mRNA_H-elongata_contig14897.3281.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14897.3281.1
Unique NamemRNA_H-elongata_contig14897.3281.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: A0A2R4QPS9_9PHAE (Hypothetical chloroplast protein ycf47 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPS9_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.140e-29
Identity = 59/72 (81.94%), Postives = 63/72 (87.50%), Query Frame = 1
Query:   25 KFISIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKNYF 240
            KF+SI++I INIILI IILIRSPNEQSLQENL PFKFFESSSKAE F DN IQIL VLYFSLA+ Y IKNYF
Sbjct:    5 KFLSIISIGINIILIFIILIRSPNEQSLQENLDPFKFFESSSKAEIFIDNLIQILVVLYFSLALLYNIKNYF 76          
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: A0A141BSB1_9PHAE (Probable protein-export membrane protein SecG n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSB1_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.660e-25
Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 1
Query:   22 MKFISIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKNY 237
            MKF SI++I +N  L+LIILIRSPNEQSLQENL PFK FESSSKAE   DN I+ILT++YFS+A+ Y IKNY
Sbjct:    1 MKFFSIISIIVNFFLVLIILIRSPNEQSLQENLDPFKIFESSSKAENSIDNLIKILTIIYFSIALAYNIKNY 72          
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: A0A5A4MI59_9PHAE (Uncharacterized protein n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MI59_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.090e-22
Identity = 47/73 (64.38%), Postives = 60/73 (82.19%), Query Frame = 1
Query:   22 MKFISIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKNYF 240
            M    +++I +NI+LIL+IL+RSPNEQSLQENL+PFK FESSS+AEK  D  IQ+LTVLYF LA+ Y I++YF
Sbjct:    4 MTIFGVLSILLNILLILVILVRSPNEQSLQENLAPFKLFESSSRAEKSIDKFIQLLTVLYFLLALIYVIQSYF 76          
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: A0A0R6LUQ0_UNDPI (Probable protein-export membrane protein SecG n=23 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUQ0_UNDPI)

HSP 1 Score: 90.9 bits (224), Expect = 2.200e-22
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 1
Query:   34 SIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKNYF 240
            SI++I +N  L+LIIL+RSPNEQSLQENL PFK FESSS+AEK  D  IQILT+LYF LA+ YTI+ YF
Sbjct:    8 SILSIILNFSLVLIILVRSPNEQSLQENLDPFKLFESSSRAEKSIDKLIQILTILYFVLALVYTIQRYF 76          
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: D1J765_ECTSI (Uncharacterized protein ycf47 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J765_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.200e-22
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 1
Query:   34 SIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKNYF 240
            SI++I +NI+LI IILIRSPNEQSLQENL+PFKFFESSS+AEK  D  IQILT+ YF +A+ Y I++YF
Sbjct:    8 SIISILLNILLISIILIRSPNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTIFYFIIALIYIIQSYF 76          
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: A0A6B7EUY5_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EUY5_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.670e-21
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   22 MKFISIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKNYF 240
            M F S+ +I +NI+LILIILIRSPNEQSLQENL PFK FESS +AE   D  +QILT+LYF++AI Y I +YF
Sbjct:    1 MTFFSLFSILLNILLILIILIRSPNEQSLQENLIPFKLFESSRRAETSIDKLLQILTILYFTIAICYVIGSYF 73          
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: A0A344PF79_9PHAE (Uncharacterized protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PF79_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.560e-21
Identity = 47/73 (64.38%), Postives = 59/73 (80.82%), Query Frame = 1
Query:   22 MKFISIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKNYF 240
            M    I++I +NI+LILIILIRSPNEQSLQENL+PF+ FESSS+AEK  D  IQ+LT+ YF LA+ Y I++YF
Sbjct:    4 MTLFGILSIMLNILLILIILIRSPNEQSLQENLAPFRLFESSSRAEKSIDKVIQLLTIGYFLLALLYVIQSYF 76          
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: A0A8F0F7T2_9PHAE (Probable protein-export membrane protein SecG n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7T2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 5.170e-21
Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = 1
Query:   34 SIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKNYF 240
            S+++IT NI+LIL+IL+RSPNEQSLQENL P K FESSSKAEK  D  IQIL + YF LA+ Y I++YF
Sbjct:    8 SLLSITSNILLILVILVRSPNEQSLQENLDPLKLFESSSKAEKSIDKLIQILAIFYFVLALCYNIQSYF 76          
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: A0A8F0F9M4_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9M4_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.210e-19
Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 1
Query:   22 MKFISIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKNYF 240
            M    I+   +NI+LIL+IL+RSPNEQSLQENL PF  FESSS+AEK  D  I+ LT +YF LA+FY I+ YF
Sbjct:    4 MNIFGILTTILNIVLILVILVRSPNEQSLQENLDPFNLFESSSRAEKSIDRLIKRLTFMYFFLALFYAIQGYF 76          
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: A0A2I4Q2C6_9PHAE (Uncharacterized protein n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2C6_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.320e-19
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    4 NTNMIPMKFISIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKN 234
            NTN + M  I++++I  NI LILII++RSPNEQSLQENL+PF FFESSSKAE+  D  I +LT LYF   IF+T++ 
Sbjct:    2 NTNSVTM--INVLSIITNIFLILIIILRSPNEQSLQENLNPFPFFESSSKAERSLDKFIFVLTTLYFLFGIFFTVRR 76          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A2R4QPS9_9PHAE6.140e-2981.94Hypothetical chloroplast protein ycf47 n=3 Tax=Fuc... [more]
A0A141BSB1_9PHAE3.660e-2570.83Probable protein-export membrane protein SecG n=14... [more]
A0A5A4MI59_9PHAE1.090e-2264.38Uncharacterized protein n=4 Tax=Scytosiphonaceae T... [more]
A0A0R6LUQ0_UNDPI2.200e-2269.57Probable protein-export membrane protein SecG n=23... [more]
D1J765_ECTSI2.200e-2269.57Uncharacterized protein ycf47 n=2 Tax=Ectocarpus s... [more]
A0A6B7EUY5_9PHAE1.670e-2165.75Uncharacterized protein n=1 Tax=Cladosiphon okamur... [more]
A0A344PF79_9PHAE2.560e-2164.38Uncharacterized protein n=1 Tax=Endarachne bingham... [more]
A0A8F0F7T2_9PHAE5.170e-2166.67Probable protein-export membrane protein SecG n=2 ... [more]
A0A8F0F9M4_9PHAE1.210e-1960.27Uncharacterized protein n=1 Tax=Chorda asiatica Ta... [more]
A0A2I4Q2C6_9PHAE1.320e-1959.74Uncharacterized protein n=1 Tax=Dictyopteris divar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14897contigH-elongata_contig14897:3885..4127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size243
Cds size231
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929881.592102-UTR-H-elongata_contig14897:3884..38961622929881.592102-UTR-H-elongata_contig14897:3884..3896Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14897 3885..3896 +
1691679193.889986-UTR-H-elongata_contig14897:3884..38961691679193.889986-UTR-H-elongata_contig14897:3884..3896Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14897 3885..3896 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929881.6037748-CDS-H-elongata_contig14897:3896..41271622929881.6037748-CDS-H-elongata_contig14897:3896..4127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14897 3897..4127 +
1691679193.8997276-CDS-H-elongata_contig14897:3896..41271691679193.8997276-CDS-H-elongata_contig14897:3896..4127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14897 3897..4127 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14897.3281.1prot_H-elongata_contig14897.3281.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14897 3897..4127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14897.3281.1

>prot_H-elongata_contig14897.3281.1 ID=prot_H-elongata_contig14897.3281.1|Name=mRNA_H-elongata_contig14897.3281.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MIPMKFISIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEK
FFDNSIQILTVLYFSLAIFYTIKNYF*
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mRNA from alignment at H-elongata_contig14897:3885..4127+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14897.3281.1 ID=mRNA_H-elongata_contig14897.3281.1|Name=mRNA_H-elongata_contig14897.3281.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig14897:3885..4127+ (Himanthalia elongata Himel1 dioecious)
ATTAATACTAATATGATACCTATGAAATTTATTAGTATAATGGCAATAAC AATAAATATTATATTGATCCTTATTATCTTAATTAGAAGCCCTAACGAAC AAAGTTTACAAGAAAATTTGAGTCCTTTTAAATTTTTTGAAAGTTCTAGT AAAGCTGAAAAATTTTTTGATAATTCAATTCAAATATTAACAGTTTTATA CTTTAGTCTAGCTATTTTTTATACTATTAAAAATTATTTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig14897:3885..4127+

>mRNA_H-elongata_contig14897.3281.1 ID=mRNA_H-elongata_contig14897.3281.1|Name=mRNA_H-elongata_contig14897.3281.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig14897:3885..4127+ (Himanthalia elongata Himel1 dioecious)
ATGATACCTATGAAATTTATTAGTATAATGGCAATAACAATAAATATTAT
ATTGATCCTTATTATCTTAATTAGAAGCCCTAACGAACAAAGTTTACAAG
AAAATTTGAGTCCTTTTAAATTTTTTGAAAGTTCTAGTAAAGCTGAAAAA
TTTTTTGATAATTCAATTCAAATATTAACAGTTTTATACTTTAGTCTAGC
TATTTTTTATACTATTAAAAATTATTTTTAAATGATACCTATGAAATTTA
TTAGTATAATGGCAATAACAATAAATATTATATTGATCCTTATTATCTTA
ATTAGAAGCCCTAACGAACAAAGTTTACAAGAAAATTTGAGTCCTTTTAA
ATTTTTTGAAAGTTCTAGTAAAGCTGAAAAATTTTTTGATAATTCAATTC
AAATATTAACAGTTTTATACTTTAGTCTAGCTATTTTTTATACTATTAAA
AATTATTTTTAA
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