mRNA_H-elongata_contig14897.3285.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14897.3285.1
Unique NamemRNA_H-elongata_contig14897.3285.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A0Y0JAL7_9PHAE (PsbV n=10 Tax=Fucales TaxID=3009 RepID=A0A0Y0JAL7_9PHAE)

HSP 1 Score: 300 bits (768), Expect = 1.020e-102
Identity = 150/161 (93.17%), Postives = 156/161 (96.89%), Query Frame = 1
Query:    1 MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
            MFKKF ITF I S++NL + SVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMK+PTT+DGLESIAEIHPSIKSANIFTRMRSLDENDL+DIAGHILLQPKIVSEKWGGGKIYY
Sbjct:    1 MFKKFFITFTIVSLINLTNLSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKDPTTFDGLESIAEIHPSIKSANIFTRMRSLDENDLIDIAGHILLQPKIVSEKWGGGKIYY 161          
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A0R6M468_UNDPI (Cytochrome c-550 n=36 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M468_UNDPI)

HSP 1 Score: 288 bits (736), Expect = 7.690e-98
Identity = 145/161 (90.06%), Postives = 150/161 (93.17%), Query Frame = 1
Query:    1 MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
            MFKKF ++  IA +     SSVLAI+LDEATRTIPVT+DGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLD EALSLATPARNNIN LVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY
Sbjct:    1 MFKKFFLSLTIACLATSVGSSVLAIDLDEATRTIPVTSDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDSEALSLATPARNNINGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161          
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: D1J771_ECTSI (Cytochrome c-550 n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J771_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 8.980e-97
Identity = 142/161 (88.20%), Postives = 151/161 (93.79%), Query Frame = 1
Query:    1 MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
            MFKKF  + +I S++NL +SSVLAIELDEATRTIP T+DGKT VLTPEQVKRGKRLFNSSCGQCHVGG+TKTNPNLGLD EALSLATP+RNNI  LVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKI+SEKWGGGKIYY
Sbjct:    1 MFKKFFTSLIIVSLLNLGTSSVLAIELDEATRTIPATSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNLGLDTEALSLATPSRNNITGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKILSEKWGGGKIYY 161          
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A8F0FAG4_9PHAE (Photosystem II protein V n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FAG4_9PHAE)

HSP 1 Score: 284 bits (726), Expect = 2.570e-96
Identity = 141/161 (87.58%), Postives = 151/161 (93.79%), Query Frame = 1
Query:    1 MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
            MFKKF I+  IA + N   SSVLAI+LDEATRTIPVT+DGKTTVLTPEQVKRGKRLFNSSCGQCHVGG+TKTNPNLGLDPEALSLATP+RNNIN LV+YMK+PTTYDGLESIAEIHPSIKSANIFTRMR+LDE DLVDIAGHILLQPKI+SEKWGGGKIYY
Sbjct:    1 MFKKFFISLTIACLANSVGSSVLAIDLDEATRTIPVTSDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLATPSRNNINGLVNYMKDPTTYDGLESIAEIHPSIKSANIFTRMRALDEKDLVDIAGHILLQPKILSEKWGGGKIYY 161          
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A1I9LVF9_9PHAE (Cytochrome c-550 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVF9_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 6.060e-95
Identity = 140/161 (86.96%), Postives = 148/161 (91.93%), Query Frame = 1
Query:    1 MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
            M KK   + +IAS++NL S S  AIELDEATRTIPVT+DGKT VLTPEQVKRGKRLFNSSCGQCHVGG+TKTNPN+GLD EALSLATP+RNNI  LVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY
Sbjct:    1 MLKKVFTSLIIASLLNLISCSAFAIELDEATRTIPVTSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNVGLDTEALSLATPSRNNITGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161          
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A8F0F791_9PHAE (Photosystem II protein V n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F791_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 2.760e-91
Identity = 133/161 (82.61%), Postives = 146/161 (90.68%), Query Frame = 1
Query:    1 MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
            M +K  I F++    N+F+ SV AIELDEATRTIPV   GKTTVLTPEQ+KRGKRLFNSSCGQCHVGG+TKTNPNLGLDPEALSLA+PARNNI+ LVDYMKNPTTYDGLESIAEIHPSIKSANIF+RMRSLD++DL DIAGHIL+QPKIVSEKWGGGKIYY
Sbjct:    1 MLRKIIIGFLVICFSNIFNPSVFAIELDEATRTIPVNGKGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLVDYMKNPTTYDGLESIAEIHPSIKSANIFSRMRSLDDDDLFDIAGHILIQPKIVSEKWGGGKIYY 161          
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A6B7EXK3_9PHAE (Photosystem II cytochrome c550 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EXK3_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 1.240e-90
Identity = 134/143 (93.71%), Postives = 137/143 (95.80%), Query Frame = 1
Query:   55 SSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
            SS  LAIELDEATRTIP T+DGKT VLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLD EALSLATP+RNNI+ LVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY
Sbjct:   22 SSKALAIELDEATRTIPATSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDTEALSLATPSRNNISGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 164          
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A8E6D6I5_9PHAE (Cytochrome c-550 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6I5_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 6.410e-85
Identity = 131/163 (80.37%), Postives = 144/163 (88.34%), Query Frame = 1
Query:    1 MFKKFCITFVIASIVN--LFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
            M+K+  I  ++A +++  L  S+  AIELDEATRTI V + GKTT+LTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPAR+NI  LVDYMKNPTTYDGLESIAEIHPSIKSA+IF RMRSL E+DLV IAGHILLQPKIVSEKWGGGKIYY
Sbjct:    7 MWKRITIRLLMACLLSSSLLVSAAFAIELDEATRTISVDSTGKTTILTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARDNITGLVDYMKNPTTYDGLESIAEIHPSIKSADIFPRMRSLSEDDLVAIAGHILLQPKIVSEKWGGGKIYY 169          
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A2I4Q2C0_9PHAE (Cytochrome c-550 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2C0_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 2.560e-83
Identity = 128/157 (81.53%), Postives = 137/157 (87.26%), Query Frame = 1
Query:   13 FCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
            FC+     S+ N F      IELDEATRTI V  +GKTTVLT EQ+KRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNI+ LVDYMK PTTYDGLESIAEIHPSIKSANIF+RMRSLD++DL DIAGHIL+QPKIVSEKWGGGKIYY
Sbjct:   13 FCLFSSFISVPNTFG-----IELDEATRTIKVNKEGKTTVLTAEQLKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNIDGLVDYMKAPTTYDGLESIAEIHPSIKSANIFSRMRSLDDDDLFDIAGHILIQPKIVSEKWGGGKIYY 164          
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A7S6ZPA0_9STRA (Cytochrome c-550 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPA0_9STRA)

HSP 1 Score: 246 bits (627), Expect = 3.370e-81
Identity = 122/163 (74.85%), Postives = 139/163 (85.28%), Query Frame = 1
Query:    1 MFKKFCITFVIASIV--NLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
            MFKKF   F+ + ++  N+      A+ELDEATRTIP+ N GKTT+L+ EQVKRGKRLFN SCGQCHVGG+TKTNPNLGLD EALSLATP+RN+I  LVDYMKNPTTYDGLESIAEIHPSIKSA+IF RMRSL E DLV IAGHILLQPK+++EKWGGGKIY+
Sbjct:    1 MFKKFFSLFLASFLLFSNILGPVAFAVELDEATRTIPLDNTGKTTILSAEQVKRGKRLFNVSCGQCHVGGITKTNPNLGLDTEALSLATPSRNSITGLVDYMKNPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVSIAGHILLQPKVIAEKWGGGKIYF 163          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0Y0JAL7_9PHAE1.020e-10293.17PsbV n=10 Tax=Fucales TaxID=3009 RepID=A0A0Y0JAL7_... [more]
A0A0R6M468_UNDPI7.690e-9890.06Cytochrome c-550 n=36 Tax=Phaeophyceae TaxID=2870 ... [more]
D1J771_ECTSI8.980e-9788.20Cytochrome c-550 n=6 Tax=Ectocarpales TaxID=2877 R... [more]
A0A8F0FAG4_9PHAE2.570e-9687.58Photosystem II protein V n=2 Tax=Ecklonia TaxID=10... [more]
A0A1I9LVF9_9PHAE6.060e-9586.96Cytochrome c-550 n=1 Tax=Pleurocladia lacustris Ta... [more]
A0A8F0F791_9PHAE2.760e-9182.61Photosystem II protein V n=1 Tax=Protohalopteris s... [more]
A0A6B7EXK3_9PHAE1.240e-9093.71Photosystem II cytochrome c550 n=1 Tax=Cladosiphon... [more]
A0A8E6D6I5_9PHAE6.410e-8580.37Cytochrome c-550 n=1 Tax=Ishige okamurae TaxID=233... [more]
A0A2I4Q2C0_9PHAE2.560e-8381.53Cytochrome c-550 n=1 Tax=Dictyopteris divaricata T... [more]
A0A7S6ZPA0_9STRA3.370e-8174.85Cytochrome c-550 n=1 Tax=Schizocladia ischiensis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14897contigH-elongata_contig14897:6717..7202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score287.3
Seed ortholog evalue4.3e-75
Seed eggNOG ortholog2880.D1J771
Preferred namepsbV
KEGG koko:K02720
KEGG Pathwayko00195,ko01100,map00195,map01100
EggNOG free text desc.photosynthesis
EggNOG OGs2CXNY@1,2RYSJ@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorysignal peptide
Exons1
Model size486
Cds size486
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929881.7874854-CDS-H-elongata_contig14897:6716..72021622929881.7874854-CDS-H-elongata_contig14897:6716..7202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14897 6717..7202 +
1691679193.9449074-CDS-H-elongata_contig14897:6716..72021691679193.9449074-CDS-H-elongata_contig14897:6716..7202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14897 6717..7202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14897.3285.1prot_H-elongata_contig14897.3285.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14897 6717..7202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14897.3285.1

>prot_H-elongata_contig14897.3285.1 ID=prot_H-elongata_contig14897.3285.1|Name=mRNA_H-elongata_contig14897.3285.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQV
KRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYM
KNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIV
SEKWGGGKIYY*
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mRNA from alignment at H-elongata_contig14897:6717..7202+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14897.3285.1 ID=mRNA_H-elongata_contig14897.3285.1|Name=mRNA_H-elongata_contig14897.3285.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=486bp|location=Sequence derived from alignment at H-elongata_contig14897:6717..7202+ (Himanthalia elongata Himel1 dioecious)
ATGTTCAAAAAATTTTGTATAACTTTTGTTATAGCATCTATAGTAAATTT ATTTAGCTCATCAGTTTTAGCTATTGAGTTAGATGAAGCAACAAGAACAA TTCCAGTAACTAATGATGGAAAAACTACAGTATTAACACCTGAACAAGTT AAAAGAGGAAAACGTTTATTTAATTCGAGTTGTGGGCAATGTCATGTTGG AGGTGTTACAAAAACAAATCCTAATCTAGGACTTGACCCAGAAGCTTTAA GCTTGGCTACACCAGCGCGTAATAATATCAATGCATTAGTGGATTATATG AAAAATCCAACAACTTATGATGGTTTAGAATCAATTGCTGAGATTCATCC AAGTATTAAAAGTGCGAATATTTTTACACGGATGAGATCTTTAGATGAAA ATGATTTAGTAGATATTGCAGGACATATTTTATTGCAACCAAAAATTGTC TCTGAAAAATGGGGTGGTGGAAAAATTTATTATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig14897:6717..7202+

>mRNA_H-elongata_contig14897.3285.1 ID=mRNA_H-elongata_contig14897.3285.1|Name=mRNA_H-elongata_contig14897.3285.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig14897:6717..7202+ (Himanthalia elongata Himel1 dioecious)
ATGTTCAAAAAATTTTGTATAACTTTTGTTATAGCATCTATAGTAAATTT
ATTTAGCTCATCAGTTTTAGCTATTGAGTTAGATGAAGCAACAAGAACAA
TTCCAGTAACTAATGATGGAAAAACTACAGTATTAACACCTGAACAAGTT
AAAAGAGGAAAACGTTTATTTAATTCGAGTTGTGGGCAATGTCATGTTGG
AGGTGTTACAAAAACAAATCCTAATCTAGGACTTGACCCAGAAGCTTTAA
GCTTGGCTACACCAGCGCGTAATAATATCAATGCATTAGTGGATTATATG
AAAAATCCAACAACTTATGATGGTTTAGAATCAATTGCTGAGATTCATCC
AAGTATTAAAAGTGCGAATATTTTTACACGGATGAGATCTTTAGATGAAA
ATGATTTAGTAGATATTGCAGGACATATTTTATTGCAACCAAAAATTGTC
TCTGAAAAATGGGGTGGTGGAAAAATTTATTATTAAATGTTCAAAAAATT
TTGTATAACTTTTGTTATAGCATCTATAGTAAATTTATTTAGCTCATCAG
TTTTAGCTATTGAGTTAGATGAAGCAACAAGAACAATTCCAGTAACTAAT
GATGGAAAAACTACAGTATTAACACCTGAACAAGTTAAAAGAGGAAAACG
TTTATTTAATTCGAGTTGTGGGCAATGTCATGTTGGAGGTGTTACAAAAA
CAAATCCTAATCTAGGACTTGACCCAGAAGCTTTAAGCTTGGCTACACCA
GCGCGTAATAATATCAATGCATTAGTGGATTATATGAAAAATCCAACAAC
TTATGATGGTTTAGAATCAATTGCTGAGATTCATCCAAGTATTAAAAGTG
CGAATATTTTTACACGGATGAGATCTTTAGATGAAAATGATTTAGTAGAT
ATTGCAGGACATATTTTATTGCAACCAAAAATTGTCTCTGAAAAATGGGG
TGGTGGAAAAATTTATTATTAA
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