mRNA_H-elongata_contig14897.3285.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A0Y0JAL7_9PHAE (PsbV n=10 Tax=Fucales TaxID=3009 RepID=A0A0Y0JAL7_9PHAE) HSP 1 Score: 300 bits (768), Expect = 1.020e-102 Identity = 150/161 (93.17%), Postives = 156/161 (96.89%), Query Frame = 1
Query: 1 MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
MFKKF ITF I S++NL + SVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMK+PTT+DGLESIAEIHPSIKSANIFTRMRSLDENDL+DIAGHILLQPKIVSEKWGGGKIYY
Sbjct: 1 MFKKFFITFTIVSLINLTNLSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKDPTTFDGLESIAEIHPSIKSANIFTRMRSLDENDLIDIAGHILLQPKIVSEKWGGGKIYY 161
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A0R6M468_UNDPI (Cytochrome c-550 n=36 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M468_UNDPI) HSP 1 Score: 288 bits (736), Expect = 7.690e-98 Identity = 145/161 (90.06%), Postives = 150/161 (93.17%), Query Frame = 1
Query: 1 MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
MFKKF ++ IA + SSVLAI+LDEATRTIPVT+DGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLD EALSLATPARNNIN LVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY
Sbjct: 1 MFKKFFLSLTIACLATSVGSSVLAIDLDEATRTIPVTSDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDSEALSLATPARNNINGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: D1J771_ECTSI (Cytochrome c-550 n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J771_ECTSI) HSP 1 Score: 285 bits (729), Expect = 8.980e-97 Identity = 142/161 (88.20%), Postives = 151/161 (93.79%), Query Frame = 1
Query: 1 MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
MFKKF + +I S++NL +SSVLAIELDEATRTIP T+DGKT VLTPEQVKRGKRLFNSSCGQCHVGG+TKTNPNLGLD EALSLATP+RNNI LVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKI+SEKWGGGKIYY
Sbjct: 1 MFKKFFTSLIIVSLLNLGTSSVLAIELDEATRTIPATSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNLGLDTEALSLATPSRNNITGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKILSEKWGGGKIYY 161
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A8F0FAG4_9PHAE (Photosystem II protein V n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FAG4_9PHAE) HSP 1 Score: 284 bits (726), Expect = 2.570e-96 Identity = 141/161 (87.58%), Postives = 151/161 (93.79%), Query Frame = 1
Query: 1 MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
MFKKF I+ IA + N SSVLAI+LDEATRTIPVT+DGKTTVLTPEQVKRGKRLFNSSCGQCHVGG+TKTNPNLGLDPEALSLATP+RNNIN LV+YMK+PTTYDGLESIAEIHPSIKSANIFTRMR+LDE DLVDIAGHILLQPKI+SEKWGGGKIYY
Sbjct: 1 MFKKFFISLTIACLANSVGSSVLAIDLDEATRTIPVTSDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLATPSRNNINGLVNYMKDPTTYDGLESIAEIHPSIKSANIFTRMRALDEKDLVDIAGHILLQPKILSEKWGGGKIYY 161
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A1I9LVF9_9PHAE (Cytochrome c-550 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVF9_9PHAE) HSP 1 Score: 280 bits (717), Expect = 6.060e-95 Identity = 140/161 (86.96%), Postives = 148/161 (91.93%), Query Frame = 1
Query: 1 MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
M KK + +IAS++NL S S AIELDEATRTIPVT+DGKT VLTPEQVKRGKRLFNSSCGQCHVGG+TKTNPN+GLD EALSLATP+RNNI LVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY
Sbjct: 1 MLKKVFTSLIIASLLNLISCSAFAIELDEATRTIPVTSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNVGLDTEALSLATPSRNNITGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 161
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A8F0F791_9PHAE (Photosystem II protein V n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F791_9PHAE) HSP 1 Score: 271 bits (693), Expect = 2.760e-91 Identity = 133/161 (82.61%), Postives = 146/161 (90.68%), Query Frame = 1
Query: 1 MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
M +K I F++ N+F+ SV AIELDEATRTIPV GKTTVLTPEQ+KRGKRLFNSSCGQCHVGG+TKTNPNLGLDPEALSLA+PARNNI+ LVDYMKNPTTYDGLESIAEIHPSIKSANIF+RMRSLD++DL DIAGHIL+QPKIVSEKWGGGKIYY
Sbjct: 1 MLRKIIIGFLVICFSNIFNPSVFAIELDEATRTIPVNGKGKTTVLTPEQLKRGKRLFNSSCGQCHVGGITKTNPNLGLDPEALSLASPARNNIDGLVDYMKNPTTYDGLESIAEIHPSIKSANIFSRMRSLDDDDLFDIAGHILIQPKIVSEKWGGGKIYY 161
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A6B7EXK3_9PHAE (Photosystem II cytochrome c550 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EXK3_9PHAE) HSP 1 Score: 270 bits (689), Expect = 1.240e-90 Identity = 134/143 (93.71%), Postives = 137/143 (95.80%), Query Frame = 1
Query: 55 SSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
SS LAIELDEATRTIP T+DGKT VLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLD EALSLATP+RNNI+ LVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY
Sbjct: 22 SSKALAIELDEATRTIPATSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDTEALSLATPSRNNISGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 164
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A8E6D6I5_9PHAE (Cytochrome c-550 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6I5_9PHAE) HSP 1 Score: 255 bits (652), Expect = 6.410e-85 Identity = 131/163 (80.37%), Postives = 144/163 (88.34%), Query Frame = 1
Query: 1 MFKKFCITFVIASIVN--LFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
M+K+ I ++A +++ L S+ AIELDEATRTI V + GKTT+LTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPAR+NI LVDYMKNPTTYDGLESIAEIHPSIKSA+IF RMRSL E+DLV IAGHILLQPKIVSEKWGGGKIYY
Sbjct: 7 MWKRITIRLLMACLLSSSLLVSAAFAIELDEATRTISVDSTGKTTILTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARDNITGLVDYMKNPTTYDGLESIAEIHPSIKSADIFPRMRSLSEDDLVAIAGHILLQPKIVSEKWGGGKIYY 169
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A2I4Q2C0_9PHAE (Cytochrome c-550 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2C0_9PHAE) HSP 1 Score: 251 bits (641), Expect = 2.560e-83 Identity = 128/157 (81.53%), Postives = 137/157 (87.26%), Query Frame = 1
Query: 13 FCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
FC+ S+ N F IELDEATRTI V +GKTTVLT EQ+KRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNI+ LVDYMK PTTYDGLESIAEIHPSIKSANIF+RMRSLD++DL DIAGHIL+QPKIVSEKWGGGKIYY
Sbjct: 13 FCLFSSFISVPNTFG-----IELDEATRTIKVNKEGKTTVLTAEQLKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNIDGLVDYMKAPTTYDGLESIAEIHPSIKSANIFSRMRSLDDDDLFDIAGHILIQPKIVSEKWGGGKIYY 164
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Match: A0A7S6ZPA0_9STRA (Cytochrome c-550 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPA0_9STRA) HSP 1 Score: 246 bits (627), Expect = 3.370e-81 Identity = 122/163 (74.85%), Postives = 139/163 (85.28%), Query Frame = 1
Query: 1 MFKKFCITFVIASIV--NLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARNNINALVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKIVSEKWGGGKIYY 483
MFKKF F+ + ++ N+ A+ELDEATRTIP+ N GKTT+L+ EQVKRGKRLFN SCGQCHVGG+TKTNPNLGLD EALSLATP+RN+I LVDYMKNPTTYDGLESIAEIHPSIKSA+IF RMRSL E DLV IAGHILLQPK+++EKWGGGKIY+
Sbjct: 1 MFKKFFSLFLASFLLFSNILGPVAFAVELDEATRTIPLDNTGKTTILSAEQVKRGKRLFNVSCGQCHVGGITKTNPNLGLDTEALSLATPSRNSITGLVDYMKNPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVSIAGHILLQPKVIAEKWGGGKIYF 163 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14897.3285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14897.3285.1 >prot_H-elongata_contig14897.3285.1 ID=prot_H-elongata_contig14897.3285.1|Name=mRNA_H-elongata_contig14897.3285.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp MFKKFCITFVIASIVNLFSSSVLAIELDEATRTIPVTNDGKTTVLTPEQVback to top mRNA from alignment at H-elongata_contig14897:6717..7202+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14897.3285.1 ID=mRNA_H-elongata_contig14897.3285.1|Name=mRNA_H-elongata_contig14897.3285.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=486bp|location=Sequence derived from alignment at H-elongata_contig14897:6717..7202+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14897:6717..7202+ >mRNA_H-elongata_contig14897.3285.1 ID=mRNA_H-elongata_contig14897.3285.1|Name=mRNA_H-elongata_contig14897.3285.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig14897:6717..7202+ (Himanthalia elongata Himel1 dioecious)back to top |