mRNA_H-elongata_contig14897.3281.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: A0A2R4QPS9_9PHAE (Hypothetical chloroplast protein ycf47 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPS9_9PHAE) HSP 1 Score: 107 bits (267), Expect = 6.140e-29 Identity = 59/72 (81.94%), Postives = 63/72 (87.50%), Query Frame = 1
Query: 25 KFISIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKNYF 240
KF+SI++I INIILI IILIRSPNEQSLQENL PFKFFESSSKAE F DN IQIL VLYFSLA+ Y IKNYF
Sbjct: 5 KFLSIISIGINIILIFIILIRSPNEQSLQENLDPFKFFESSSKAEIFIDNLIQILVVLYFSLALLYNIKNYF 76
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: A0A141BSB1_9PHAE (Probable protein-export membrane protein SecG n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSB1_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 3.660e-25 Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 1
Query: 22 MKFISIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKNY 237
MKF SI++I +N L+LIILIRSPNEQSLQENL PFK FESSSKAE DN I+ILT++YFS+A+ Y IKNY
Sbjct: 1 MKFFSIISIIVNFFLVLIILIRSPNEQSLQENLDPFKIFESSSKAENSIDNLIKILTIIYFSIALAYNIKNY 72
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: A0A5A4MI59_9PHAE (Uncharacterized protein n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MI59_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 1.090e-22 Identity = 47/73 (64.38%), Postives = 60/73 (82.19%), Query Frame = 1
Query: 22 MKFISIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKNYF 240
M +++I +NI+LIL+IL+RSPNEQSLQENL+PFK FESSS+AEK D IQ+LTVLYF LA+ Y I++YF
Sbjct: 4 MTIFGVLSILLNILLILVILVRSPNEQSLQENLAPFKLFESSSRAEKSIDKFIQLLTVLYFLLALIYVIQSYF 76
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: A0A0R6LUQ0_UNDPI (Probable protein-export membrane protein SecG n=23 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUQ0_UNDPI) HSP 1 Score: 90.9 bits (224), Expect = 2.200e-22 Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 1
Query: 34 SIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKNYF 240
SI++I +N L+LIIL+RSPNEQSLQENL PFK FESSS+AEK D IQILT+LYF LA+ YTI+ YF
Sbjct: 8 SILSIILNFSLVLIILVRSPNEQSLQENLDPFKLFESSSRAEKSIDKLIQILTILYFVLALVYTIQRYF 76
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: D1J765_ECTSI (Uncharacterized protein ycf47 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J765_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 2.200e-22 Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 1
Query: 34 SIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKNYF 240
SI++I +NI+LI IILIRSPNEQSLQENL+PFKFFESSS+AEK D IQILT+ YF +A+ Y I++YF
Sbjct: 8 SIISILLNILLISIILIRSPNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTIFYFIIALIYIIQSYF 76
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: A0A6B7EUY5_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EUY5_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 1.670e-21 Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 22 MKFISIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKNYF 240
M F S+ +I +NI+LILIILIRSPNEQSLQENL PFK FESS +AE D +QILT+LYF++AI Y I +YF
Sbjct: 1 MTFFSLFSILLNILLILIILIRSPNEQSLQENLIPFKLFESSRRAETSIDKLLQILTILYFTIAICYVIGSYF 73
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: A0A344PF79_9PHAE (Uncharacterized protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PF79_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 2.560e-21 Identity = 47/73 (64.38%), Postives = 59/73 (80.82%), Query Frame = 1
Query: 22 MKFISIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKNYF 240
M I++I +NI+LILIILIRSPNEQSLQENL+PF+ FESSS+AEK D IQ+LT+ YF LA+ Y I++YF
Sbjct: 4 MTLFGILSIMLNILLILIILIRSPNEQSLQENLAPFRLFESSSRAEKSIDKVIQLLTIGYFLLALLYVIQSYF 76
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: A0A8F0F7T2_9PHAE (Probable protein-export membrane protein SecG n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7T2_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 5.170e-21 Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = 1
Query: 34 SIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKNYF 240
S+++IT NI+LIL+IL+RSPNEQSLQENL P K FESSSKAEK D IQIL + YF LA+ Y I++YF
Sbjct: 8 SLLSITSNILLILVILVRSPNEQSLQENLDPLKLFESSSKAEKSIDKLIQILAIFYFVLALCYNIQSYF 76
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: A0A8F0F9M4_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9M4_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 1.210e-19 Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 1
Query: 22 MKFISIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKNYF 240
M I+ +NI+LIL+IL+RSPNEQSLQENL PF FESSS+AEK D I+ LT +YF LA+FY I+ YF
Sbjct: 4 MNIFGILTTILNIVLILVILVRSPNEQSLQENLDPFNLFESSSRAEKSIDRLIKRLTFMYFFLALFYAIQGYF 76
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Match: A0A2I4Q2C6_9PHAE (Uncharacterized protein n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2C6_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 1.320e-19 Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = 1
Query: 4 NTNMIPMKFISIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKFFDNSIQILTVLYFSLAIFYTIKN 234
NTN + M I++++I NI LILII++RSPNEQSLQENL+PF FFESSSKAE+ D I +LT LYF IF+T++
Sbjct: 2 NTNSVTM--INVLSIITNIFLILIIILRSPNEQSLQENLNPFPFFESSSKAERSLDKFIFVLTTLYFLFGIFFTVRR 76 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14897.3281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14897.3281.1 >prot_H-elongata_contig14897.3281.1 ID=prot_H-elongata_contig14897.3281.1|Name=mRNA_H-elongata_contig14897.3281.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp MIPMKFISIMAITINIILILIILIRSPNEQSLQENLSPFKFFESSSKAEKback to top mRNA from alignment at H-elongata_contig14897:3885..4127+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14897.3281.1 ID=mRNA_H-elongata_contig14897.3281.1|Name=mRNA_H-elongata_contig14897.3281.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig14897:3885..4127+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14897:3885..4127+ >mRNA_H-elongata_contig14897.3281.1 ID=mRNA_H-elongata_contig14897.3281.1|Name=mRNA_H-elongata_contig14897.3281.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig14897:3885..4127+ (Himanthalia elongata Himel1 dioecious)back to top |