + K +Q  HPK +  +++RP QL   D MGP  P A
Sbjct:   42 ADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPA 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151566.3413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE1.240e-2656.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE4.160e-2450.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJN3_9PHAE4.170e-2450.59Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JBV6_9PHAE4.180e-2452.94Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE4.210e-2450.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE4.220e-2450.59Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KXM1_9PHAE1.730e-2250.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYD3_9PHAE2.220e-1943.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFQ6_9PHAE4.140e-1952.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KZ34_9PHAE8.860e-1951.32Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151566contigH-elongata_contig151566:1265..1531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.5
Seed ortholog evalue1.4e-08
Seed eggNOG ortholog4558.Sb02g009798.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size264
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929896.3564043-UTR-H-elongata_contig151566:1264..12671622929896.3564043-UTR-H-elongata_contig151566:1264..1267Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig151566 1265..1267 +
1691679199.1967936-UTR-H-elongata_contig151566:1264..12671691679199.1967936-UTR-H-elongata_contig151566:1264..1267Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig151566 1265..1267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929896.376617-CDS-H-elongata_contig151566:1267..15311622929896.376617-CDS-H-elongata_contig151566:1267..1531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151566 1268..1531 +
1691679199.2076404-CDS-H-elongata_contig151566:1267..15311691679199.2076404-CDS-H-elongata_contig151566:1267..1531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151566 1268..1531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151566.3413.1prot_H-elongata_contig151566.3413.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151566 1268..1531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151566.3413.1

>prot_H-elongata_contig151566.3413.1 ID=prot_H-elongata_contig151566.3413.1|Name=mRNA_H-elongata_contig151566.3413.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MNAVAIAQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKA
QQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKY
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mRNA from alignment at H-elongata_contig151566:1265..1531+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151566.3413.1 ID=mRNA_H-elongata_contig151566.3413.1|Name=mRNA_H-elongata_contig151566.3413.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig151566:1265..1531+ (Himanthalia elongata Himel1 dioecious)
GCAATGAACGCAGTCGCCATTGCCCAGGTGTGGCACCGACGGTTGGGTCA
TCTCCATGCACAGAGCCTGGACATTTTACGCAAGCGATACGGCACTGGCA
TCACCTTCGAGGGGGCCGTCTCGGACTGCGACGTTTGCGCCGTGGGGAAG
GCTCAACAGCTGGCTCATCCCAAAACGGCCAATCACAAGGTCAACCGGCC
TTTCCAGCTGTGCTACGGAGACTTGATGGGGCCCTTCACGCCTGTGGCCA
TAGGCGGCTACAAATAC
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Coding sequence (CDS) from alignment at H-elongata_contig151566:1265..1531+

>mRNA_H-elongata_contig151566.3413.1 ID=mRNA_H-elongata_contig151566.3413.1|Name=mRNA_H-elongata_contig151566.3413.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig151566:1265..1531+ (Himanthalia elongata Himel1 dioecious)
ATGAACGCAGTCGCCATTGCCCAGGTGTGGCACCGACGGTTGGGTCATCT
CCATGCACAGAGCCTGGACATTTTACGCAAGCGATACGGCACTGGCATCA
CCTTCGAGGGGGCCGTCTCGGACTGCGACGTTTGCGCCGTGGGGAAGGCT
CAACAGCTGGCTCATCCCAAAACGGCCAATCACAAGGTCAACCGGCCTTT
CCAGCTGTGCTACGGAGACTTGATGGGGCCCTTCACGCCTGTGGCCATAG
GCGGCTACAAATACATGAACGCAGTCGCCATTGCCCAGGTGTGGCACCGA
CGGTTGGGTCATCTCCATGCACAGAGCCTGGACATTTTACGCAAGCGATA
CGGCACTGGCATCACCTTCGAGGGGGCCGTCTCGGACTGCGACGTTTGCG
CCGTGGGGAAGGCTCAACAGCTGGCTCATCCCAAAACGGCCAATCACAAG
GTCAACCGGCCTTTCCAGCTGTGCTACGGAGACTTGATGGGGCCCTTCAC
GCCTGTGGCCATAGGCGGCTACAAATAC
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