mRNA_H-elongata_contig14882.3272.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14882.3272.1
Unique NamemRNA_H-elongata_contig14882.3272.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: D8LLC4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLC4_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 2.020e-51
Identity = 96/104 (92.31%), Postives = 102/104 (98.08%), Query Frame = 1
Query:    7 TNRNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRNQ 318
            +NRNVQAKNRAPA+IQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKE+EDAIRKQREHIGNWLKY+ WEESQ EFER+RSVYER+LEVDYRNQ
Sbjct:    2 SNRNVQAKNRAPASIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEFEDAIRKQREHIGNWLKYSTWEESQMEFERARSVYERSLEVDYRNQ 105          
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: A0A7S2UZX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZX6_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.960e-38
Identity = 70/105 (66.67%), Postives = 91/105 (86.67%), Query Frame = 1
Query:    4 STNRNVQAKNRAPAAIQITAEQILREAKDRQ-LDVE-VKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYR 312
            +T +++  KNRAPA IQITAEQILREAK+R  +D E +KAPRQ ITD EEL+ +RMRKRKE+ED+IR+QR+H+G W+KYA WEESQ+E+ER+RS+YER L+V+YR
Sbjct:   16 NTAKSIPVKNRAPAPIQITAEQILREAKERSFVDSETIKAPRQNITDLEELQTYRMRKRKEFEDSIRRQRQHLGTWMKYATWEESQKEYERARSIYERALDVEYR 120          
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: A0A835ZA95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA95_9STRA)

HSP 1 Score: 136 bits (342), Expect = 7.160e-35
Identity = 71/88 (80.68%), Postives = 80/88 (90.91%), Query Frame = 1
Query:   10 NRNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERS 273
            +RN+Q KNRAPA IQI+AEQILREA+DRQ+DVEVKAPRQQITD EEL VFRMRKRKEYED+IR QR+HIG W+KYAAWEESQ EF R+
Sbjct:    2 SRNIQVKNRAPAPIQISAEQILREARDRQIDVEVKAPRQQITDAEELTVFRMRKRKEYEDSIRMQRQHIGTWIKYAAWEESQAEFARA 89          
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: W7TBF3_9STRA (Pre-mrna-splicing factor clf1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBF3_9STRA)

HSP 1 Score: 126 bits (316), Expect = 8.800e-35
Identity = 72/102 (70.59%), Postives = 83/102 (81.37%), Query Frame = 1
Query:   10 NRNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRN 315
            +R V  KNRAPAAIQITAEQILREA DR +  E KAPR  ITD EELR +R+ KRKE+ED IR+QR  +G ++KYAAWEESQ EFER+RSVYER L+VDYRN
Sbjct:    2 SRKVLVKNRAPAAIQITAEQILREANDRVVQ-EDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRN 102          
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: A0A7S3XNW0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNW0_HETAK)

HSP 1 Score: 133 bits (335), Expect = 4.990e-34
Identity = 69/105 (65.71%), Postives = 90/105 (85.71%), Query Frame = 1
Query:    4 STNRNVQAKNRAPAAIQITAEQILREAKDRQLDVE-VKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRN 315
            S N+ +Q KNRAPA IQITAEQILRE+K+R +D + +KAPRQ ITD EEL  +RMRKRKE+ED+IR+QR+H+G W KYA WEESQ+E+ER+RS+YER L+VD+++
Sbjct:    4 SINKAIQPKNRAPAPIQITAEQILRESKERSVDGQNIKAPRQNITDLEELTQYRMRKRKEFEDSIRRQRQHLGTWHKYAKWEESQKEYERARSIYERALDVDFKS 108          
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: L8GIJ4_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIJ4_ACACA)

HSP 1 Score: 118 bits (295), Expect = 5.130e-32
Identity = 65/108 (60.19%), Postives = 88/108 (81.48%), Query Frame = 1
Query:   13 RNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRNQVRFLRF 336
            R  Q KN++ A IQITAEQI+REA++RQ + E++ P+Q+ITD+EEL  +R+RKRKE+ED IR+QR  I NWLKYAAWE+SQ E ER+R+VYER L+V+YRN   +L++
Sbjct:    8 RAPQVKNKSAAEIQITAEQIIREAQERQ-EEEIQPPKQKITDKEELDEYRLRKRKEFEDQIRRQRGLITNWLKYAAWEDSQGEMERARNVYERALDVEYRNVTIWLKW 114          
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: A0A1V9ZES9_9STRA (Pre-mRNA-splicing factor, Crooked neck n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZES9_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.850e-31
Identity = 68/105 (64.76%), Postives = 85/105 (80.95%), Query Frame = 1
Query:    1 MSTNRNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRN 315
            MS+ +    KNRAPA IQITAEQILREA+DR+ +  VK  R++ITD EEL  +RM KRK +ED IR+QREH+GNW+KYA WEE+Q EFER+RS+YER L+VDY+N
Sbjct:    1 MSSGKKSAVKNRAPAPIQITAEQILREAQDRK-EAAVKPSRRRITDIEELDEYRMSKRKTFEDQIRRQREHMGNWIKYAQWEEAQHEFERARSIYERALDVDYKN 104          
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: A0A4D9CYM6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYM6_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.630e-31
Identity = 72/102 (70.59%), Postives = 83/102 (81.37%), Query Frame = 1
Query:   10 NRNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRN 315
            +R V  KNRAPAAIQITAEQILREA DR +  E KAPR  ITD EELR +R+ KRKE+ED IR+QR  +G ++KYAAWEESQ EFER+RSVYER L+VDYRN
Sbjct:    2 SRKVLVKNRAPAAIQITAEQILREANDRVVQ-EDKAPRVHITDPEELREYRVMKRKEFEDQIRRQRMFLGTYMKYAAWEESQHEFERARSVYERCLDVDYRN 102          
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: U6KMV9_EIMTE (Crooked neck-like protein 1, putative n=1 Tax=Eimeria tenella TaxID=5802 RepID=U6KMV9_EIMTE)

HSP 1 Score: 116 bits (291), Expect = 7.210e-31
Identity = 63/110 (57.27%), Postives = 85/110 (77.27%), Query Frame = 1
Query:   13 RNVQAKNRAPAAIQITAEQILREAKDRQL-DVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRNQVRFLRFL 339
            + ++ KN+ PAA+QITAEQ+LREA DRQL D     P+Q+I DEEEL V+R+ KRKE+ED+IR+QR HIG W+KYA WE +QRE   +RSV+ER L VDY+N   +L+++
Sbjct:   22 KQMEVKNKMPAAVQITAEQLLREAVDRQLEDAAAAKPQQRIVDEEELEVYRLNKRKEFEDSIRRQRHHIGTWIKYALWEAAQRE---ARSVFERALLVDYQNVSLWLKYI 128          
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Match: A0A2G8LIW3_STIJA (Putative crooked neck-like protein 1-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LIW3_STIJA)

HSP 1 Score: 118 bits (295), Expect = 7.520e-31
Identity = 59/96 (61.46%), Postives = 80/96 (83.33%), Query Frame = 1
Query:   28 KNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEELRVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLEVDYRN 315
            KN+ PA +QITAEQILREAK+R+L+     P+Q+ITD EEL+ +++RKRKE+ED +RK R  +GNW+KYAAWE+SQ E +R+RS+YER L+VD+RN
Sbjct:   20 KNKMPAEMQITAEQILREAKERELEAVPAPPKQKITDPEELQEYKLRKRKEFEDNLRKNRSVMGNWIKYAAWEDSQNEIDRARSIYERALDVDHRN 115          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14882.3272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLC4_ECTSI2.020e-5192.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UZX6_9STRA4.960e-3866.67Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835ZA95_9STRA7.160e-3580.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TBF3_9STRA8.800e-3570.59Pre-mrna-splicing factor clf1 n=1 Tax=Nannochlorop... [more]
A0A7S3XNW0_HETAK4.990e-3465.71Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
L8GIJ4_ACACA5.130e-3260.19Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A1V9ZES9_9STRA1.850e-3164.76Pre-mRNA-splicing factor, Crooked neck n=1 Tax=Thr... [more]
A0A4D9CYM6_9STRA2.630e-3170.59Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
U6KMV9_EIMTE7.210e-3157.27Crooked neck-like protein 1, putative n=1 Tax=Eime... [more]
A0A2G8LIW3_STIJA7.520e-3161.46Putative crooked neck-like protein 1-like n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14882contigH-elongata_contig14882:6575..7318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue1.1e-43
Seed eggNOG ortholog2880.D8LLC4
Preferred nameCRNKL1
KEGG koko:K12869
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0071007,GO:0071010,GO:0071011,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsKOG1915@1,KOG1915@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size366
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929880.7206795-CDS-H-elongata_contig14882:6574..67601622929880.7206795-CDS-H-elongata_contig14882:6574..6760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14882 6575..6760 -
1691679193.5892112-CDS-H-elongata_contig14882:6574..67601691679193.5892112-CDS-H-elongata_contig14882:6574..6760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14882 6575..6760 -
1622929880.7377086-CDS-H-elongata_contig14882:7138..73181622929880.7377086-CDS-H-elongata_contig14882:7138..7318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14882 7139..7318 -
1691679193.602226-CDS-H-elongata_contig14882:7138..73181691679193.602226-CDS-H-elongata_contig14882:7138..7318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14882 7139..7318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14882.3272.1prot_H-elongata_contig14882.3272.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14882 6575..7318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14882.3272.1

>prot_H-elongata_contig14882.3272.1 ID=prot_H-elongata_contig14882.3272.1|Name=mRNA_H-elongata_contig14882.3272.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MSTNRNVQAKNRAPAAIQITAEQILREAKDRQLDVEVKAPRQQITDEEEL
RVFRMRKRKEYEDAIRKQREHIGNWLKYAAWEESQREFERSRSVYERTLE
VDYRNQVRFLRFLYSLPLCYC*
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mRNA from alignment at H-elongata_contig14882:6575..7318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14882.3272.1 ID=mRNA_H-elongata_contig14882.3272.1|Name=mRNA_H-elongata_contig14882.3272.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=744bp|location=Sequence derived from alignment at H-elongata_contig14882:6575..7318- (Himanthalia elongata Himel1 dioecious)
ATGTCTACTAATCGAAATGTACAGGCGAAGAACCGAGCCCCAGCGGCGAT ACAAATTACTGCGGAACAGATTCTTCGGGAGGCAAAGGACCGGCAGCTCG ATGTCGAGGTTAAGGCTCCGCGGCAGCAGATCACCGATGAGGAGGAGCTG CGTGTGTTTCGCATGCGCAAGCGAAAAGAGGTAAGGAGGTAGAAGTATAC CCAAATGAAATAAATATTTTTTCCCGTTATCCTTGTTTGCATGCAGGATA GCTTCGAACGAGGAAGAAGTGGTTGGGTTGAGTTTGATTAATGGCTAGGC CATACGCAGGGGGGTTGAGAGAGGGGTGGCTTTCAATGGACGCCGTTGAC CGAATCGCCCGTGAATTTGGTAGAAAACGCACTTTTTAAAATGTATTCTT TGAAAAGTTAGGAACTAATTCAAAGAACCCTTCAATTTCGACACCGAGCG CTACCCACGACTACAAGAGGGTCATGATTCGAGTGCTGCTCTGCCCACTC CCGGATGGAATTCCCTCCGTCTGTTTCTGTTATTTGTATATCGCCGCAAC CACTCTAGTATGAAGATGCGATTCGAAAGCAGAGAGAGCATATCGGCAAT TGGTTAAAGTACGCCGCCTGGGAGGAATCACAGAGGGAGTTCGAGCGCTC GAGGAGCGTGTACGAACGCACCCTCGAGGTGGACTACCGGAATCAGGTGA GGTTCCTTAGGTTCCTTTACTCTCTTCCCCTCTGCTATTGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig14882:6575..7318-

>mRNA_H-elongata_contig14882.3272.1 ID=mRNA_H-elongata_contig14882.3272.1|Name=mRNA_H-elongata_contig14882.3272.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig14882:6575..7318- (Himanthalia elongata Himel1 dioecious)
ATGTCTACTAATCGAAATGTACAGGCGAAGAACCGAGCCCCAGCGGCGAT
ACAAATTACTGCGGAACAGATTCTTCGGGAGGCAAAGGACCGGCAGCTCG
ATGTCGAGGTTAAGGCTCCGCGGCAGCAGATCACCGATGAGGAGGAGCTG
CGTGTGTTTCGCATGCGCAAGCGAAAAGAGATGTCTACTAATCGAAATGT
ACAGGCGAAGAACCGAGCCCCAGCGGCGATACAAATTACTGCGGAACAGA
TTCTTCGGGAGGCAAAGGACCGGCAGCTCGATGTCGAGGTTAAGGCTCCG
CGGCAGCAGATCACCGATGAGGAGGAGCTGCGTGTGTTTCGCATGCGCAA
GCGAAAAGAGTATGAAGATGCGATTCGAAAGCAGAGAGAGCATATCGGCA
ATTGGTTAAAGTACGCCGCCTGGGAGGAATCACAGAGGGAGTTCGAGCGC
TCGAGGAGCGTGTACGAACGCACCCTCGAGGTGGACTACCGGAATCAGGT
GAGGTTCCTTAGGTTCCTTTACTCTCTTCCCCTCTGCTATTGTTGATATG
AAGATGCGATTCGAAAGCAGAGAGAGCATATCGGCAATTGGTTAAAGTAC
GCCGCCTGGGAGGAATCACAGAGGGAGTTCGAGCGCTCGAGGAGCGTGTA
CGAACGCACCCTCGAGGTGGACTACCGGAATCAGGTGAGGTTCCTTAGGT
TCCTTTACTCTCTTCCCCTCTGCTATTGTTGA
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