mRNA_H-elongata_contig149679.3321.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149679.3321.1
Unique NamemRNA_H-elongata_contig149679.3321.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig149679.3321.1 vs. uniprot
Match: D7FNC8_ECTSI (Enoyl-ACP reductase enoyl-ACP reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNC8_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 2.850e-48
Identity = 86/112 (76.79%), Postives = 97/112 (86.61%), Query Frame = 1
Query:   22 QAVANYNIMGPAKSSLESCARALAQELGGNPASVGPGGIRVNCLSPGPVRTMAARGITGFDAMRQEAARKAPMGRGASDEEIAGVATFLASSLGSSVTGQTVYADCGFSAVV 357
            +A ANYN+MGPAK+SLESCARALA ELGG+  S GPGG+RVNCLSPGPVRTMAARGI GFD MR+EAA +AP+GR A  +EIA  ATFLAS L S+VTGQT+YADCGFSAVV
Sbjct:  255 RAAANYNVMGPAKASLESCARALAAELGGDTTSQGPGGVRVNCLSPGPVRTMAARGIAGFDQMRREAAGRAPLGRAAEIDEIAAAATFLASPLSSAVTGQTLYADCGFSAVV 366          
BLAST of mRNA_H-elongata_contig149679.3321.1 vs. uniprot
Match: A0A835YLZ8_9STRA (Enoyl-reductase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLZ8_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.100e-35
Identity = 69/110 (62.73%), Postives = 83/110 (75.45%), Query Frame = 1
Query:   28 VANYNIMGPAKSSLESCARALAQELGGNPASVGPGGIRVNCLSPGPVRTMAARGITGFDAMRQEAARKAPMGRGASDEEIAGVATFLASSLGSSVTGQTVYADCGFSAVV 357
            V NYNIMGPAK+SLESCARALA ELG          +RVNCLSPGPVRT+AA+GI GF  M++ A+ +APM R A+ EEI   ATFLAS+  S++TGQ +Y DCGFSAV+
Sbjct:   49 VPNYNIMGPAKASLESCARALAYELGEK-------NVRVNCLSPGPVRTLAAKGIKGFSEMQRMASERAPMQRTANMEEITSSATFLASNYASAITGQIIYVDCGFSAVI 151          
BLAST of mRNA_H-elongata_contig149679.3321.1 vs. uniprot
Match: W2RHY9_PHYPN (Uncharacterized protein n=19 Tax=Phytophthora TaxID=4783 RepID=W2RHY9_PHYPN)

HSP 1 Score: 109 bits (272), Expect = 8.720e-27
Identity = 58/109 (53.21%), Postives = 77/109 (70.64%), Query Frame = 1
Query:   28 VANYNIMGPAKSSLESCARALAQELGGNPASVGPGGIRVNCLSPGPVRTMAARGITGFDAMRQEAARKAPMGRGASDEEIAGVATFLASSLGSSVTGQTVYADCGFSAV 354
            V NYN+MGPAK++LE+ AR LA ELG       P GIRVNCLSPGP+ T++ARGI G   MR+ A   AP+ R +S+ ++  VATFL+S L +++TGQT+Y D G  A+
Sbjct:  168 VPNYNVMGPAKAALEATARQLAYELG-------PEGIRVNCLSPGPMNTVSARGIPGISKMRKYAENHAPLRRNSSNGDVGSVATFLSSDLAAAITGQTIYVDGGLGAM 269          
BLAST of mRNA_H-elongata_contig149679.3321.1 vs. uniprot
Match: A0A0P1A8U3_PLAHL (Short-chain dehydrogenase reductase sdr n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8U3_PLAHL)

HSP 1 Score: 107 bits (266), Expect = 5.990e-26
Identity = 57/109 (52.29%), Postives = 76/109 (69.72%), Query Frame = 1
Query:   28 VANYNIMGPAKSSLESCARALAQELGGNPASVGPGGIRVNCLSPGPVRTMAARGITGFDAMRQEAARKAPMGRGASDEEIAGVATFLASSLGSSVTGQTVYADCGFSAV 354
            V NYN+MGPAK++LE+ AR LA ELG       P GIRVNCLSPGP+ T++ARGI G   MR  A   AP+ R +S+ ++  VA FL+S L ++V+GQT++ D G SA+
Sbjct:  163 VPNYNVMGPAKAALEATARQLAYELG-------PDGIRVNCLSPGPINTVSARGIPGISKMRTYAETHAPLRRNSSNSDVGSVAAFLSSDLAAAVSGQTIFVDGGLSAM 264          
BLAST of mRNA_H-elongata_contig149679.3321.1 vs. uniprot
Match: A0A4Y8PHD6_9BACT (Enoyl-[acyl-carrier-protein] reductase [NADH] n=2 Tax=unclassified Methylacidiphilum TaxID=2628272 RepID=A0A4Y8PHD6_9BACT)

HSP 1 Score: 106 bits (264), Expect = 9.280e-26
Identity = 55/107 (51.40%), Postives = 72/107 (67.29%), Query Frame = 1
Query:   28 VANYNIMGPAKSSLESCARALAQELGGNPASVGPGGIRVNCLSPGPVRTMAARGITGFDAMRQEAARKAPMGRGASDEEIAGVATFLASSLGSSVTGQTVYADCGFS 348
            ++NY IMGPAK++LES  R LA ELG +       GIRVN LSPGP+ T+AARGITGF    +E A K+P+G+     ++A  A FLA     ++TGQT+Y DCG+S
Sbjct:  156 ISNYKIMGPAKAALESAVRYLAYELGKD-------GIRVNALSPGPINTLAARGITGFTKFLKECASKSPLGKNTEASDVASAALFLAKDESRAITGQTIYIDCGYS 255          
BLAST of mRNA_H-elongata_contig149679.3321.1 vs. uniprot
Match: D0MUJ3_PHYIT (Enoyl-[acyl-carrier-protein] reductase [NADH], putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MUJ3_PHYIT)

HSP 1 Score: 105 bits (263), Expect = 1.630e-25
Identity = 58/109 (53.21%), Postives = 75/109 (68.81%), Query Frame = 1
Query:   28 VANYNIMGPAKSSLESCARALAQELGGNPASVGPGGIRVNCLSPGPVRTMAARGITGFDAMRQEAARKAPMGRGASDEEIAGVATFLASSLGSSVTGQTVYADCGFSAV 354
            V NYN+MGPAK++LE+ AR LA ELG       P GIRVNCLSPGP+ T++ARGI G   MR+ A   AP+ R +S  ++  VA FL+S L ++VTGQT + D G SA+
Sbjct:  165 VPNYNVMGPAKAALEATARQLAYELG-------PDGIRVNCLSPGPMNTVSARGIPGISKMRRYAENHAPLRRNSSSGDVGSVAAFLSSDLAAAVTGQTFHVDGGLSAM 266          
BLAST of mRNA_H-elongata_contig149679.3321.1 vs. uniprot
Match: B3DWM4_METI4 (Enoyl-[acyl-carrier-protein] reductase [NADH] n=4 Tax=Methylacidiphilum TaxID=511745 RepID=B3DWM4_METI4)

HSP 1 Score: 105 bits (261), Expect = 3.560e-25
Identity = 55/107 (51.40%), Postives = 73/107 (68.22%), Query Frame = 1
Query:   28 VANYNIMGPAKSSLESCARALAQELGGNPASVGPGGIRVNCLSPGPVRTMAARGITGFDAMRQEAARKAPMGRGASDEEIAGVATFLASSLGSSVTGQTVYADCGFS 348
            ++NY IMGPAK++LES  R LA ELG +       GIRVN LSPGP+ T+AARGI+GF    +E A K+P+GR     ++A  A FLA+    ++TGQT+Y DCG+S
Sbjct:  172 ISNYKIMGPAKAALESTVRYLAYELGKD-------GIRVNALSPGPINTLAARGISGFTKFLKECASKSPLGRNTETTDVASAALFLATDESRAITGQTLYIDCGYS 271          
BLAST of mRNA_H-elongata_contig149679.3321.1 vs. uniprot
Match: A0A2W6Y1T1_9RHOO (Enoyl-[acyl-carrier-protein] reductase [NADH] n=3 Tax=Betaproteobacteria TaxID=28216 RepID=A0A2W6Y1T1_9RHOO)

HSP 1 Score: 104 bits (259), Expect = 4.920e-25
Identity = 57/111 (51.35%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   22 QAVANYNIMGPAKSSLESCARALAQELGGNPASVGPGGIRVNCLSPGPVRTMAARGITGFDAMRQEAARKAPMGRGASDEEIAGVATFLASSLGSSVTGQTVYADCGFSAV 354
            +AV NY +MGP K++LES  R +A ELG       P GIRV+ +SPGP+ T AA GI  FD +   A RK+P+GR  + EEIAG+ TFL S   S +TGQT+Y D G+ AV
Sbjct:  153 EAVPNYGLMGPVKAALESMVRYMAMELG-------PAGIRVHAVSPGPILTRAASGIASFDELMDSAIRKSPLGRLVTLEEIAGLTTFLCSDAASGMTGQTLYVDAGYHAV 256          
BLAST of mRNA_H-elongata_contig149679.3321.1 vs. uniprot
Match: A0A8K1FCD2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCD2_PYTOL)

HSP 1 Score: 104 bits (259), Expect = 6.910e-25
Identity = 59/107 (55.14%), Postives = 73/107 (68.22%), Query Frame = 1
Query:   28 VANYNIMGPAKSSLESCARALAQELGGNPASVGPGGIRVNCLSPGPVRTMAARGITGFDAMRQEAARKAPMGRGASDEEIAGVATFLASSLGSSVTGQTVYADCGFS 348
            V NYNIMGPAK++LE+  R LA ELG         GIRVNCLSPGP+ T++ARGI G   MR+ A   AP+ R AS EE+  +A FLAS+  S++TGQT+Y D G S
Sbjct:  164 VPNYNIMGPAKAALEATTRQLAFELGVE-------GIRVNCLSPGPMNTVSARGIPGISKMRKYAEEHAPLHRNASGEEVGELAAFLASNSASAITGQTLYVDGGLS 263          
BLAST of mRNA_H-elongata_contig149679.3321.1 vs. uniprot
Match: A0A7W8I6A5_9DEIO (Enoyl-[acyl-carrier-protein] reductase [NADH] n=4 Tax=Deinococcus TaxID=1298 RepID=A0A7W8I6A5_9DEIO)

HSP 1 Score: 103 bits (257), Expect = 1.060e-24
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 1
Query:   22 QAVANYNIMGPAKSSLESCARALAQELGGNPASVGPGGIRVNCLSPGPVRTMAARGITGFDAMRQEAARKAPMGRGASDEEIAGVATFLASSLGSSVTGQTVYADCGFS 348
            Q V  YN+MG AK++LE+  R LA ELG         G+RVN +S GP+RT+AAR I GF  M ++AA+ AP+GR A+ EE+  +A FL S LGS +TGQTVY D G S
Sbjct:  153 QVVPKYNVMGVAKAALEAATRYLASELGAQ-------GVRVNTISAGPMRTIAARSIPGFGTMYEKAAQSAPLGRNATPEEVGKLALFLLSDLGSGITGQTVYVDAGAS 254          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149679.3321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNC8_ECTSI2.850e-4876.79Enoyl-ACP reductase enoyl-ACP reductase n=2 Tax=Ec... [more]
A0A835YLZ8_9STRA1.100e-3562.73Enoyl-reductase-domain-containing protein n=1 Tax=... [more]
W2RHY9_PHYPN8.720e-2753.21Uncharacterized protein n=19 Tax=Phytophthora TaxI... [more]
A0A0P1A8U3_PLAHL5.990e-2652.29Short-chain dehydrogenase reductase sdr n=1 Tax=Pl... [more]
A0A4Y8PHD6_9BACT9.280e-2651.40Enoyl-[acyl-carrier-protein] reductase [NADH] n=2 ... [more]
D0MUJ3_PHYIT1.630e-2553.21Enoyl-[acyl-carrier-protein] reductase [NADH], put... [more]
B3DWM4_METI43.560e-2551.40Enoyl-[acyl-carrier-protein] reductase [NADH] n=4 ... [more]
A0A2W6Y1T1_9RHOO4.920e-2551.35Enoyl-[acyl-carrier-protein] reductase [NADH] n=3 ... [more]
A0A8K1FCD2_PYTOL6.910e-2555.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7W8I6A5_9DEIO1.060e-2452.29Enoyl-[acyl-carrier-protein] reductase [NADH] n=4 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149679contigH-elongata_contig149679:312..671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue5.7e-40
Seed eggNOG ortholog2880.D7FNC8
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG0725@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionenoyl-ACP reductase enoyl-ACP reductase
Ec32 orthologEc-22_001230.1
Exons1
Model size360
Cds size360
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929884.8408604-CDS-H-elongata_contig149679:311..6711622929884.8408604-CDS-H-elongata_contig149679:311..671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149679 312..671 +
1691679195.0401587-CDS-H-elongata_contig149679:311..6711691679195.0401587-CDS-H-elongata_contig149679:311..671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149679 312..671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149679.3321.1prot_H-elongata_contig149679.3321.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149679 312..671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149679.3321.1

>prot_H-elongata_contig149679.3321.1 ID=prot_H-elongata_contig149679.3321.1|Name=mRNA_H-elongata_contig149679.3321.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MSSSVWWQAVANYNIMGPAKSSLESCARALAQELGGNPASVGPGGIRVNC
LSPGPVRTMAARGITGFDAMRQEAARKAPMGRGASDEEIAGVATFLASSL
GSSVTGQTVYADCGFSAVV*
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mRNA from alignment at H-elongata_contig149679:312..671+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149679.3321.1 ID=mRNA_H-elongata_contig149679.3321.1|Name=mRNA_H-elongata_contig149679.3321.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at H-elongata_contig149679:312..671+ (Himanthalia elongata Himel1 dioecious)
ATGTCGTCGTCCGTGTGGTGGCAGGCAGTTGCGAATTACAACATCATGGG GCCGGCGAAGTCCTCCCTGGAGAGCTGCGCCCGTGCCCTGGCACAAGAGC TCGGGGGAAATCCCGCGAGCGTCGGCCCTGGTGGAATCCGCGTGAACTGT CTCAGCCCGGGACCCGTGCGGACCATGGCGGCGCGAGGCATCACGGGTTT CGATGCAATGAGGCAGGAGGCGGCAAGAAAGGCCCCGATGGGGAGGGGCG CGAGCGACGAAGAGATAGCAGGGGTGGCAACATTTTTGGCGTCGTCCTTG GGATCATCGGTAACGGGGCAGACGGTGTACGCAGACTGCGGCTTCAGCGC CGTCGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig149679:312..671+

>mRNA_H-elongata_contig149679.3321.1 ID=mRNA_H-elongata_contig149679.3321.1|Name=mRNA_H-elongata_contig149679.3321.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig149679:312..671+ (Himanthalia elongata Himel1 dioecious)
ATGTCGTCGTCCGTGTGGTGGCAGGCAGTTGCGAATTACAACATCATGGG
GCCGGCGAAGTCCTCCCTGGAGAGCTGCGCCCGTGCCCTGGCACAAGAGC
TCGGGGGAAATCCCGCGAGCGTCGGCCCTGGTGGAATCCGCGTGAACTGT
CTCAGCCCGGGACCCGTGCGGACCATGGCGGCGCGAGGCATCACGGGTTT
CGATGCAATGAGGCAGGAGGCGGCAAGAAAGGCCCCGATGGGGAGGGGCG
CGAGCGACGAAGAGATAGCAGGGGTGGCAACATTTTTGGCGTCGTCCTTG
GGATCATCGGTAACGGGGCAGACGGTGTACGCAGACTGCGGCTTCAGCGC
CGTCGTGTGAATGTCGTCGTCCGTGTGGTGGCAGGCAGTTGCGAATTACA
ACATCATGGGGCCGGCGAAGTCCTCCCTGGAGAGCTGCGCCCGTGCCCTG
GCACAAGAGCTCGGGGGAAATCCCGCGAGCGTCGGCCCTGGTGGAATCCG
CGTGAACTGTCTCAGCCCGGGACCCGTGCGGACCATGGCGGCGCGAGGCA
TCACGGGTTTCGATGCAATGAGGCAGGAGGCGGCAAGAAAGGCCCCGATG
GGGAGGGGCGCGAGCGACGAAGAGATAGCAGGGGTGGCAACATTTTTGGC
GTCGTCCTTGGGATCATCGGTAACGGGGCAGACGGTGTACGCAGACTGCG
GCTTCAGCGCCGTCGTGTGA
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