mRNA_H-elongata_contig151409.3405.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151409.3405.1
Unique NamemRNA_H-elongata_contig151409.3405.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig151409.3405.1 vs. uniprot
Match: A0A6H5KC50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC50_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.750e-26
Identity = 47/71 (66.20%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    1 QGRFEFAGLLRVEGRFEGVLKPAAGASVSVTRTGVIVGDIDGCHSVTVDGTVVGNVTASLADLRRHAHVEG 213
            +GR +F GLLRVEGRFEGVLKP  GA++ V R+GVI GD++GCHSV V+GTV+GNV+AS+  LRR+A+V+G
Sbjct:   10 KGRLQFKGLLRVEGRFEGVLKPVEGANMMVARSGVIAGDVEGCHSVIVEGTVIGNVSASVVVLRRYANVQG 80
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BLAST of mRNA_H-elongata_contig151409.3405.1 vs. uniprot
Match: D7G3H0_ECTSI (Globin, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H0_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 4.800e-23
Identity = 48/73 (65.75%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    1 QGRFEFAGLLRVEGRFEGVLKPAAGASVSVTRTGVIVGDIDGCHSVTVDGTVVGNVTASLADLRRHAHVEGCV 219
            QGR +F GLLRVEGRFEGVLK A GA++ V R+GVI GD++GCHSV V+GT++GNV+AS+  LRR+A+V+G V
Sbjct:   46 QGRLQFKGLLRVEGRFEGVLKAAEGANMMVARSGVIAGDVEGCHSVIVEGTIIGNVSASVVVLRRYANVQGNV 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151409.3405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC50_9PHAE2.750e-2666.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3H0_ECTSI4.800e-2365.75Globin, putative n=1 Tax=Ectocarpus siliculosus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151409contigH-elongata_contig151409:597..815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue2e-19
Seed eggNOG ortholog2880.D7G3H0
KEGG koko:K02157,ko:K19838,ko:K21440
KEGG Pathwayko04011,ko04310,ko04390,ko04550,ko04934,ko05165,ko05200,ko05210,ko05213,ko05217,ko05224,ko05225,ko05226,map04011,map04310,map04390,map04550,map04934,map05165,map05200,map05210,map05213,map05217,map05224,map05225,map05226
EggNOG free text desc.positive regulation of GTPase activity
EggNOG OGsKOG3589@1,KOG3589@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929895.5936427-CDS-H-elongata_contig151409:596..8151622929895.5936427-CDS-H-elongata_contig151409:596..815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151409 597..815 +
1691679198.95166-CDS-H-elongata_contig151409:596..8151691679198.95166-CDS-H-elongata_contig151409:596..815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151409 597..815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151409.3405.1prot_H-elongata_contig151409.3405.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151409 597..815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151409.3405.1

>prot_H-elongata_contig151409.3405.1 ID=prot_H-elongata_contig151409.3405.1|Name=mRNA_H-elongata_contig151409.3405.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
QGRFEFAGLLRVEGRFEGVLKPAAGASVSVTRTGVIVGDIDGCHSVTVDG
TVVGNVTASLADLRRHAHVEGCV
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mRNA from alignment at H-elongata_contig151409:597..815+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151409.3405.1 ID=mRNA_H-elongata_contig151409.3405.1|Name=mRNA_H-elongata_contig151409.3405.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig151409:597..815+ (Himanthalia elongata Himel1 dioecious)
CAGGGGCGTTTCGAGTTTGCGGGTCTCCTGCGGGTGGAGGGCCGCTTCGA
GGGGGTGCTCAAGCCCGCTGCGGGCGCAAGCGTTTCGGTTACTCGAACGG
GAGTGATCGTGGGGGACATCGACGGCTGTCACTCAGTTACCGTGGACGGG
ACGGTTGTCGGGAACGTGACCGCGAGCTTGGCGGATCTCCGACGACATGC
TCACGTGGAGGGGTGCGTG
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Coding sequence (CDS) from alignment at H-elongata_contig151409:597..815+

>mRNA_H-elongata_contig151409.3405.1 ID=mRNA_H-elongata_contig151409.3405.1|Name=mRNA_H-elongata_contig151409.3405.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig151409:597..815+ (Himanthalia elongata Himel1 dioecious)
CAGGGGCGTTTCGAGTTTGCGGGTCTCCTGCGGGTGGAGGGCCGCTTCGA
GGGGGTGCTCAAGCCCGCTGCGGGCGCAAGCGTTTCGGTTACTCGAACGG
GAGTGATCGTGGGGGACATCGACGGCTGTCACTCAGTTACCGTGGACGGG
ACGGTTGTCGGGAACGTGACCGCGAGCTTGGCGGATCTCCGACGACATGC
TCACGTGGAGGGGTGCGTGCAGGGGCGTTTCGAGTTTGCGGGTCTCCTGC
GGGTGGAGGGCCGCTTCGAGGGGGTGCTCAAGCCCGCTGCGGGCGCAAGC
GTTTCGGTTACTCGAACGGGAGTGATCGTGGGGGACATCGACGGCTGTCA
CTCAGTTACCGTGGACGGGACGGTTGTCGGGAACGTGACCGCGAGCTTGG
CGGATCTCCGACGACATGCTCACGTGGAGGGGTGCGTG
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