mRNA_H-elongata_contig14887.3276.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14887.3276.1
Unique NamemRNA_H-elongata_contig14887.3276.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14887.3276.1 vs. uniprot
Match: A0A6H5LAB2_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAB2_9PHAE)

HSP 1 Score: 357 bits (916), Expect = 5.340e-116
Identity = 183/281 (65.12%), Postives = 216/281 (76.87%), Query Frame = 1
Query:    1 ASEIINRATLALVEPADKAPARYVRAFCGNKEVALKRWRATLRWRQESNIDSILGEPQPFFRNIRRCFPSHISGKSRSGNIVVFEKLGKVDIKTLKRKLGVTVPDFLRHWTFVSEYMYRVLQPTDSAQQVTIVDVKGLKIQSVAGDFQEYLKKTAQLARTYYVERSHKVFVVNAPAWFGLSFRVVSPFLSPRTKQKIRILGSDLTPLLDEIEPQFLPVEYGGLNTTPVEDSPEERDLRRLVAAINIS----------------GGGNDEMMATTSRPTRRS 795
            A+E ++RA  A +    K PARYVRAFCGN++ AL+RW+ATL+WR+E+ ID+IL EPQ FF +IRR FPSH+SG+SR G+IVV+EKLG VD++TL+RKLGVTVP  LRHW FVSEYMYRVLQPTDSAQQ+ I D+K ++IQ++AG  QEY+K  AQLAR +YVER HK FVVNAPAWFGLSFRVVSPFLS RT+QKIRILGSDLT L DEI+PQ LPVEYGG  T PV DSPEER+LRRLV AIN +                GGG       T RP+ RS
Sbjct:  112 AAEAMDRAAAAPLALEHKIPARYVRAFCGNEKHALERWKATLKWRKENEIDAILNEPQQFFHDIRRYFPSHMSGRSRGGHIVVYEKLGAVDMRTLRRKLGVTVPMLLRHWIFVSEYMYRVLQPTDSAQQINIEDMKDVRIQTLAGKIQEYVKAVAQLARLHYVERCHKTFVVNAPAWFGLSFRVVSPFLSARTRQKIRILGSDLTVLQDEIDPQLLPVEYGGTMTEPVSDSPEERNLRRLVDAINANADAEATVAATPKNGDDGGGAKXXXXPTRRPSFRS 392          
BLAST of mRNA_H-elongata_contig14887.3276.1 vs. uniprot
Match: D7G7T8_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7T8_ECTSI)

HSP 1 Score: 304 bits (779), Expect = 1.950e-98
Identity = 150/221 (67.87%), Postives = 183/221 (82.81%), Query Frame = 1
Query:    1 ASEIINRATLALVEPADKAPARYVRAFCGNKEVALKRWRATLRWRQESNIDSILGEPQPFFRNIRRCFPSHISGKSRSGNIVVFEKLGKVDIKTLKRKLGVTVPDFLRHWTFVSEYMYRVLQPTDSAQQVTIVDVKGLKIQSVAGDFQEYLKKTAQLARTYYVERSHKVFVVNAPAWFGLSFRVVSPFLSPRTKQKIRILGSDLTPLLDEIEPQFLPVEYG 663
            A+E ++RA  A +    K PARYVRAFCGN++ AL+RW+ATL+WR+E+ ID+IL EPQ FF +IRR FPSH+SG+SR G+IVV++KLG VD++TL+RKLGVTVP  LRHW FVSEYMYRVLQPTDSAQQ+ I D+K ++IQ++AG  QEY+K  AQLAR +YVER HK FVVNAPAWFGLSFRVVSPFLS RT+QKIRILGSDL+ L DEI PQ +  + G
Sbjct:  114 AAEAMDRAAAAPLALEHKIPARYVRAFCGNEKHALERWKATLKWRKENEIDAILNEPQQFFHDIRRYFPSHMSGRSRGGHIVVYDKLGGVDMRTLRRKLGVTVPMLLRHWIFVSEYMYRVLQPTDSAQQINIEDMKDVRIQTLAGKIQEYVKAVAQLARLHYVERCHKTFVVNAPAWFGLSFRVVSPFLSARTRQKIRILGSDLSALQDEIAPQAVMRDLG 334          
BLAST of mRNA_H-elongata_contig14887.3276.1 vs. uniprot
Match: A0A485K5A0_9STRA (Aste57867_436 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K5A0_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.780e-50
Identity = 89/229 (38.86%), Postives = 145/229 (63.32%), Query Frame = 1
Query:   64 RYVRAFCGNKEVALKRWRATLRWRQESNIDSILGEPQPFFRNIRRCFPSHISGKSRSGNIVVFEKLGKVDIKTLKRKLGVTVPDFLRHWTFVSEYMYRVLQPTDSAQQVTIVDVKGLKIQSVAGDFQEYLKKTAQLARTYYVERSHKVFVVNAPAWFGLSFRVVSPFLSPRTKQKIRILGSDLT--PLLDEIEPQFLPVEYGGLNTTPVEDSPEERDLRRLVAAINISG 744
            R++ A  G++E    RW AT +WR+E+NID +L EPQP F  I++ +P +  GKS++G+ V +E+LG VD KTLK K G+ +   LRH+ F++E++++VL+P+DS + +T++DV+      + GD   ++++    A  +Y ERS ++ V+N P WF +++R +SP + P TK KIRI  S  +   LL  I+   LP  YGG +   + +S EE+ L + V +  +SG
Sbjct:   31 RFIAAEKGDEEKGRHRWEATRQWRRENNIDGLLHEPQPHFDIIKKNYPQYFHGKSKNGHCVYYERLGYVDFKTLK-KSGLNMDQLLRHYMFITEFLWKVLEPSDSGRSITVLDVENFGFYDLTGDVTSFIRQAMAFAAAHYPERSAQIIVINVPGWFYMTWRAMSPMIDPVTKAKIRICNSSTSRDELLAAIDLDQLPSNYGGTSCA-LGESDEEKRLAQHVQSY-LSG 256          
BLAST of mRNA_H-elongata_contig14887.3276.1 vs. uniprot
Match: A0A835YIT9_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIT9_9STRA)

HSP 1 Score: 182 bits (461), Expect = 2.910e-50
Identity = 93/219 (42.47%), Postives = 137/219 (62.56%), Query Frame = 1
Query:  151 DSILGEPQPFFRNIRRCFPSHISGKSRSGNIVVFEKLGKVDIKTLKRKLGVTVPDFLRHWTFVSEYMYRVLQPTDSAQQVTIVDVKGLKIQSVAGDFQEYLKKTAQLARTYYVERSHKVFVVNAPAWFGLSFRVVSPFLSPRTKQK----------------------IRILGSDLTPLLD-EIEPQFLPVEYGGLNTTPVEDSPEERDLRRLVAAINI 738
            D IL EPQP F  I++ FP+ I G+ R G++VV+EK+G + +K L  + GVT+P  LRH+ F  EY++RV++P   AQ +TI DV+G+ +  + G   E+ K  AQ A  +YVER ++ F++N+PAWF L +  +SPF+  RTK+K                      +R+LGS+  P+L  EIEP  +P+EYGG  TTP+ +SPEE +L  +V AIN+
Sbjct:   96 DMILSEPQPMFNIIKQHFPAFIYGRGRKGHVVVYEKVGSIHMKELAHQ-GVTLPMLLRHYVFSMEYLWRVVEPRGDAQLITIQDVQGIGLSDLTGMALEFAKGAAQTASKHYVERCYRTFIINSPAWFPLLWAAISPFVPLRTKKKASALDCPCGNCLSNHVATASIHVRVLGSNYRPVLQQEIEPDMIPLEYGGSCTTPLHESPEEANLSAMVTAINM 313          
BLAST of mRNA_H-elongata_contig14887.3276.1 vs. uniprot
Match: A0A7S3Y7R1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7R1_HETAK)

HSP 1 Score: 182 bits (463), Expect = 7.580e-50
Identity = 91/243 (37.45%), Postives = 148/243 (60.91%), Query Frame = 1
Query:   58 PARYVRAFCGNKEVALKRWRATLRWRQESNIDSILGEPQPFFRNIRRCFPSHISGKSRSGNIVVFEKLGKVDIKTLKRKLGVTVPDFLRHWTFVSEYMYRVLQPTDSAQQVTIVDVKGLKIQSVAGDFQEYLKKTAQLARTYYVERSHKVFVVNAPAWFGLSFRVVSPFLSPRTKQKIRILGSD-LTPLLDEIEPQFLPVEYGGLNTTPVEDSPEERDLRRLVAAIN-------ISGGGNDEM 762
            P RY+R   G+ E A +RW  TLRWR+E N+D IL EPQP+F  I++ +P     + R+G +  +E++G+ DI+ ++ + GVT+   +RH+ FVSE+++R ++  D AQ +TI+D++G       GD +E+ ++ + + +++YVERS+K+FV+NAP WF + ++VV P L   T++KI I G      LL  + P+ +P EYGG       +S  E+ +   V   N        +G G+DEM
Sbjct:  161 PDRYIRGCDGDLEEARRRWALTLRWRREQNVDGILDEPQPYFFVIKKYYPHFTYKRGRNGCVTYYEQVGRADIEAMRAR-GVTIAALVRHYVFVSEFLWRRIEADDDAQAITIMDIEGCGFSQFKGDTKEFFQQCSSVIQSHYVERSNKIFVINAPGWFNMIWKVVRPMLHENTQRKISICGKGRYEELLAYVGPENVPAEYGGTCRDAFYNSELEKPMHDFVREKNQASPLGLYTGEGDDEM 402          
BLAST of mRNA_H-elongata_contig14887.3276.1 vs. uniprot
Match: A0A3R6Z8R0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6Z8R0_9STRA)

HSP 1 Score: 177 bits (449), Expect = 7.020e-48
Identity = 88/230 (38.26%), Postives = 141/230 (61.30%), Query Frame = 1
Query:   64 RYVRAFCGNKEVALKRWRATLRWRQESNIDSILGEPQPFFRNIRRCFPSHISGKSRSGNIVVFEKLGKVDIKTLKRKLGVTVPDFLRHWTFVSEYMYRVLQPTDSAQQVTIVDVKGLKIQSVAGDFQEYLKKTAQLARTYYVERSHKVFVVNAPAWFGLSFRVVSPFLSPRTKQKIRILGSDLTP--LLDEIEPQFLPVEYGGLNTTPVEDSPEERDLRRLVAAINISGG 747
            R++ A  GN E    R+ +TL+WR+E+N+D +L EPQP F  I++ +P +  GKS  G+ V +EK+GK+D+K +K   G+T+   LRH+ +++EYM+ +L+P+DS + VT++DV G+    +AGD   ++++        Y ERS ++F+VN P WF + + VVSP + P TK+KIRI         LL  I    LP +YGG ++  + +S EE  L + V  +  + G
Sbjct:  321 RFIAAEKGNVEKGRARYESTLQWRRENNVDGMLQEPQPHFHLIKKYYPQYFHGKSIKGHCVYYEKVGKIDLKAMKAA-GLTIDQLLRHYVYLTEYMWTILEPSDSGRSVTVLDVNGIGFYDLAGDVLLFVRQATGFVSANYPERSAQIFIVNVPTWFNMVWSVVSPMIDPVTKEKIRICKGRAVKEELLKSIAEDQLPADYGG-SSVKLGESDEEVALAKYVDQVLAASG 548          
BLAST of mRNA_H-elongata_contig14887.3276.1 vs. uniprot
Match: A0A6G0WJQ6_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJQ6_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.230e-47
Identity = 85/222 (38.29%), Postives = 139/222 (62.61%), Query Frame = 1
Query:   64 RYVRAFCGNKEVALKRWRATLRWRQESNIDSILGEPQPFFRNIRRCFPSHISGKSRSGNIVVFEKLGKVDIKTLKRKLGVTVPDFLRHWTFVSEYMYRVLQPTDSAQQVTIVDVKGLKIQSVAGDFQEYLKKTAQLARTYYVERSHKVFVVNAPAWFGLSFRVVSPFLSPRTKQKIRILGSDLTP--LLDEIEPQFLPVEYGGLNTTPVEDSPEERDLRRLV 723
            R++ A  GN E   +R+ ATL+WR+E+ ID++L EPQP F  I++ +P +  GKS++G+ V +E+LG VD KTLK K G+++   L H+ +++E+++++L+P+DS + +T++DV       + GD   ++++    A  +Y ERS ++ V+N P WF  ++R +SP + P TK KIRI  S      LL  I+   LP  YGG +   + +S EER L + V
Sbjct:   32 RFIAAEKGNLEKGRQRYEATLKWRRENRIDTLLYEPQPHFHIIKQNYPQYFHGKSKNGHRVYYERLGYVDFKTLK-KSGLSMDQLLHHYMYITEFLWKILEPSDSGRSITVLDVANFGFFDLTGDVTSFIRQAMAFAGEHYPERSAQIIVINVPGWFNATYRAMSPLIDPVTKAKIRICTSSTATQELLAAIDIDQLPSNYGGTSCA-LGESEEERILAQHV 251          
BLAST of mRNA_H-elongata_contig14887.3276.1 vs. uniprot
Match: A0A024UU13_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UU13_9STRA)

HSP 1 Score: 177 bits (448), Expect = 7.150e-47
Identity = 91/233 (39.06%), Postives = 143/233 (61.37%), Query Frame = 1
Query:   64 RYVRAFCGNKEVALKRWRATLRWRQESNIDSILGEPQPFFRNIRRCFPSHISGKSRSGNIVVFEKLGKVDIKTLKRKLGVTVPDFLRHWTFVSEYMYRVLQPTDSAQQVTIVDVKGLKIQSVAGDFQEYLKKTAQLARTYYVERSHKVFVVNAPAWFGLSFRVVSPFLSPRTKQKIRILGSDLTP--LLDEIEPQFLPVEYGGLNTTPVEDSPEERDLRRLV-AAINISGGGN 753
            R++ A  GN E    R+ +TL+WR+E+N+D +L EPQP F  I++ +P +  GKS  G+ V +EK+GK+D+K +K   G+T+   LRH+ +++EYM+ +L+P+DS + VT++DV G+    +AGD   ++++        Y ERS ++F+VN P WF + + VVSP + P TK+KIRI         LL  I    LP +YGG ++  + +S EE  L + V  A+  SG  N
Sbjct:  477 RFIAAEKGNVEKGRARYESTLQWRRENNVDGMLQEPQPHFHLIKKYYPQYFHGKSIKGHCVYYEKVGKIDLKAMKAA-GLTIDQLLRHYVYLTEYMWTILEPSDSGRSVTVLDVNGIGFYDLAGDVLLFVRQATGFVSANYPERSAQIFIVNVPTWFNMVWSVVSPMIDPVTKEKIRICKGRAVKEELLKSIAEDQLPADYGG-SSVKLGESDEEVALAKYVDQALAASGHPN 707          
BLAST of mRNA_H-elongata_contig14887.3276.1 vs. uniprot
Match: A0A6H5K979_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K979_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.020e-46
Identity = 94/230 (40.87%), Postives = 147/230 (63.91%), Query Frame = 1
Query:   58 PARYVRAFCGNKEVALKRWRATLRWRQESNIDSILGEPQPFFRNIRRCFPSHISGKSRSGNIVVFEKLGKVDIKTLKRKLGVTVPDFLRHWTFVSEYMYRVLQPT-DSAQQVTIVDVKGLKIQSVAGDFQEYLKKTAQLARTYYVERSHKVFVVNAPAWFGLSFRVVSPFLSPRTKQKIRILGSDL----TPLLDEIEPQFLPVEYGGLNTTPVEDSPEERDLRRLVAAI 732
            P RY+R   G+   A +RWR TL WR +  ID +L EPQP F  I+R +P +I  ++R+G  V  E  G++D+  + R  GV+     RH+ FV+EYM+ VL+P  ++ Q VT++DV+GL ++ +AG+   ++K+   + + +YVERS+++F+VNAP++F L +RV+ P L+ RT+ KI I+ +D       LL+ I P+ LP +YGG     + +S EE DLR  VA+I
Sbjct:  302 PGRYLRGCAGDPVEAERRWRLTLEWRAKERIDEVLREPQPHFELIKRHYPHYIHRRARNGCPVWIELPGRIDLPAI-RSAGVSPEALQRHYVFVTEYMWGVLEPDFENGQAVTVLDVQGLGMRDLAGEALGFVKQATAIIQDHYVERSNRMFIVNAPSYFSLIWRVIRPMLNERTQAKIGIINTDAKKIAAALLECIAPENLPRQYGGTCPLDLGESEEETDLRAYVASI 530          
BLAST of mRNA_H-elongata_contig14887.3276.1 vs. uniprot
Match: D8LBN1_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN1_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 1.690e-46
Identity = 94/230 (40.87%), Postives = 147/230 (63.91%), Query Frame = 1
Query:   58 PARYVRAFCGNKEVALKRWRATLRWRQESNIDSILGEPQPFFRNIRRCFPSHISGKSRSGNIVVFEKLGKVDIKTLKRKLGVTVPDFLRHWTFVSEYMYRVLQPT-DSAQQVTIVDVKGLKIQSVAGDFQEYLKKTAQLARTYYVERSHKVFVVNAPAWFGLSFRVVSPFLSPRTKQKIRILGSDL----TPLLDEIEPQFLPVEYGGLNTTPVEDSPEERDLRRLVAAI 732
            P RY+R   G+   A +RWR TL WR +  ID +L EPQP F  I+R +P +I  ++R+G  V  E  G++D+  + R  GV+     RH+ FV+EYM+ VL+P  ++ Q VT++DV+GL ++ +AG+   ++K+   + + +YVERS+++F+VNAP++F L +RV+ P L+ RT+ KI I+ +D       LL+ I P+ LP +YGG     + +S EE DLR  VA+I
Sbjct:  304 PGRYLRGCAGDPVEAERRWRLTLEWRAKERIDEVLREPQPHFELIKRHYPHYIHRRARNGCPVWIELPGRIDLPAI-RSAGVSPEALQRHYVFVTEYMWGVLEPDFENGQAVTVLDVQGLGMRDLAGEALGFVKQATAIVQDHYVERSNRMFIVNAPSYFSLIWRVIRPMLNERTQAKIGIINTDAKKIAAALLECIAPENLPRQYGGTCPLDLGESEEELDLRTYVASI 532          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14887.3276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LAB2_9PHAE5.340e-11665.12CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D7G7T8_ECTSI1.950e-9867.87CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A485K5A0_9STRA1.780e-5038.86Aste57867_436 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A835YIT9_9STRA2.910e-5042.47CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3Y7R1_HETAK7.580e-5037.45Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A3R6Z8R0_9STRA7.020e-4838.26Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A6G0WJQ6_9STRA1.230e-4738.29CRAL-TRIO domain-containing protein n=1 Tax=Aphano... [more]
A0A024UU13_9STRA7.150e-4739.06Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6H5K979_9PHAE1.020e-4640.87CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D8LBN1_ECTSI1.690e-4640.87CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14887contigH-elongata_contig14887:382..2823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score306.2
Seed ortholog evalue1.7e-80
Seed eggNOG ortholog2880.D7G7T8
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-06_000330.1
Exons5
Model size906
Cds size906
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14887.3276.1prot_H-elongata_contig14887.3276.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14887 382..2823 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929881.2509093-CDS-H-elongata_contig14887:381..5961622929881.2509093-CDS-H-elongata_contig14887:381..596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14887 382..596 +
1691679193.7417917-CDS-H-elongata_contig14887:381..5961691679193.7417917-CDS-H-elongata_contig14887:381..596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14887 382..596 +
1622929881.2681253-CDS-H-elongata_contig14887:913..10211622929881.2681253-CDS-H-elongata_contig14887:913..1021Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14887 914..1021 +
1691679193.763145-CDS-H-elongata_contig14887:913..10211691679193.763145-CDS-H-elongata_contig14887:913..1021Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14887 914..1021 +
1622929881.2833996-CDS-H-elongata_contig14887:1340..14401622929881.2833996-CDS-H-elongata_contig14887:1340..1440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14887 1341..1440 +
1691679193.7723312-CDS-H-elongata_contig14887:1340..14401691679193.7723312-CDS-H-elongata_contig14887:1340..1440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14887 1341..1440 +
1622929881.322596-CDS-H-elongata_contig14887:1930..21491622929881.322596-CDS-H-elongata_contig14887:1930..2149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14887 1931..2149 +
1691679193.7819545-CDS-H-elongata_contig14887:1930..21491691679193.7819545-CDS-H-elongata_contig14887:1930..2149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14887 1931..2149 +
1622929881.3361669-CDS-H-elongata_contig14887:2559..28231622929881.3361669-CDS-H-elongata_contig14887:2559..2823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14887 2560..2823 +
1691679193.793273-CDS-H-elongata_contig14887:2559..28231691679193.793273-CDS-H-elongata_contig14887:2559..2823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14887 2560..2823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14887.3276.1

>prot_H-elongata_contig14887.3276.1 ID=prot_H-elongata_contig14887.3276.1|Name=mRNA_H-elongata_contig14887.3276.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=302bp
ASEIINRATLALVEPADKAPARYVRAFCGNKEVALKRWRATLRWRQESNI
DSILGEPQPFFRNIRRCFPSHISGKSRSGNIVVFEKLGKVDIKTLKRKLG
VTVPDFLRHWTFVSEYMYRVLQPTDSAQQVTIVDVKGLKIQSVAGDFQEY
LKKTAQLARTYYVERSHKVFVVNAPAWFGLSFRVVSPFLSPRTKQKIRIL
GSDLTPLLDEIEPQFLPVEYGGLNTTPVEDSPEERDLRRLVAAINISGGG
NDEMMATTSRPTRRSPGNRWRLSPDTTLGGDEQAPALRSVEQSPCQRVRK
L*
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mRNA from alignment at H-elongata_contig14887:382..2823+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14887.3276.1 ID=mRNA_H-elongata_contig14887.3276.1|Name=mRNA_H-elongata_contig14887.3276.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2442bp|location=Sequence derived from alignment at H-elongata_contig14887:382..2823+ (Himanthalia elongata Himel1 dioecious)
GCCTCCGAGATCATCAACCGCGCGACGCTGGCCCTTGTGGAGCCTGCGGA CAAAGCGCCCGCCCGCTACGTTCGAGCGTTCTGCGGAAACAAGGAGGTGG CGCTGAAACGCTGGAGAGCCACCCTGCGCTGGAGACAGGAGAGCAATATC GACTCCATCCTGGGAGAGCCACAACCTTTTTTCCGAAACATACGACGCTG CTTCCCGAGCCACATGTGAGCAAGGATTTAGTTTGTGCTGGAAGTGTTGA GTGATTTTTTCCAAGCGTACCGCGTACGCCAGCGAGCGCCCTCTGATGAT GGTGCTGTGTAAAAGGCCTATGTCACGCAATGCCTTCTTGACCCAGCCAC CGTAGCTGATGGTTTTCGTGGCAGCCTCCCTTGGCACTGTTTAAACAGAG CGAATAGCACGAAGAGCTAGACGACATCTAGCCCGCTACAACTGAAATCG ATGTTGCAGACATTGATCATTTATGTTTGTGTGTTCGGCCGTGTGCCGTG CCGTGTGCCTTGGCGCGTGCCATGCACTGAAGAAGCGGGAAGAGTAGATC CGGCAACATCGTGGTCTTCGAGAAGCTCGGCAAAGTGGATATCAAGACTC TCAAGCGCAAGCTTGGGGTTACCGTGCCCGACTTCCTGAGGTGTGAAAAA GGGTTATTTTTCTCTACCAAAATATGTGTTTGACATTCGTTACGGTCCAC CCGATCCTCGTTCTTCTCTATCTTGGCCTAACCGACTAAACATTGAAACC GTTGGGGCGTTTGTCGCAGCACGCTGGGATGCACCCGGTGCACCCTGGGA AGGGACGACCACCGGCGTTAGTCTATCACCCTTCTCGAGCATAGACAAAA CAAATTCAGTTCTTGCAAGGGGGTGTGATGACCCACGGAAGAAGCTCACG GAGTACGAACACAGCTTTTCAAAAACATAAGTCCGTTGGCGCGTGGTGCT TGGTCACAGGCACTGGACGTTCGTGTCAGAGTACATGTACCGCGTGCTGC AGCCCACGGACTCCGCTCAGCAGGTCACAATCGTGGACGTGAAAGGCCTC AAAATTCAGGTGCGAGATAGATCGCGATCGTATCCCGCGAGTTCAACTCT GCAGCGACGAACCCACCAATCGCGGCCGGTGTTGCCCTGGTTCTTTGGTG TGACGTCGGCACTTCGTTATCCCTGCCCAAAGCGTTCACATTATACTTTT TACTGTAGGGTTGTGTGGTATTGCGTAAAACTTTATGCCGCATTGCTGGA AGGATCGCGAAACTAAACTATACTATACTACACTATACTATATTATACTG TACTATACTATACTATACTAAACTAACCTATACTAAGCTCGAAAGCTCTA AAACGAAGAAGTCCTCCACGCGCCTGGGGCAATACGAAATGAAATATTAT TTATACTGAACCACGAAATATACAATTTATGTTTAAAAAAGAACTCATCC CAACCCTCCGAATATCCACACCTTCTAGTAGTAGTAGTGTTACCAAAAGC TATCAATAGTACTAGTACTGAGATCGACCTGTGCGTCGTTCCGTCTCAGT CGGTGGCGGGCGATTTCCAAGAGTACTTGAAGAAGACCGCTCAGCTAGCG CGCACGTACTACGTGGAGCGCAGCCACAAGGTCTTCGTGGTGAATGCGCC CGCTTGGTTCGGGTTATCGTTCCGAGTTGTTTCTCCTTTCTTGAGCCCCA GGACGAAGCAGAAGATTAGAATCCTGGGGTCAGACCTGACCCCTCTACTA GATGAGATAGAACCGCAGGTGACGAGACAATCAACGACAGACGACAGGCC GAAAATAAGCACTAAGAAGTCCCGTCGTACTTTTAATGGTGTCGCGCCGG CATCAATGGTTTGCTGCGCTTACACTAAGCGCCTGTAAGGTCGAGAGAAG TCTATCATTTTCTCTCCTTGTCTCTCGTGGGTGTGACTAGAAGGATTCAA AGTGTAGTATGGGTTTTAAATGAGTAAGAGGTTGAAGAGACTGGAGGCGT CAAGCTCGAGGCGGTGAGAGGCTATTGATGTTTTCTCATACAGCACAACT GCAACGATAAAAACCATGGTACAAGTGATTAAGGGGAATTCATTGCCTCC GGCGTCTGTCCGTTCTCCCGCTTCCATTTTCCGATTGACGCCATTTGTGT ACCACACTATACCATATATCGTGTGGAGTTCCTACCGGTGGAGTACGGAG GCCTGAACACCACGCCTGTGGAGGACAGCCCCGAGGAACGCGATCTGCGC CGCCTTGTTGCTGCTATCAATATCAGTGGAGGAGGTAACGACGAGATGAT GGCGACGACATCGCGACCAACTCGCCGATCCCCTGGAAATCGGTGGAGGT TATCCCCTGACACGACGCTAGGTGGGGACGAGCAGGCTCCAGCATTGCGG AGTGTCGAGCAGTCTCCTTGTCAGCGGGTGAGGAAGCTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig14887:382..2823+

>mRNA_H-elongata_contig14887.3276.1 ID=mRNA_H-elongata_contig14887.3276.1|Name=mRNA_H-elongata_contig14887.3276.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1812bp|location=Sequence derived from alignment at H-elongata_contig14887:382..2823+ (Himanthalia elongata Himel1 dioecious)
GCCTCCGAGATCATCAACCGCGCGACGCTGGCCCTTGTGGAGCCTGCGGA
CAAAGCGCCCGCCCGCTACGTTCGAGCGTTCTGCGGAAACAAGGAGGTGG
CGCTGAAACGCTGGAGAGCCACCCTGCGCTGGAGACAGGAGAGCAATATC
GACTCCATCCTGGGAGAGCCACAACCTTTTTTCCGAAACATACGACGCTG
CTTCCCGAGCCACATGCCTCCGAGATCATCAACCGCGCGACGCTGGCCCT
TGTGGAGCCTGCGGACAAAGCGCCCGCCCGCTACGTTCGAGCGTTCTGCG
GAAACAAGGAGGTGGCGCTGAAACGCTGGAGAGCCACCCTGCGCTGGAGA
CAGGAGAGCAATATCGACTCCATCCTGGGAGAGCCACAACCTTTTTTCCG
AAACATACGACGCTGCTTCCCGAGCCACATAAGCGGGAAGAGTAGATCCG
GCAACATCGTGGTCTTCGAGAAGCTCGGCAAAGTGGATATCAAGACTCTC
AAGCGCAAGCTTGGGGTTACCGTGCCCGACTTCCTGAGAAGCGGGAAGAG
TAGATCCGGCAACATCGTGGTCTTCGAGAAGCTCGGCAAAGTGGATATCA
AGACTCTCAAGCGCAAGCTTGGGGTTACCGTGCCCGACTTCCTGAGGCAC
TGGACGTTCGTGTCAGAGTACATGTACCGCGTGCTGCAGCCCACGGACTC
CGCTCAGCAGGTCACAATCGTGGACGTGAAAGGCCTCAAAATTCAGGCAC
TGGACGTTCGTGTCAGAGTACATGTACCGCGTGCTGCAGCCCACGGACTC
CGCTCAGCAGGTCACAATCGTGGACGTGAAAGGCCTCAAAATTCAGTCGG
TGGCGGGCGATTTCCAAGAGTACTTGAAGAAGACCGCTCAGCTAGCGCGC
ACGTACTACGTGGAGCGCAGCCACAAGGTCTTCGTGGTGAATGCGCCCGC
TTGGTTCGGGTTATCGTTCCGAGTTGTTTCTCCTTTCTTGAGCCCCAGGA
CGAAGCAGAAGATTAGAATCCTGGGGTCAGACCTGACCCCTCTACTAGAT
GAGATAGAACCGCAGTCGGTGGCGGGCGATTTCCAAGAGTACTTGAAGAA
GACCGCTCAGCTAGCGCGCACGTACTACGTGGAGCGCAGCCACAAGGTCT
TCGTGGTGAATGCGCCCGCTTGGTTCGGGTTATCGTTCCGAGTTGTTTCT
CCTTTCTTGAGCCCCAGGACGAAGCAGAAGATTAGAATCCTGGGGTCAGA
CCTGACCCCTCTACTAGATGAGATAGAACCGCAGTTCCTACCGGTGGAGT
ACGGAGGCCTGAACACCACGCCTGTGGAGGACAGCCCCGAGGAACGCGAT
CTGCGCCGCCTTGTTGCTGCTATCAATATCAGTGGAGGAGGTAACGACGA
GATGATGGCGACGACATCGCGACCAACTCGCCGATCCCCTGGAAATCGGT
GGAGGTTATCCCCTGACACGACGCTAGGTGGGGACGAGCAGGCTCCAGCA
TTGCGGAGTGTCGAGCAGTCTCCTTGTCAGCGGGTGAGGAAGCTGTAGTT
CCTACCGGTGGAGTACGGAGGCCTGAACACCACGCCTGTGGAGGACAGCC
CCGAGGAACGCGATCTGCGCCGCCTTGTTGCTGCTATCAATATCAGTGGA
GGAGGTAACGACGAGATGATGGCGACGACATCGCGACCAACTCGCCGATC
CCCTGGAAATCGGTGGAGGTTATCCCCTGACACGACGCTAGGTGGGGACG
AGCAGGCTCCAGCATTGCGGAGTGTCGAGCAGTCTCCTTGTCAGCGGGTG
AGGAAGCTGTAG
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