mRNA_H-elongata_contig14802.3237.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: A0A6H5L4U5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U5_9PHAE) HSP 1 Score: 328 bits (840), Expect = 2.640e-108 Identity = 174/317 (54.89%), Postives = 204/317 (64.35%), Query Frame = 1
Query: 4 QNDVPPPGAYYRRPTLERDARWCGSVSAKGYCGGFLSAAPRFRDVNMLQQAHLPGPGSYDAQVDTGYDGAARLASFSNLKR-----------------NCRFTPNSTTDVPGPGEYNPDCKNRHRDVSR-------PTSSFLCQRRSLHVGPNVVTPAPGAYELARTQQGKVGKDGAILKDHFFRSGTKRDLTFIPPSEVPGPGEYEVDRRTATRMEAIVKRGERTTVQAGAKIGRSTERS-----KDDEFVTPGPGWYTPHQTQPPEKASSSSSMFRSGTKRFARTRVVVAPGPAFYQPDPLEKKSFRWNGKKQWI 867
QNDVPPPGAYYRR TLERD CGSVSAKGY GFLS APRF+D+N LQQA+LPGPGSY + G +L SFS+LKR +C F + VPGPGEYN D NR+ ++ PTSSFLC R L+VG ++ TPAPG YEL TQ V K G +LKD FFRS T+R+ +FI S+VPGPGEY+VDR A EA G + + AG + + R ++E VTPGPGWYTPHQT+ PE+ SSSSSMFRSGTKRFA APGPAFYQP+PL KKSFRWN KQW+
Sbjct: 64 QNDVPPPGAYYRRSTLERDGNVCGSVSAKGYGTGFLSNAPRFKDLNTLQQAYLPGPGSYTIPAE-GVQEGTKLTSFSSLKRVRLARHAYLSSHPYNTQDCGFAQDHLGIVPGPGEYNTDRGNRNNTANKNRAGAPNPTSSFLCARTPLNVGTHLETPAPGTYELLPTQHSHVDKSGNVLKDPFFRSQTRRNASFIAASDVPGPGEYDVDRGVANSTEAFGSGGGKGS-GAGGRPSQQLRRGGGGRVNEEEEVTPGPGWYTPHQTKAPERFSSSSSMFRSGTKRFAGIGPPGAPGPAFYQPEPLGKKSFRWNATKQWV 378
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: D7FJS9_ECTSI (Peptide chain release factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS9_ECTSI) HSP 1 Score: 321 bits (823), Expect = 6.910e-101 Identity = 172/303 (56.77%), Postives = 201/303 (66.34%), Query Frame = 1
Query: 7 NDVPPPGAYYRRPTLERDARWCGSVSAKGYCGGFLSAAPRFRDVNMLQQAHLPGPGSYDAQ-VDTGYDGAARLASFSNLKRNCRFTPNSTTDVPGPGEYNPDCKNRHRDVSR-------PTSSFLCQRRSLHVGPNVVTPAPGAYELARTQQGKVGKDGAILKDHFFRSGTKRDLTFIPPSEVPGPGEYEVDRRTATRMEAIVKRGERTTVQAGAKIGRSTERSKDDEF--------VTPGPGWYTPHQTQPPEKASSSSSMFRSGTKRFARTRVVVAPGPAFYQPDPLEKKSFRWNGKKQWI 867
NDVPPPGAYYRR TLERD + CGSVSAKGY GF+S APRF+D+N LQQA+LPGPGSY A+ V G +L SFS+LKR+ VPGPGEYN D NR+ ++ PTSSFLC R L+VG ++ TPAPG YEL TQQ V K G LKD FFRS T+R+ +FI S+VPGPGEY+VDR A EA+ G R GR +++ + VTPGPGWYTPHQT+PPE+ SSSSMFRS TKRFA T APGPAFYQP+PL KKSFRWN KQW+
Sbjct: 502 NDVPPPGAYYRRSTLERDGKVCGSVSAKGYGTGFVSNAPRFKDLNTLQQAYLPGPGSYTAEDVQEG----TKLTSFSSLKRDLGI-------VPGPGEYNIDRGNRNNTTNKNRAGAPNPTSSFLCARTPLNVGTHLETPAPGTYELLPTQQSHVDKSGNALKDPFFRSQTRRNASFIAASDVPGPGEYDVDRGVANSTEALGSGGGR----GXXXXGRPSQQLRXXXXXXXXXXXEVTPGPGWYTPHQTKPPERFLSSSSMFRSATKRFAGTGPPGAPGPAFYQPEPLGKKSFRWNATKQWV 789
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: L1K036_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K036_GUITC) HSP 1 Score: 76.3 bits (186), Expect = 4.020e-12 Identity = 82/336 (24.40%), Postives = 126/336 (37.50%), Query Frame = 1
Query: 1 TQNDVPPPGAYYRRPTLERDARWCGSVSAKGYCGGFLSAAPRFRDVNMLQQAHLPGPGSYD---------AQVDTGYDGAARLASFSNLKRNCRFTPNSTTDVPGPGEYNPDCKNRHRDVSRPTSSFLCQRRSLHVGPNVVTPAPGA----YELARTQQGKVGKDGAILKDHFFRSGTKRDLTF--------------------------------IPPSEVPGPGEYEVDRRTATRMEAIVKRGERTTVQAGA-KIGRSTERSKDDEFVTPGPGWYTPHQTQPPEKASSSSSMFRSGTKRFARTRV-VVAPGPAFYQPDPLEKKSFRWNGKKQWI 867
++N++P PG YY+ T + + S S KGY G +S + RF + ++A P PGSYD ++ D + + + ++ T PGPG+Y + F H GA YE G + + FRS T R + + P +PGPG Y + R A R T V + + + E+ K TPGPG Y + Q +K ++ S F S T+R + VAPGPA+Y P+ + KKSF +N ++W+
Sbjct: 42 SENELPGPGQYYKPKTNQTNP----SQSVKGYTG-MVSKSQRF---SRPRRATAPCPGSYDPVRGFLAVHSRKDFNFGASRAFCQPIVSPDYVKGRRSNNTTGPGPGQYEASVDLTSPRYAGKKVPFSSGTERFHELKKAYGTGEGAGEYDYESIARITGAFNELNKKVPSAAFRSRTGRKFDYMRASRDNPLDALKPHPSLGPSLGIHVDIKPNQLKPEMMPGPGYY--NPRAAEEYSLQKLRHSATFVPSKQDRFAQPAEKYK----ATPGPGAYEVLKDQS-QKVEATMSAFVSSTEREVDIKARTVAPGPAYYNPNVIRKKSFHYNSNQRWV 362
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: UPI001BE9593D (O(6)-methylguanine-induced apoptosis 2 n=1 Tax=Chelmon rostratus TaxID=109905 RepID=UPI001BE9593D) HSP 1 Score: 74.7 bits (182), Expect = 1.080e-11 Identity = 84/292 (28.77%), Postives = 118/292 (40.41%), Query Frame = 1
Query: 7 NDVPPPGAYYRRPTLERDARWCGSVSAKGYCGGFLSAAPRFRDVNMLQQAHLPGPGSYDAQ--VDTGYDGAARLASFSNLKRNCRFT-PNSTTDVPGPGEYNPDCKNRHRDVSRP-TSSFLCQRRSLHVGPNVVTPAPGAYELARTQQGKVGKDGAILKDHFFRSGTKRDLTFIPPSEVPGPGEYEVDRRTATRMEAIVKRGERTTVQAGAKIGRSTERSKDDEFVTPGPGWYTPHQTQPPEKASSSSSMFRSGTKRFART-RVVVAPGPAFYQPDPLEKKSFRWNGKKQWI 867
N+ P PG+Y E + S S KG G S A R Q PGP +Y+ Q + YD ++ L + P T P P +++ C R R S TS+FL + PN P+P YE+ V + G++ F+S T+R + VPGPG Y + A I+ RG + A + KD PGPG Y K ++ F S T+R R + + PGP FY P L K+SF +N + WI
Sbjct: 54 NENPGPGSYGCISNAEVRSP---SFSKKGTTGFVASKAAR---ATRNPQRGTPGPNAYNLQSCLINKYDFNIGVSRVFRLPVAVQLDGPKHNT--PAPNQFDVCCGGRQRFSSVVGTSAFLSKTGRDSFYPNKNVPSPCHYEV----NDNVIQHGSMAVLSPFKSKTQRIPAPVDYG-VPGPGAYSPHQTPAPVKRTILPRGYYLAISAPPLMV-----PKDPPL--PGPGQYDIGNYNRSSKHPIPTAAFASRTERIPRNAQADMRPGPGFYDPQILSKRSFFYNESRVWI 325
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: UPI001C08000B (O(6)-methylguanine-induced apoptosis 2 isoform X1 n=2 Tax=Alosa TaxID=34772 RepID=UPI001C08000B) HSP 1 Score: 73.9 bits (180), Expect = 2.000e-11 Identity = 83/292 (28.42%), Postives = 123/292 (42.12%), Query Frame = 1
Query: 7 NDVPPPGAYYRRPTLERDARWCGSVSAKGYCGGFLSAAPRFRDVNMLQQAHLPGPGSYDAQVDTGYDGAARLASFSNLKRNCRFTPNSTTD-VPGPGEYNPDCKNRHRDVSRPTSS-FLCQ-RRSLHVGPNVVTPAPGAYELARTQQGKVGKDGAILKDHFFRSGTKRDLTFIPPSEVPGPGEYEVDRRTATRMEAIVKRGERTTVQAGAKIGRSTERSKDDEFVT-PGPGWYTPHQTQPPEKASSSSSMFRSGTKRFART-RVVVAPGPAFYQPDPLEKKSFRWNGKKQWI 867
N+ P PGAY E ++ S S KG GGF S A R V+ +PGP +Y+ Q S N + +S T P P +YN + + S FL + +R++ + P+P Y + T K K + F+S R+ + SE PGPG Y ++ +VKR T + +G S K E PGPG Y + K S++ F SGT R+ + + PGP FY P+ + K+SF +N +K W+
Sbjct: 55 NENPGPGAYLSHTPAENNSP---SFSKKG-TGGFASKAHR---VSRNLHRGIPGPNAYNLQSSLLPKHTFLRGSTRNFRLPIAVKLDSVTKGTPAPNQYNVSYGGVDKSTTISAHSVFLSKTKRNMANLNGLKGPSPCHYNVNDTITQKDPK----VPYSCFKSNIARNPLPLK-SEGPGPGAYN-----PYQIPEMVKR---TILPRRHYLGLSAPPLKLSENPPLPGPGQYDIVNYEGSPKHFMSTAAFVSGTSRWVQNPKGHDVPGPGFYDPEIMSKRSFIYNHRKNWV 326
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: A0A8C5BUV7_GADMO (Sperm-tail PG-rich repeat containing 1 n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5BUV7_GADMO) HSP 1 Score: 68.6 bits (166), Expect = 1.390e-9 Identity = 81/297 (27.27%), Postives = 120/297 (40.40%), Query Frame = 1
Query: 1 TQNDVPPPGAYYRRPTLERDARWCGSVSAKGYCGGFLSAAPRFRDVNMLQQAHLPGPGSYDAQVDTGYDGAARLASFSNLKRNCR-------FTPNSTTDVPGPGEYNPDCKNRHRD---VSRPTSSFLCQRRSLHVGPNVVTPAPGAYELARTQQGKVGKDGAILKDHFFRSGTKRDLTFIPPSEVPGPGEYEVDRRTATRMEAIVKRGERTTVQAGAKIGRSTERSKDDEFVTPGPGWYTPHQTQPPEKASSSSSMFRSGTKRFAR--TRVVVAPGPAFYQPDPLEKKSFRWNGK 855
T N+ P PG+Y P+ E + S S KG F S PR V + LPGP SY+ Q + AR + R R P T PGP +Y D H S+ +S+FL + + + N P+P Y+++ T K+ F+S + R + VPGPG Y + + + R + + A++ K + PGPG Y + P S++ F S T+R + PGP +Y+P L KKSF +N K
Sbjct: 49 TLNENPGPGSYCPLPSAET---FSPSFSKKGTTS-FPSKVPR---VPRHHKRGLPGPDSYNLQSSS----IARHSFGRGASRAFRAPVAVPVLGPKFRT--PGPDQY--DVSGGHPGGSFQSKGSSTFLSKTKRCDLAINPNLPSPCHYQISCTAT----KNSPRAAMSPFKSKSSRFPAQVD-HRVPGPGAYNLHHSPDPLRKPTLLRRKVLVMATPARLV-----PKGPAY--PGPGQYDLVDYEGPSSHPGSTAAFLSETRRSPQGGRAPQAGPGPGYYEPQKLSKKSFLYNPK 318
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: A0A7S1XXV1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXV1_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 1.480e-9 Identity = 83/340 (24.41%), Postives = 110/340 (32.35%), Query Frame = 1
Query: 13 VPPPGAYYR-RPTLERDARWCGSVSAKGYCGGFLSAAPRFRDVNMLQQAHLPGPGSYDAQVDTGYDGAARLASFSNLKRNCRFTPNSTTDVPGPGEYNPDCKNRHRDVSRPTSSFLCQRRSLHVGPNVVTPAP-------------------------------------GAYELARTQQGKVGKDGAILKDHFFRSGTKRDLTFIPPSEVPGPGEYEVDRRTATRMEAIVKRGERTTVQAGAKIGRSTERSKDDEFV-------TPGPGWYTPHQTQPPEKASSSSSM----------FRSGTKRFARTRVVVAPGPAFYQPDPLEKKSFRWNGKKQWI 867
VP PG+YY+ R RD CGSVS KG+ GGF+S RF D L+ A PGPG+YD L F PN+ P + P K+R D P + GA A + GK + A K R D P VD+ + +++ + +++ A + R + PGPG Y A +SS F SG+KR APGPAFY P KKSF N K +W+
Sbjct: 96 VPGPGSYYKPRNHWIRDPSTCGSVSKKGFGGGFISKTTRFTDRGELESALAPGPGAYDP-----------------LTAQPLFNPNN--QAPTSSMFAPAKKSRLEDALGPVGTVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYEVGAASDALHRFGKNEEPNAAFKSQSLRG---IDAEIRAKRAQPXXXXXXVDQ-----ADLLMRTDVSSRLRSSAAFQNNARRFGGPQSALAAGPADVPGPGAYGVSAVGSIANAGTSSLADGLRKKSGYGFGSGSKRNTVDIKREAPGPAFYTPSAPPKKSFLMNSKMRWV 408
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: A0A7S0X611_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X611_9CHLO) HSP 1 Score: 64.7 bits (156), Expect = 3.730e-8 Identity = 89/339 (26.25%), Postives = 126/339 (37.17%), Query Frame = 1
Query: 10 DVPPPGAYYRRPTLERDARWCGSVSAKGYCGGFLSAAPRF-RDVNMLQQAHLPGP-GSYDAQV---DTGYDGAARLASFSNLKRNCRFTPNSTTDV---PGPGEYNPDCKNRH--RDVSRP-TSSFLCQRRSLHVGPNVVTPAPGAYEL----------ARTQQGKVGKDGAILKD---------HFFRSGTK------RDLTFIPPSEVPGPGEYEV--DRR-TATRMEAIVKRGERTTVQAGAKIGRSTERSKDDEF-----------VTPGPGWYTPHQTQPPEKASSSSSMFRSGTKRF---ARTRVVVAPGPAFYQPDPLEKKSFRWNGKKQWI 867
D P PGAY + S+S KGY GF+S R R ++ PG GS A++ T ++ A SF+ N V PGPG Y + V R T F +R S + P+PG Y + R+ K + L H RSG+ RD + S PGPG+Y DR TA R+ +Q K + R+ DD F V PGPG Y + + F+S + R R + PGPAFY P +++KSF N +++++
Sbjct: 69 DYPGPGAYTTDGQASTMVKSLESLSKKGYGNGFVSGERRLPRSPGEYFRSPGPGAYGSGAARMLVSKTDFNRAKSTGSFARPLENVGPPLEPRVAVRPPPGPGAYTIRAAGAAGVKSVFRSGTERFGSERASAA---SASMPSPGTYNVHVVASSFRSDTRSAPSAAFKSTSRLDSAGQAGGSGSHARRSGSGAPSIIYRDTENVGASGAPGPGQYGYGFDREETAYRL----------LIQRAGKSSAAFARTSDDRFGHSTLNRVVSCVAPGPGQYAVSGALGYGDHRAVTGPFKSTSARSDPNGRKATSLPPGPAFYSPASVDRKSFHLNAQRRFM 394
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: A0A5J4VH88_9EUKA (Uncharacterized protein n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4VH88_9EUKA) HSP 1 Score: 58.2 bits (139), Expect = 6.960e-6 Identity = 86/308 (27.92%), Postives = 110/308 (35.71%), Query Frame = 1
Query: 58 DARWCGSVSAKGYCGGFLSAAPRFRDVNMLQQAHLPGPGSYDAQVDTGYDGAARLASFSNLKRNCRFTPNSTTDVPGPGEYNP------DCKNRHRDVSRPTSSFLCQRRSLHVGPN-VVTPAPGAYELARTQQGKVGKDGAILKDH---------------FFRSGTKRDLTFIPPSEV--PGPGEYEVDRRTATRME-----------AIVKRGERTTVQAGAKIGRSTERSKDDEF----------VTPGPGWYTPHQTQPPEKASSSSSMFRSGTKRFARTRVVVAPGPAFY--QPDPLEKKSF 840
D+R G + +G G SA+ V PGPG+Y+ + + FS RFT +STT+VPGPG YNP H + TSS S+ PN G + + G+ G G H F SGT R T SE PGPG Y+ + ++ R E + V G Q IG F V PGPG YTP S+ F+S RF R+ PGP Y QP L K+SF
Sbjct: 285 DSRKGGGIRGRGLLGTGKSASEIGYSV--------PGPGAYE-EPRLLIPKPPSMHPFSQTSS--RFT-SSTTEVPGPGNYNPIRPDSPSFTTTHPTCANTTSSAF-GASSMRFDPNQAAVGIQGGAKASFVMGGRNGVPGPGAYTHEDALVTVFRRRHPTSSFTSGTSRFYT----SETLPPGPGAYKT-KDSSIRFEPQLTLTGEIHPSSVFIGPPRDKQVAGMIGIGDGAGGGFTFGKNGMNSSGIVVPGPGAYTPDLISAQSSIGVKSTGFQSTQSRFG-DRLADIPGPGAYEVQPPELIKRSF 573
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: Q22UQ0_TETTS (Sperm-tail PG-rich repeat protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q22UQ0_TETTS) HSP 1 Score: 57.0 bits (136), Expect = 1.200e-5 Identity = 56/230 (24.35%), Postives = 96/230 (41.74%), Query Frame = 1
Query: 160 LPGPGSYDAQVDTGYDGAARLASFSNLKRNCRFTPNSTTDVPGPGEYNPDCKNRHRDVSRPTSSFLCQRRSLHVGPNVVTPAPGAYELARTQQGKVGKDGAILKDHFFRSGTKRDLTFIPPSEVPGPGEYEVDRRTATRMEAIVKRGERTTVQAGAKIGRSTERSKDDEFVTPGPGWYTPHQTQPPEKASSSSSMFRSGTKRFARTRVVVAPGPAFYQPDPLEKKSFRWN 849
PGPG+Y D+ + ++R S + R+ R + P P EYNP+ + +R + + F +R PG Y L + K + +K F + R+LT +P SE PGPG+Y ++ + TV + A++ T + V PG G Y Q ++ S ++F S + + + + + AP A++ P + R N
Sbjct: 87 FPGPGTYMPNYDSIFPNSSR----STIPRSPREL-SKHEKKPDPCEYNPNQADIYRRKNSGNTKFSLDKRKFFTIKTEYDLGPGQYNLDSSFT--PNKSLSSVKQISFTK-SDRNLTNLPLSEEPGPGQYNPQKQQLYK----------NTVFSQARLDDKTSMYAIHQ-VNPGVGTYNVELNQ--QQKQSPRAVFSSEKRFYVQEKAIPAPN-AYHIPSKFDSYIRREN 294 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14802.3237.1 >prot_H-elongata_contig14802.3237.1 ID=prot_H-elongata_contig14802.3237.1|Name=mRNA_H-elongata_contig14802.3237.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=290bp TQNDVPPPGAYYRRPTLERDARWCGSVSAKGYCGGFLSAAPRFRDVNMLQback to top mRNA from alignment at H-elongata_contig14802:439..2343+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14802.3237.1 ID=mRNA_H-elongata_contig14802.3237.1|Name=mRNA_H-elongata_contig14802.3237.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1905bp|location=Sequence derived from alignment at H-elongata_contig14802:439..2343+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14802:439..2343+ >mRNA_H-elongata_contig14802.3237.1 ID=mRNA_H-elongata_contig14802.3237.1|Name=mRNA_H-elongata_contig14802.3237.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1740bp|location=Sequence derived from alignment at H-elongata_contig14802:439..2343+ (Himanthalia elongata Himel1 dioecious)back to top |