mRNA_H-elongata_contig14944.3308.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14944.3308.1
Unique NamemRNA_H-elongata_contig14944.3308.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 493 bits (1270), Expect = 6.670e-166
Identity = 256/505 (50.69%), Postives = 335/505 (66.34%), Query Frame = 1
Query:   22 KEIASLKKHGVYDLVPASSVPAGQRVVGSRWANKFKADNRFKGRLVVLGWAQVPGIHCDGTFAFVCRLKIIRMILAVAAELDYDVLILDAKTAFLNAGVKEEVCVKMAPGYATFDKSGIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYVLEDDKTSNAILTIYVDGIMLLGKNKQL----------LGKLKNQ---LMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELIN 1497
            +E+ SL    VY LVP S+VP G++ + S+W  K KAD  FKGR+V  GW QVPG+ C  T+A VCR++ +RM+  +  E +     +D  TAFL A ++EEV V+  PG+   DK G   VMKL KSLYGL QSP NWF TID  L  IGF +LKSDPCVY L D   +   LT+YVD ++L G +             LG +  Q   L   F+M DLG+ S  L M + RDRE   +TI Q+ Y + IL R+GM+      TPG GSEI   Q  D LLDE+E ++YQ I  +LMY+AQ+ RY I++A  QLAR+++KPSK HM AAKH LRYLA   +FS TY++GGFKL T++D+NW  NPDNGKSTSSY+ +  N P+SF+  LQ LTA STM+AELVA+A AMKE++FC N M ELG  + F  +PVY D+ +  H  GNR+FSSR KHI L++FF+++LV EG+++ H+V TE  LAD+GTK+  KHR   L++LIN
Sbjct:  151 REMKSLSNRKVYKLVPRSAVPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVY-LYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLIN 654          
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 508 bits (1307), Expect = 3.150e-161
Identity = 256/501 (51.10%), Postives = 338/501 (67.47%), Query Frame = 1
Query:    1 QWKAATYKEIASLKKHGVYDLVPASSVPAGQRVVGSRWANKFKADNRFKGRLVVLGWAQVPGIHCDGTFAFVCRLKIIRMILAVAAELDYDVLILDAKTAFLNAGVKEEVCVKMAPGYATFDKSGIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYVLEDDKTSNAILTIYVDGIMLLGKNKQLLGKLKNQLMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELINEF 1503
            +W AA  +E+ SL    VY LVP S+VP  ++ + S+W  K KAD  FKGR+V  GW QVPG+ C  T+A VCR++ +RM+  +  E +     +D  TAFL A ++EEV V+  PG+   DK G   VMKL KSLYGL QSP NWF TID  L  IGF +LKSDPCVY L D   +   LT+YVD ++L G +   +  +K +L   F+M DLG+ S VL M + RDRE   +TI Q+ Y + IL R+G++      TPG GSEI   Q  D LLDE+E ++YQ I  +LMY+AQ+ RY I++A  QLAR ++KPSK HM AAKH LRYLA   +FS TY++GGFKL T++D+NW  NPDNGKSTSSY+ +  N P+SF+  LQ LTA STM+AELVA+A AM E++F  N M ELGF + F  +PVY D+ +  H  GNR+FSSR KHI L++FF+++LV EG+++ H+V TE  LAD+GTK+  KHR   L++LIN F
Sbjct: 1165 KWNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVY-LYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664          
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 474 bits (1221), Expect = 2.370e-154
Identity = 247/501 (49.30%), Postives = 324/501 (64.67%), Query Frame = 1
Query:    1 QWKAATYKEIASLKKHGVYDLVPASSVPAGQRVVGSRWANKFKADNRFKGRLVVLGWAQVPGIHCDGTFAFVCRLKIIRMILAVAAELDYDVLILDAKTAFLNAGVKEEVCVKMAPGYATFDKSGIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYVLEDDKTSNAILTIYVDGIMLLGKNKQLLGKLKNQLMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELINEF 1503
            +W AA  +E+ SL    VY LVP S VP  ++ + S+W  K KAD  FKGR+V  GW QVPG+ C  T+A VCR++ +RM+  +  + +   LI D                         D  G   VMKL KSLYGL QSP NWF TID  L  IGF +LKSDPCVY L D   +   LT+YVD ++L G +   +  +K +L   F+M DLG+ S VL M + RDRE   +TI Q+ Y + IL R+GM+      TPG GSEI   Q  D LLDE+E ++YQ I  +LMY+AQ+ RY I++A  QLAR ++KPSK HM AAKH LRYLA   +FS TY++GGFKL T++D+NW  NPDNGKSTSSY+ +  N P+SF+  LQ LTA STM+AELVA+A AMKE++FC N M ELGF + F  +PVY D+ +  H  GNR+FSSR KHI L++FF+++LV EG+++ H+V+TE  LAD+GTK+   HR   L++LIN F
Sbjct:  523 KWNAAAEREMKSLSDRKVYKLVPRSGVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVDFN---LIFDQ-----------------------MDDGG-DMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVY-LYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995          
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 459 bits (1180), Expect = 6.790e-151
Identity = 242/500 (48.40%), Postives = 317/500 (63.40%), Query Frame = 1
Query:    4 WKAATYKEIASLKKHGVYDLVPASSVPAGQRVVGSRWANKFKADNRFKGRLVVLGWAQVPGIHCDGTFAFVCRLKIIRMILAVAAELDYDVLILDAKTAFLNAGVKEEVCVKMAPGYATFDKSGIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYVLEDDKTSNAILTIYVDGIMLLGKNKQLLGKLKNQLMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELINEF 1503
            WKAAT KEI SL+   VY LVP + VP G  V+GS+W  K K +N  K RLV  GW QVPG  C GTFA VCRL+ IRM+ A+AAE D DV+ LD KTAFL A ++E V V+MAPGY   +   +  VMKL+KSL GL QSP++W  TID  L  IGF  LKSD CVY+ + + T   +LT+YVD ++++                                        G       NYT  IL R+GM  C    T G G E+  +Q  + LL+ + KQRYQ+I  ++MYLAQ++RY I++  +Q ARA+S PSK HMGAAKH+LRYL+   +FS TY+RGGF LT  ++AN G N DNGKS SSYI++    P S K  LQSLTA ST++AELVA+A AMKE +FC N M ELGF   F S P+++DS +  +V GN+TFS   KH+ L++F+++K+VKEG+++ H++ TE  LAD+GT+YL K RH +LI+ I  F
Sbjct:  317 WKAATDKEIKSLQDLKVYKLVPRTDVPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTV-VVLTLYVDDLLII---------------------------------------RGGAHHQPGNYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLIDKIKNF 776          
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 428 bits (1100), Expect = 2.680e-143
Identity = 217/408 (53.19%), Postives = 282/408 (69.12%), Query Frame = 1
Query:  283 LDAKTAFLNAGVKEEVCVKMAPGYATFDKS-GIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYVLEDDKTSNAILTIYVDGIMLLGKNKQLLGKLKNQLMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELINEF 1503
            +D  TAFL A ++EEV V+  PG+   DK  G   VMKL KSLYGL QSP NWF TID  +  IGF +LKSDPCVY L D   +   LT+YVD ++L G +   +  +K +L   F+M DLG+ S VL M + RDRE   +TI Q+ Y + IL R+GM+      TPG GSEI   Q  D LLDE+E ++YQ I  +LMY+AQ+ RY I++A  QLAR ++KPSK HM AAKH LRYLA   +FS TY++GGFKL T++D+NW  NPDNGKSTSSY+ +  N P+SF+  LQ LTA STM+AELVA+A AMKE++FC N M ELGF + F  +PVY D+ +  H  GNR+FSSR KHI L++FF+++LV EG+++ H+  TE  LAD+GTK+  KHR   L++LIN F
Sbjct:   29 MDVSTAFLYADIQEEVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVY-LYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435          
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 424 bits (1090), Expect = 1.630e-136
Identity = 223/502 (44.42%), Postives = 326/502 (64.94%), Query Frame = 1
Query:    1 QWKAATYKEIASLKKHGVYDLVPASSVPAGQRVVGSRWANKFKADNRFKGRLVVLGWAQVPGIHCDGTFAFVCRLKIIRMILAVAAELDYDVLILDAKTAFLNAGVKEEVCVKMAPGYATFDKS-GIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYVLEDDKTSNAILTIYVDGIMLLGKNKQLLGKLKNQLMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELINEF 1503
            +WK A  KE+ +L+KH VY+LVP SSVP G++++G+++  K K D RFK RLVV G  Q PG     ++A VCR+  IRM  A+    ++ +  LD   AFLNA    +V V+ APG +  + + G P V KL++SLYGL QSP  W  T+D+ L+  G++  +SDPCVYV         ILT+YVD I++ G ++QL+ + K +L D FEM D+G+V ++L ++V RD E G + I Q++Y   +L R+GM   N   TPG G+EI   Q  D++L   +K+ YQS+T +++YLAQ +R+ + +A  QL++A S P++ +M AAKHVLRYL         Y+RG F+L  +TD+++G NPDNG+ST+ Y+     G IS+  + Q+LTAQST++AE+ A + + +E+++  N M EL F + F SVP+  DS  A  VAGN   S R KH+TL+YFF+++LV  GQ+T H   +EHQLAD+ TKYL KHR   +I+ I +F
Sbjct:  356 EWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNII-VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDF 855          
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 414 bits (1063), Expect = 2.570e-134
Identity = 219/502 (43.63%), Postives = 322/502 (64.14%), Query Frame = 1
Query:    1 QWKAATYKEIASLKKHGVYDLVPASSVPAGQRVVGSRWANKFKADNRFKGRLVVLGWAQVPGIHCDGTFAFVCRLKIIRMILAVAAELDYDVLILDAKTAFLNAGVKEEVCVKMAPGYATFDKS-GIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYVLEDDKTSNAILTIYVDGIMLLGKNKQLLGKLKNQLMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELINEF 1503
            +WK A  KE+ +L+KH VY LVP SSVP G++++G+++  K   D RFK RLVV G  Q PG     ++A VCR+  IRM  A+    ++ +  LD   AFLNA    +V V+ APG +  + + G P V KL++SLYGL QS   W  T+D+ L+ +G++  +SDPCVYV         ILT+YVD I++ G ++QL+ + K +L D FEM D+G+V ++L ++V RD E G + I Q++Y   +L R+GM   N   TPG G+EI   Q  D++L   +K+ YQS+  +++YLAQ +R+ + +A  QL++A S P++ +M AAKHVLRYL         Y+RG F+L  +TD+++G NPDNG+ST+ Y+     G IS+  + Q+LTAQST++AE+ A + + +E+++  N M EL F + F SVP+  DS  A  VAGN   S R KH+ L+YFF+++LV  GQ+T H   +EHQLAD+ TKYL KHR   +I+ I +F
Sbjct:  200 EWKGACSKEMYNLRKHNVYILVPLSSVPEGEKILGTKFVFKKTLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNII-VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDF 699          
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 402 bits (1034), Expect = 1.070e-132
Identity = 215/491 (43.79%), Postives = 315/491 (64.15%), Query Frame = 1
Query:   34 SLKKHGVYDLVPASSVPAGQRVVGSRWANKFKADNRFKGRLVVLGWAQVPGIHCDGTFAFVCRLKIIRMILAVAAELDYDVLILDAKTAFLNAGVKEEVCVKMAPGYATFDKS-GIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYVLEDDKTSNAILTIYVDGIMLLGKNKQLLGKLKNQLMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELINEF 1503
            +L+KH VY+LVP SSVP G++++G+++  K K D RFK RLVV G  Q PG     ++A VCR+  IRM  A+    ++ +  LD   AFLNA     V V+ APG +  + + G P V KL++SLYGL QSP  W  T+D+ L+  G++  +SDPCVYV         ILT+YVD I++ G ++QL+ + K +L D FEM D+G+V ++L ++V RD E G + I Q++Y    L R+GM   N   T G G+EI   Q  D++L   +K+ YQS+T +++YLAQ +++ + +A  QL++A S P++ +M AAKHVLRYL         Y+RG F+L  +TD+++G NPDNG+ST+ Y+     G IS+  + Q+LTAQST++AE+ A + + +E+++  N M EL F + F SVP+  DS  A  VAGN   S R KH+ L+YFF+++LV  GQ+T H   +EHQLAD+ TKYL KHR   +I+ I +F
Sbjct:    3 NLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNII-VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDF 491          
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 407 bits (1045), Expect = 3.190e-131
Identity = 221/505 (43.76%), Postives = 321/505 (63.56%), Query Frame = 1
Query:    1 QWKAATYKEIASLKKHGVYDLVPASSVPAGQRVVGSRWANKFKADNRFKGRLVVLGWAQVPGIHCDGTFAFVCRLKIIRMILAVAAELDYDVLILDAKTAFLNAGVKEEVCVKMAPGYATFDKS-GIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYV-LEDDKTSNAILTIYVDGIMLLGKNKQLLGKLKNQLMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELINEFRA 1509
            QWK+A   E+ +L KH V+  V  S VP  + +  +R+  K KAD+RFK RLV  G  Q  G H    +A V RL  IRM+ A+A E  ++V  LD   AFLNA    +V V+ APG    D + G   V KL+KSLYGL QSP  W   I+D L   G++  +SDPCVY+ +  D+ +  IL IYVD I++ G NK+++ + K +LMD FEM D+G+V +V+ + V RD E+G + I Q  Y  DIL RYGM   N   TPG G E+  EQ  D+LL  ++KQR+Q+IT +L+YLAQ +RY + +AV+QL RA + P++ HM AAKH+LRYL    +    Y++G F+L+ +TD+++G NPDNG+ST+ Y+     G IS+  + Q+L AQ+T++AEL A + + +E+++  N M E+GF + F+SVP+  DS  A  VA N  FSSR KHI L++FF+++L K  ++T H   +   LAD+ TK+L K R   +++LI +++ 
Sbjct:  233 QWKSAIDTEMGNLAKHKVFKKVRISLVPKDEDIFDTRFVFKIKADSRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELT--ILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGF-KTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLIKDYKC 734          
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 388 bits (997), Expect = 6.430e-124
Identity = 212/503 (42.15%), Postives = 293/503 (58.25%), Query Frame = 1
Query:    1 QWKAATYKEIASLKKHGVYDLVPASSVPAGQRVVGSRWANKFKADNRFKGRLVVLGWAQVPGIHCDGTFAFVCRLKIIRMILAVAAELDYDVLILDAKTAFLNAGVKEEVCVKMAPGYATFDKSGIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYVLEDDKTSNAILTIYVDGIMLLGKNKQLLGKLKNQLMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELINEFRA 1509
            QW AA  +EIA LK   VY LV  S+VP G+R +  RW  +                                    +R++L +  E D  ++ +D   AFL A ++E+V V+  PG+    ++G   VM L+KSLY L QSP NWF TID  L +IGF  LK DPCVY  + D  S   LT+ VD ++L G N   L                   S +  M + RDRE G ++I ++ Y++ IL R+GM+ C    TPG+G      Q  + LL+++E +RYQ I   L+YL+QI RY I++A +QLAR ++KPSK HMGAAK   RYLA    F   Y+RGGFKLT +TD+NWG NPDNGKSTSS++ +  + P++FK  LQSLT QSTM+ ELVAAA A+KE++FC N + ELGF +    VP+Y D+ +  H  GNR++SS  KHI L++FF+++LV EG++  H+V  +   AD+GTK+L K R   L+ +I  F  
Sbjct:  270 QWIAAAEREIADLKDRKVYKLVLRSTVPRGRRRINFRWVTQS-----------------------------------VRVLLCITVEFDLIIVQMDVTAAFLYADIQEDVYVEQPPGFEVKGENGEDLVMLLQKSLYWLAQSPGNWFHTIDPFLISIGFVPLKPDPCVYFYDHDG-SQMYLTLSVDDLLLAGNNSDALSI----------------ASLISGMEIKRDRERGTLSISREAYSKSILDRFGMSACKPTSTPGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNFNV 720          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JME8_9PHAE6.670e-16650.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE3.150e-16151.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE2.370e-15449.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6R7_9PHAE6.790e-15148.40Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L5U2_9PHAE2.680e-14353.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE1.630e-13644.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE2.570e-13443.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE1.070e-13243.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF46_9PHAE3.190e-13143.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JG39_9PHAE6.430e-12442.15Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14944contigH-elongata_contig14944:416..1927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score135.6
Seed ortholog evalue3.3e-29
Seed eggNOG ortholog7070.TC002223-PA
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SH01@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1512
Cds size762
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929883.8808668-CDS-H-elongata_contig14944:415..11771622929883.8808668-CDS-H-elongata_contig14944:415..1177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14944 416..1177 -
1691679194.635769-CDS-H-elongata_contig14944:415..11771691679194.635769-CDS-H-elongata_contig14944:415..1177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14944 416..1177 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929883.8977082-UTR-H-elongata_contig14944:1177..19271622929883.8977082-UTR-H-elongata_contig14944:1177..1927Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14944 1178..1927 -
1691679194.6473186-UTR-H-elongata_contig14944:1177..19271691679194.6473186-UTR-H-elongata_contig14944:1177..1927Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14944 1178..1927 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14944.3308.1prot_H-elongata_contig14944.3308.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14944 416..1177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14944.3308.1

>prot_H-elongata_contig14944.3308.1 ID=prot_H-elongata_contig14944.3308.1|Name=mRNA_H-elongata_contig14944.3308.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp
MTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRY
GILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTT
YTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAA
ATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKH
ITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELINE
FRA*
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mRNA from alignment at H-elongata_contig14944:416..1927-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14944.3308.1 ID=mRNA_H-elongata_contig14944.3308.1|Name=mRNA_H-elongata_contig14944.3308.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1512bp|location=Sequence derived from alignment at H-elongata_contig14944:416..1927- (Himanthalia elongata Himel1 dioecious)
CAATGGAAGGCGGCGACATATAAGGAGATCGCTAGCCTCAAGAAGCACGG CGTTTACGACCTGGTGCCTGCTTCGTCCGTCCCTGCTGGACAGAGAGTGG TTGGCTCACGCTGGGCCAACAAATTCAAGGCCGACAATCGCTTCAAAGGT CGACTGGTAGTGCTGGGATGGGCGCAGGTACCCGGGATCCACTGCGACGG CACCTTCGCATTCGTCTGTAGACTGAAAATCATCCGCATGATTCTGGCCG TCGCGGCCGAGCTCGACTACGACGTGCTCATATTGGACGCGAAAACAGCG TTCCTCAACGCTGGCGTCAAGGAGGAGGTCTGCGTCAAGATGGCTCCCGG CTACGCGACATTTGACAAGTCCGGAATTCCGTTTGTGATGAAACTCAAGA AGAGTCTCTACGGCCTTCGACAAAGCCCCAAGAACTGGTTTGGCACCATA GACGATCATCTCTCGACCATCGGTTTCCGCTCGCTCAAGTCGGATCCGTG CGTTTACGTGTTGGAAGACGACAAAACTAGCAATGCCATCCTGACAATTT ATGTAGATGGCATTATGCTGCTTGGCAAGAACAAGCAGCTTCTCGGAAAG CTGAAGAATCAGCTAATGGACCATTTCGAGATGAGGGACCTCGGAGACGT GTCGAAGGTGCTCGACATGAACGTTACCCGGGACCGAGAAAACGGGATGA TCACCATCGACCAGAAGAACTACACGGAAGACATTCTCTAGCGCTACGGT ATGACACACTGCAACGTTGCGTTTACGCCAGGCGTGGGATCGGAGATCTT CTTCGAACAGTCGGTAGACAGGCTGTTGGACGAACAAGAAAAGCAGAGAT ATCAGTCCATCACCGATGCACTAATGTATCTCGCACAGATCTCGCGATAC GGCATTCTTTTCGCGGTCAATCAATTAGCGAGAGCAATATCCAAGCCCTC GAAAGCTCACATGGGGGCGGCGAAACACGTACTCCGGTACTTGGCCGAGC CCGCTAATTTCTCGAACACCTACAGGCGAGGTGGATTTAAACTAACGACT TACACTGACGCAAACTGGGGAAGGAATCCCGACAACGGCAAGTCTACGTC GTCGTATATCGTGATATTCGACAACGGGCCGATCAGCTTCAAAGTGGAAC TCCAGAGTCTGACGGCTCAATCGACTATGAAGGCGGAACTCGTGGCAGCT GCCACAGCAATGAAGGAGTCACTCTTCTGCAGAAACACGATGATGGAGTT AGGTTTCACAGAGGGATTTCAAAGCGTTCCTGTTTACGTCGACAGCATAT CGGCGTTCCACGTGGCGGGAAACAGGACCTTTAGCTCAAGGGCGAAACAC ATCACCCTGAAATACTTTTTCGTTCAAAAGCTAGTGAAGGAAGGACAGGT CACCACCCACTTCGTCAAGACGGAGCACCAACTCGCCGATCTAGGAACGA AATATCTCAAGAAGCATCGTCACCACTTCCTCATCGAGCTCATCAACGAG TTCAGAGCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig14944:416..1927-

>mRNA_H-elongata_contig14944.3308.1 ID=mRNA_H-elongata_contig14944.3308.1|Name=mRNA_H-elongata_contig14944.3308.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig14944:416..1927- (Himanthalia elongata Himel1 dioecious)
ATGACACACTGCAACGTTGCGTTTACGCCAGGCGTGGGATCGGAGATCTT
CTTCGAACAGTCGGTAGACAGGCTGTTGGACGAACAAGAAAAGCAGAGAT
ATCAGTCCATCACCGATGCACTAATGTATCTCGCACAGATCTCGCGATAC
GGCATTCTTTTCGCGGTCAATCAATTAGCGAGAGCAATATCCAAGCCCTC
GAAAGCTCACATGGGGGCGGCGAAACACGTACTCCGGTACTTGGCCGAGC
CCGCTAATTTCTCGAACACCTACAGGCGAGGTGGATTTAAACTAACGACT
TACACTGACGCAAACTGGGGAAGGAATCCCGACAACGGCAAGTCTACGTC
GTCGTATATCGTGATATTCGACAACGGGCCGATCAGCTTCAAAGTGGAAC
TCCAGAGTCTGACGGCTCAATCGACTATGAAGGCGGAACTCGTGGCAGCT
GCCACAGCAATGAAGGAGTCACTCTTCTGCAGAAACACGATGATGGAGTT
AGGTTTCACAGAGGGATTTCAAAGCGTTCCTGTTTACGTCGACAGCATAT
CGGCGTTCCACGTGGCGGGAAACAGGACCTTTAGCTCAAGGGCGAAACAC
ATCACCCTGAAATACTTTTTCGTTCAAAAGCTAGTGAAGGAAGGACAGGT
CACCACCCACTTCGTCAAGACGGAGCACCAACTCGCCGATCTAGGAACGA
AATATCTCAAGAAGCATCGTCACCACTTCCTCATCGAGCTCATCAACGAG
TTCAGAGCCTGAATGACACACTGCAACGTTGCGTTTACGCCAGGCGTGGG
ATCGGAGATCTTCTTCGAACAGTCGGTAGACAGGCTGTTGGACGAACAAG
AAAAGCAGAGATATCAGTCCATCACCGATGCACTAATGTATCTCGCACAG
ATCTCGCGATACGGCATTCTTTTCGCGGTCAATCAATTAGCGAGAGCAAT
ATCCAAGCCCTCGAAAGCTCACATGGGGGCGGCGAAACACGTACTCCGGT
ACTTGGCCGAGCCCGCTAATTTCTCGAACACCTACAGGCGAGGTGGATTT
AAACTAACGACTTACACTGACGCAAACTGGGGAAGGAATCCCGACAACGG
CAAGTCTACGTCGTCGTATATCGTGATATTCGACAACGGGCCGATCAGCT
TCAAAGTGGAACTCCAGAGTCTGACGGCTCAATCGACTATGAAGGCGGAA
CTCGTGGCAGCTGCCACAGCAATGAAGGAGTCACTCTTCTGCAGAAACAC
GATGATGGAGTTAGGTTTCACAGAGGGATTTCAAAGCGTTCCTGTTTACG
TCGACAGCATATCGGCGTTCCACGTGGCGGGAAACAGGACCTTTAGCTCA
AGGGCGAAACACATCACCCTGAAATACTTTTTCGTTCAAAAGCTAGTGAA
GGAAGGACAGGTCACCACCCACTTCGTCAAGACGGAGCACCAACTCGCCG
ATCTAGGAACGAAATATCTCAAGAAGCATCGTCACCACTTCCTCATCGAG
CTCATCAACGAGTTCAGAGCCTGA
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