mRNA_H-elongata_contig14882.3272.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: D8LLC4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLC4_ECTSI) HSP 1 Score: 182 bits (462), Expect = 2.020e-51 Identity = 96/104 (92.31%), Postives = 102/104 (98.08%), Query Frame = 1
Query: 7 TNRNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRNQ 318
+NRNVQAKNRAPA+IQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKE+EDAIRKQREHIGNWLKY+ WEESQ EFER+RSVYER+LEVDYRNQ
Sbjct: 2 SNRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRNQ 105
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: A0A7S2UZX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZX6_9STRA) HSP 1 Score: 133 bits (335), Expect = 4.960e-38 Identity = 70/105 (66.67%), Postives = 91/105 (86.67%), Query Frame = 1
Query: 4 STNRNVQAKNRAPAAIQITAEQILREAKDRQ-LDVE-VKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYR 312
+T +++ KNRAPA IQITAEQILREAK+R +D E +KAPRQ ITD EEL+ +RMRKRKE+ED+IR+QR+H+G W+KYA WEESQ+E+ER+RS+YER L+V+YR
Sbjct: 16 NTAKSIPVKNRAPAPIQITAEQILREAKERSFVDSETIKAPRQNITDLEELQTYRMRKRKEFEDSIRRQRQHLGTWMKYATWEESQKEYERARSIYERALDVEYR 120
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: A0A835ZA95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA95_9STRA) HSP 1 Score: 136 bits (342), Expect = 7.160e-35 Identity = 71/88 (80.68%), Postives = 80/88 (90.91%), Query Frame = 1
Query: 10 NRNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERS 273
+RN+Q KNRAPA IQI+AEQILREA+DRQ+DVEVKAPRQQITD EEL VFRMRKRKEYED+IR QR+HIG W+KYAAWEESQ EF R+
Sbjct: 2 SRNIQVKNRAPAPIQISAEQILREARDRQIDVEVKAPRQQITDAEELTVFRMRKRKEYEDSIRMQRQHIGTWIKYAAWEESQAEFARA 89
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: W7TBF3_9STRA (Pre-mrna-splicing factor clf1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBF3_9STRA) HSP 1 Score: 126 bits (316), Expect = 8.800e-35 Identity = 72/102 (70.59%), Postives = 83/102 (81.37%), Query Frame = 1
Query: 10 NRNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRN 315
+R V KNRAPAAIQITAEQILREA DR + E KAPR ITD EELR +R+ KRKE+ED IR+QR +G ++KYAAWEESQ EFER+RSVYER L+VDYRN
Sbjct: 2 SRKVLVKNRAPAAIQITAEQILREANDRVVQ-EDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRN 102
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: A0A7S3XNW0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNW0_HETAK) HSP 1 Score: 133 bits (335), Expect = 4.990e-34 Identity = 69/105 (65.71%), Postives = 90/105 (85.71%), Query Frame = 1
Query: 4 STNRNVQAKNRAPAAIQITAEQILREAKDRQLDVE-VKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRN 315
S N+ +Q KNRAPA IQITAEQILRE+K+R +D + +KAPRQ ITD EEL +RMRKRKE+ED+IR+QR+H+G W KYA WEESQ+E+ER+RS+YER L+VD+++
Sbjct: 4 SINKAIQPKNRAPAPIQITAEQILRESKERSVDGQNIKAPRQNITDLEELTQYRMRKRKEFEDSIRRQRQHLGTWHKYAKWEESQKEYERARSIYERALDVDFKS 108
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: L8GIJ4_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIJ4_ACACA) HSP 1 Score: 118 bits (295), Expect = 5.130e-32 Identity = 65/108 (60.19%), Postives = 88/108 (81.48%), Query Frame = 1
Query: 13 RNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRNQVRFLRF 336
R Q KN++ A IQITAEQI+REA++RQ + E++ P+Q+ITD+EEL +R+RKRKE+ED IR+QR I NWLKYAAWE+SQ E ER+R+VYER L+V+YRN +L++
Sbjct: 8 RAPQVKNKSAAEIQITAEQIIREAQERQ-EEEIQPPKQKITDKEELDEYRLRKRKEFEDQIRRQRGLITNWLKYAAWEDSQGEMERARNVYERALDVEYRNVTIWLKW 114
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: A0A1V9ZES9_9STRA (Pre-mRNA-splicing factor, Crooked neck n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZES9_9STRA) HSP 1 Score: 126 bits (317), Expect = 1.850e-31 Identity = 68/105 (64.76%), Postives = 85/105 (80.95%), Query Frame = 1
Query: 1 MSTNRNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRN 315
MS+ + KNRAPA IQITAEQILREA+DR+ + VK R++ITD EEL +RM KRK +ED IR+QREH+GNW+KYA WEE+Q EFER+RS+YER L+VDY+N
Sbjct: 1 MSSGKKSAVKNRAPAPIQITAEQILREAQDRK-EAAVKPSRRRITDIEELDEYRMSKRKTFEDQIRRQREHMGNWIKYAQWEEAQHEFERARSIYERALDVDYKN 104
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: A0A4D9CYM6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYM6_9STRA) HSP 1 Score: 126 bits (316), Expect = 2.630e-31 Identity = 72/102 (70.59%), Postives = 83/102 (81.37%), Query Frame = 1
Query: 10 NRNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRN 315
+R V KNRAPAAIQITAEQILREA DR + E KAPR ITD EELR +R+ KRKE+ED IR+QR +G ++KYAAWEESQ EFER+RSVYER L+VDYRN
Sbjct: 2 SRKVLVKNRAPAAIQITAEQILREANDRVVQ-EDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRN 102
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: U6KMV9_EIMTE (Crooked neck-like protein 1, putative n=1 Tax=Eimeria tenella TaxID=5802 RepID=U6KMV9_EIMTE) HSP 1 Score: 116 bits (291), Expect = 7.210e-31 Identity = 63/110 (57.27%), Postives = 85/110 (77.27%), Query Frame = 1
Query: 13 RNVQAKNRAPAAIQITAEQILREAKDRQL-DVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRNQVRFLRFL 339
+ ++ KN+ PAA+QITAEQ+LREA DRQL D P+Q+I DEEEL V+R+ KRKE+ED+IR+QR HIG W+KYA WE +QRE +RSV+ER L VDY+N +L+++
Sbjct: 22 KQMEVKNKMPAAVQITAEQLLREAVDRQLEDAAAAKPQQRIVDEEELEVYRLNKRKEFEDSIRRQRHHIGTWIKYALWEAAQRE---ARSVFERALLVDYQNVSLWLKYI 128
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: A0A2G8LIW3_STIJA (Putative crooked neck-like protein 1-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LIW3_STIJA) HSP 1 Score: 118 bits (295), Expect = 7.520e-31 Identity = 59/96 (61.46%), Postives = 80/96 (83.33%), Query Frame = 1
Query: 28 KNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRN 315
KN+ PA +QITAEQILREAK+R+L+ P+Q+ITD EEL+ +++RKRKE+ED +RK R +GNW+KYAAWE+SQ E +R+RS+YER L+VD+RN
Sbjct: 20 KNKMPAEMQITAEQILREAKERELEAVPAPPKQKITDPEELQEYKLRKRKEFEDNLRKNRSVMGNWIKYAAWEDSQNEIDRARSIYERALDVDHRN 115 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14882.3272.1 >prot_H-elongata_contig14882.3272.1 ID=prot_H-elongata_contig14882.3272.1|Name=mRNA_H-elongata_contig14882.3272.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp MSTNRNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELback to top mRNA from alignment at H-elongata_contig14882:6575..7318- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14882.3272.1 ID=mRNA_H-elongata_contig14882.3272.1|Name=mRNA_H-elongata_contig14882.3272.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=744bp|location=Sequence derived from alignment at H-elongata_contig14882:6575..7318- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14882:6575..7318- >mRNA_H-elongata_contig14882.3272.1 ID=mRNA_H-elongata_contig14882.3272.1|Name=mRNA_H-elongata_contig14882.3272.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig14882:6575..7318- (Himanthalia elongata Himel1 dioecious)back to top |