mRNA_H-elongata_contig14944.3308.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 493 bits (1270), Expect = 6.670e-166 Identity = 256/505 (50.69%), Postives = 335/505 (66.34%), Query Frame = 1
Query: 22 KEIASLKKHGVYDLVPASSVPAGQRVVGSRWANKFKADNRFKGRLVVLGWAQVPGIHCDGTFAFVCRLKIIRMILAVAAELDYDVLILDAKTAFLNAGVKEEVCVKMAPGYATFDKSGIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYVLEDDKTSNAILTIYVDGIMLLGKNKQL----------LGKLKNQ---LMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELIN 1497
+E+ SL VY LVP S+VP G++ + S+W K KAD FKGR+V GW QVPG+ C T+A VCR++ +RM+ + E + +D TAFL A ++EEV V+ PG+ DK G VMKL KSLYGL QSP NWF TID L IGF +LKSDPCVY L D + LT+YVD ++L G + LG + Q L F+M DLG+ S L M + RDRE +TI Q+ Y + IL R+GM+ TPG GSEI Q D LLDE+E ++YQ I +LMY+AQ+ RY I++A QLAR+++KPSK HM AAKH LRYLA +FS TY++GGFKL T++D+NW NPDNGKSTSSY+ + N P+SF+ LQ LTA STM+AELVA+A AMKE++FC N M ELG + F +PVY D+ + H GNR+FSSR KHI L++FF+++LV EG+++ H+V TE LAD+GTK+ KHR L++LIN
Sbjct: 151 REMKSLSNRKVYKLVPRSAVPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVY-LYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLIN 654
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 508 bits (1307), Expect = 3.150e-161 Identity = 256/501 (51.10%), Postives = 338/501 (67.47%), Query Frame = 1
Query: 1 QWKAATYKEIASLKKHGVYDLVPASSVPAGQRVVGSRWANKFKADNRFKGRLVVLGWAQVPGIHCDGTFAFVCRLKIIRMILAVAAELDYDVLILDAKTAFLNAGVKEEVCVKMAPGYATFDKSGIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYVLEDDKTSNAILTIYVDGIMLLGKNKQLLGKLKNQLMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELINEF 1503
+W AA +E+ SL VY LVP S+VP ++ + S+W K KAD FKGR+V GW QVPG+ C T+A VCR++ +RM+ + E + +D TAFL A ++EEV V+ PG+ DK G VMKL KSLYGL QSP NWF TID L IGF +LKSDPCVY L D + LT+YVD ++L G + + +K +L F+M DLG+ S VL M + RDRE +TI Q+ Y + IL R+G++ TPG GSEI Q D LLDE+E ++YQ I +LMY+AQ+ RY I++A QLAR ++KPSK HM AAKH LRYLA +FS TY++GGFKL T++D+NW NPDNGKSTSSY+ + N P+SF+ LQ LTA STM+AELVA+A AM E++F N M ELGF + F +PVY D+ + H GNR+FSSR KHI L++FF+++LV EG+++ H+V TE LAD+GTK+ KHR L++LIN F
Sbjct: 1165 KWNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVY-LYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 474 bits (1221), Expect = 2.370e-154 Identity = 247/501 (49.30%), Postives = 324/501 (64.67%), Query Frame = 1
Query: 1 QWKAATYKEIASLKKHGVYDLVPASSVPAGQRVVGSRWANKFKADNRFKGRLVVLGWAQVPGIHCDGTFAFVCRLKIIRMILAVAAELDYDVLILDAKTAFLNAGVKEEVCVKMAPGYATFDKSGIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYVLEDDKTSNAILTIYVDGIMLLGKNKQLLGKLKNQLMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELINEF 1503
+W AA +E+ SL VY LVP S VP ++ + S+W K KAD FKGR+V GW QVPG+ C T+A VCR++ +RM+ + + + LI D D G VMKL KSLYGL QSP NWF TID L IGF +LKSDPCVY L D + LT+YVD ++L G + + +K +L F+M DLG+ S VL M + RDRE +TI Q+ Y + IL R+GM+ TPG GSEI Q D LLDE+E ++YQ I +LMY+AQ+ RY I++A QLAR ++KPSK HM AAKH LRYLA +FS TY++GGFKL T++D+NW NPDNGKSTSSY+ + N P+SF+ LQ LTA STM+AELVA+A AMKE++FC N M ELGF + F +PVY D+ + H GNR+FSSR KHI L++FF+++LV EG+++ H+V+TE LAD+GTK+ HR L++LIN F
Sbjct: 523 KWNAAAEREMKSLSDRKVYKLVPRSGVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVDFN---LIFDQ-----------------------MDDGG-DMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVY-LYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 459 bits (1180), Expect = 6.790e-151 Identity = 242/500 (48.40%), Postives = 317/500 (63.40%), Query Frame = 1
Query: 4 WKAATYKEIASLKKHGVYDLVPASSVPAGQRVVGSRWANKFKADNRFKGRLVVLGWAQVPGIHCDGTFAFVCRLKIIRMILAVAAELDYDVLILDAKTAFLNAGVKEEVCVKMAPGYATFDKSGIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYVLEDDKTSNAILTIYVDGIMLLGKNKQLLGKLKNQLMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELINEF 1503
WKAAT KEI SL+ VY LVP + VP G V+GS+W K K +N K RLV GW QVPG C GTFA VCRL+ IRM+ A+AAE D DV+ LD KTAFL A ++E V V+MAPGY + + VMKL+KSL GL QSP++W TID L IGF LKSD CVY+ + + T +LT+YVD ++++ G NYT IL R+GM C T G G E+ +Q + LL+ + KQRYQ+I ++MYLAQ++RY I++ +Q ARA+S PSK HMGAAKH+LRYL+ +FS TY+RGGF LT ++AN G N DNGKS SSYI++ P S K LQSLTA ST++AELVA+A AMKE +FC N M ELGF F S P+++DS + +V GN+TFS KH+ L++F+++K+VKEG+++ H++ TE LAD+GT+YL K RH +LI+ I F
Sbjct: 317 WKAATDKEIKSLQDLKVYKLVPRTDVPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTV-VVLTLYVDDLLII---------------------------------------RGGAHHQPGNYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLIDKIKNF 776
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 428 bits (1100), Expect = 2.680e-143 Identity = 217/408 (53.19%), Postives = 282/408 (69.12%), Query Frame = 1
Query: 283 LDAKTAFLNAGVKEEVCVKMAPGYATFDKS-GIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYVLEDDKTSNAILTIYVDGIMLLGKNKQLLGKLKNQLMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELINEF 1503
+D TAFL A ++EEV V+ PG+ DK G VMKL KSLYGL QSP NWF TID + IGF +LKSDPCVY L D + LT+YVD ++L G + + +K +L F+M DLG+ S VL M + RDRE +TI Q+ Y + IL R+GM+ TPG GSEI Q D LLDE+E ++YQ I +LMY+AQ+ RY I++A QLAR ++KPSK HM AAKH LRYLA +FS TY++GGFKL T++D+NW NPDNGKSTSSY+ + N P+SF+ LQ LTA STM+AELVA+A AMKE++FC N M ELGF + F +PVY D+ + H GNR+FSSR KHI L++FF+++LV EG+++ H+ TE LAD+GTK+ KHR L++LIN F
Sbjct: 29 MDVSTAFLYADIQEEVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVY-LYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE) HSP 1 Score: 424 bits (1090), Expect = 1.630e-136 Identity = 223/502 (44.42%), Postives = 326/502 (64.94%), Query Frame = 1
Query: 1 QWKAATYKEIASLKKHGVYDLVPASSVPAGQRVVGSRWANKFKADNRFKGRLVVLGWAQVPGIHCDGTFAFVCRLKIIRMILAVAAELDYDVLILDAKTAFLNAGVKEEVCVKMAPGYATFDKS-GIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYVLEDDKTSNAILTIYVDGIMLLGKNKQLLGKLKNQLMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELINEF 1503
+WK A KE+ +L+KH VY+LVP SSVP G++++G+++ K K D RFK RLVV G Q PG ++A VCR+ IRM A+ ++ + LD AFLNA +V V+ APG + + + G P V KL++SLYGL QSP W T+D+ L+ G++ +SDPCVYV ILT+YVD I++ G ++QL+ + K +L D FEM D+G+V ++L ++V RD E G + I Q++Y +L R+GM N TPG G+EI Q D++L +K+ YQS+T +++YLAQ +R+ + +A QL++A S P++ +M AAKHVLRYL Y+RG F+L +TD+++G NPDNG+ST+ Y+ G IS+ + Q+LTAQST++AE+ A + + +E+++ N M EL F + F SVP+ DS A VAGN S R KH+TL+YFF+++LV GQ+T H +EHQLAD+ TKYL KHR +I+ I +F
Sbjct: 356 EWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNII-VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDF 855
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE) HSP 1 Score: 414 bits (1063), Expect = 2.570e-134 Identity = 219/502 (43.63%), Postives = 322/502 (64.14%), Query Frame = 1
Query: 1 QWKAATYKEIASLKKHGVYDLVPASSVPAGQRVVGSRWANKFKADNRFKGRLVVLGWAQVPGIHCDGTFAFVCRLKIIRMILAVAAELDYDVLILDAKTAFLNAGVKEEVCVKMAPGYATFDKS-GIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYVLEDDKTSNAILTIYVDGIMLLGKNKQLLGKLKNQLMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELINEF 1503
+WK A KE+ +L+KH VY LVP SSVP G++++G+++ K D RFK RLVV G Q PG ++A VCR+ IRM A+ ++ + LD AFLNA +V V+ APG + + + G P V KL++SLYGL QS W T+D+ L+ +G++ +SDPCVYV ILT+YVD I++ G ++QL+ + K +L D FEM D+G+V ++L ++V RD E G + I Q++Y +L R+GM N TPG G+EI Q D++L +K+ YQS+ +++YLAQ +R+ + +A QL++A S P++ +M AAKHVLRYL Y+RG F+L +TD+++G NPDNG+ST+ Y+ G IS+ + Q+LTAQST++AE+ A + + +E+++ N M EL F + F SVP+ DS A VAGN S R KH+ L+YFF+++LV GQ+T H +EHQLAD+ TKYL KHR +I+ I +F
Sbjct: 200 EWKGACSKEMYNLRKHNVYILVPLSSVPEGEKILGTKFVFKKTLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNII-VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDF 699
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE) HSP 1 Score: 402 bits (1034), Expect = 1.070e-132 Identity = 215/491 (43.79%), Postives = 315/491 (64.15%), Query Frame = 1
Query: 34 SLKKHGVYDLVPASSVPAGQRVVGSRWANKFKADNRFKGRLVVLGWAQVPGIHCDGTFAFVCRLKIIRMILAVAAELDYDVLILDAKTAFLNAGVKEEVCVKMAPGYATFDKS-GIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYVLEDDKTSNAILTIYVDGIMLLGKNKQLLGKLKNQLMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELINEF 1503
+L+KH VY+LVP SSVP G++++G+++ K K D RFK RLVV G Q PG ++A VCR+ IRM A+ ++ + LD AFLNA V V+ APG + + + G P V KL++SLYGL QSP W T+D+ L+ G++ +SDPCVYV ILT+YVD I++ G ++QL+ + K +L D FEM D+G+V ++L ++V RD E G + I Q++Y L R+GM N T G G+EI Q D++L +K+ YQS+T +++YLAQ +++ + +A QL++A S P++ +M AAKHVLRYL Y+RG F+L +TD+++G NPDNG+ST+ Y+ G IS+ + Q+LTAQST++AE+ A + + +E+++ N M EL F + F SVP+ DS A VAGN S R KH+ L+YFF+++LV GQ+T H +EHQLAD+ TKYL KHR +I+ I +F
Sbjct: 3 NLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNII-VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDF 491
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 407 bits (1045), Expect = 3.190e-131 Identity = 221/505 (43.76%), Postives = 321/505 (63.56%), Query Frame = 1
Query: 1 QWKAATYKEIASLKKHGVYDLVPASSVPAGQRVVGSRWANKFKADNRFKGRLVVLGWAQVPGIHCDGTFAFVCRLKIIRMILAVAAELDYDVLILDAKTAFLNAGVKEEVCVKMAPGYATFDKS-GIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYV-LEDDKTSNAILTIYVDGIMLLGKNKQLLGKLKNQLMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELINEFRA 1509
QWK+A E+ +L KH V+ V S VP + + +R+ K KAD+RFK RLV G Q G H +A V RL IRM+ A+A E ++V LD AFLNA +V V+ APG D + G V KL+KSLYGL QSP W I+D L G++ +SDPCVY+ + D+ + IL IYVD I++ G NK+++ + K +LMD FEM D+G+V +V+ + V RD E+G + I Q Y DIL RYGM N TPG G E+ EQ D+LL ++KQR+Q+IT +L+YLAQ +RY + +AV+QL RA + P++ HM AAKH+LRYL + Y++G F+L+ +TD+++G NPDNG+ST+ Y+ G IS+ + Q+L AQ+T++AEL A + + +E+++ N M E+GF + F+SVP+ DS A VA N FSSR KHI L++FF+++L K ++T H + LAD+ TK+L K R +++LI +++
Sbjct: 233 QWKSAIDTEMGNLAKHKVFKKVRISLVPKDEDIFDTRFVFKIKADSRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELT--ILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGF-KTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLIKDYKC 734
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE) HSP 1 Score: 388 bits (997), Expect = 6.430e-124 Identity = 212/503 (42.15%), Postives = 293/503 (58.25%), Query Frame = 1
Query: 1 QWKAATYKEIASLKKHGVYDLVPASSVPAGQRVVGSRWANKFKADNRFKGRLVVLGWAQVPGIHCDGTFAFVCRLKIIRMILAVAAELDYDVLILDAKTAFLNAGVKEEVCVKMAPGYATFDKSGIPFVMKLKKSLYGLRQSPKNWFGTIDDHLSTIGFRSLKSDPCVYVLEDDKTSNAILTIYVDGIMLLGKNKQLLGKLKNQLMDHFEMRDLGDVSKVLDMNVTRDRENGMITIDQKNYTEDIL*RYGMTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYGILFAVNQLARAISKPSKAHMGAAKHVLRYLAEPANFSNTYRRGGFKLTTYTDANWGRNPDNGKSTSSYIVIFDNGPISFKVELQSLTAQSTMKAELVAAATAMKESLFCRNTMMELGFTEGFQSVPVYVDSISAFHVAGNRTFSSRAKHITLKYFFVQKLVKEGQVTTHFVKTEHQLADLGTKYLKKHRHHFLIELINEFRA 1509
QW AA +EIA LK VY LV S+VP G+R + RW + +R++L + E D ++ +D AFL A ++E+V V+ PG+ ++G VM L+KSLY L QSP NWF TID L +IGF LK DPCVY + D S LT+ VD ++L G N L S + M + RDRE G ++I ++ Y++ IL R+GM+ C TPG+G Q + LL+++E +RYQ I L+YL+QI RY I++A +QLAR ++KPSK HMGAAK RYLA F Y+RGGFKLT +TD+NWG NPDNGKSTSS++ + + P++FK LQSLT QSTM+ ELVAAA A+KE++FC N + ELGF + VP+Y D+ + H GNR++SS KHI L++FF+++LV EG++ H+V + AD+GTK+L K R L+ +I F
Sbjct: 270 QWIAAAEREIADLKDRKVYKLVLRSTVPRGRRRINFRWVTQS-----------------------------------VRVLLCITVEFDLIIVQMDVTAAFLYADIQEDVYVEQPPGFEVKGENGEDLVMLLQKSLYWLAQSPGNWFHTIDPFLISIGFVPLKPDPCVYFYDHDG-SQMYLTLSVDDLLLAGNNSDALSI----------------ASLISGMEIKRDRERGTLSISREAYSKSILDRFGMSACKPTSTPGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNFNV 720 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14944.3308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14944.3308.1 >prot_H-elongata_contig14944.3308.1 ID=prot_H-elongata_contig14944.3308.1|Name=mRNA_H-elongata_contig14944.3308.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp MTHCNVAFTPGVGSEIFFEQSVDRLLDEQEKQRYQSITDALMYLAQISRYback to top mRNA from alignment at H-elongata_contig14944:416..1927- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14944.3308.1 ID=mRNA_H-elongata_contig14944.3308.1|Name=mRNA_H-elongata_contig14944.3308.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1512bp|location=Sequence derived from alignment at H-elongata_contig14944:416..1927- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14944:416..1927- >mRNA_H-elongata_contig14944.3308.1 ID=mRNA_H-elongata_contig14944.3308.1|Name=mRNA_H-elongata_contig14944.3308.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig14944:416..1927- (Himanthalia elongata Himel1 dioecious)back to top |