mRNA_H-elongata_contig14802.3237.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14802.3237.1
Unique NamemRNA_H-elongata_contig14802.3237.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: A0A6H5L4U5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U5_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 2.640e-108
Identity = 174/317 (54.89%), Postives = 204/317 (64.35%), Query Frame = 1
Query:    4 QNDVPPPGAYYRRPTLERDARWCGSVSAKGYCGGFLSAAPRFRDVNMLQQAHLPGPGSYDAQVDTGYDGAARLASFSNLKR-----------------NCRFTPNSTTDVPGPGEYNPDCKNRHRDVSR-------PTSSFLCQRRSLHVGPNVVTPAPGAYELARTQQGKVGKDGAILKDHFFRSGTKRDLTFIPPSEVPGPGEYEVDRRTATRMEAIVKRGERTTVQAGAKIGRSTERS-----KDDEFVTPGPGWYTPHQTQPPEKASSSSSMFRSGTKRFARTRVVVAPGPAFYQPDPLEKKSFRWNGKKQWI 867
            QNDVPPPGAYYRR TLERD   CGSVSAKGY  GFLS APRF+D+N LQQA+LPGPGSY    + G     +L SFS+LKR                 +C F  +    VPGPGEYN D  NR+   ++       PTSSFLC R  L+VG ++ TPAPG YEL  TQ   V K G +LKD FFRS T+R+ +FI  S+VPGPGEY+VDR  A   EA    G + +  AG +  +   R       ++E VTPGPGWYTPHQT+ PE+ SSSSSMFRSGTKRFA      APGPAFYQP+PL KKSFRWN  KQW+
Sbjct:   64 QNDVPPPGAYYRRSTLERDGNVCGSVSAKGYGTGFLSNAPRFKDLNTLQQAYLPGPGSYTIPAE-GVQEGTKLTSFSSLKRVRLARHAYLSSHPYNTQDCGFAQDHLGIVPGPGEYNTDRGNRNNTANKNRAGAPNPTSSFLCARTPLNVGTHLETPAPGTYELLPTQHSHVDKSGNVLKDPFFRSQTRRNASFIAASDVPGPGEYDVDRGVANSTEAFGSGGGKGS-GAGGRPSQQLRRGGGGRVNEEEEVTPGPGWYTPHQTKAPERFSSSSSMFRSGTKRFAGIGPPGAPGPAFYQPEPLGKKSFRWNATKQWV 378          
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: D7FJS9_ECTSI (Peptide chain release factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS9_ECTSI)

HSP 1 Score: 321 bits (823), Expect = 6.910e-101
Identity = 172/303 (56.77%), Postives = 201/303 (66.34%), Query Frame = 1
Query:    7 NDVPPPGAYYRRPTLERDARWCGSVSAKGYCGGFLSAAPRFRDVNMLQQAHLPGPGSYDAQ-VDTGYDGAARLASFSNLKRNCRFTPNSTTDVPGPGEYNPDCKNRHRDVSR-------PTSSFLCQRRSLHVGPNVVTPAPGAYELARTQQGKVGKDGAILKDHFFRSGTKRDLTFIPPSEVPGPGEYEVDRRTATRMEAIVKRGERTTVQAGAKIGRSTERSKDDEF--------VTPGPGWYTPHQTQPPEKASSSSSMFRSGTKRFARTRVVVAPGPAFYQPDPLEKKSFRWNGKKQWI 867
            NDVPPPGAYYRR TLERD + CGSVSAKGY  GF+S APRF+D+N LQQA+LPGPGSY A+ V  G     +L SFS+LKR+          VPGPGEYN D  NR+   ++       PTSSFLC R  L+VG ++ TPAPG YEL  TQQ  V K G  LKD FFRS T+R+ +FI  S+VPGPGEY+VDR  A   EA+   G R         GR +++ +            VTPGPGWYTPHQT+PPE+  SSSSMFRS TKRFA T    APGPAFYQP+PL KKSFRWN  KQW+
Sbjct:  502 NDVPPPGAYYRRSTLERDGKVCGSVSAKGYGTGFVSNAPRFKDLNTLQQAYLPGPGSYTAEDVQEG----TKLTSFSSLKRDLGI-------VPGPGEYNIDRGNRNNTTNKNRAGAPNPTSSFLCARTPLNVGTHLETPAPGTYELLPTQQSHVDKSGNALKDPFFRSQTRRNASFIAASDVPGPGEYDVDRGVANSTEALGSGGGR----GXXXXGRPSQQLRXXXXXXXXXXXEVTPGPGWYTPHQTKPPERFLSSSSMFRSATKRFAGTGPPGAPGPAFYQPEPLGKKSFRWNATKQWV 789          
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: L1K036_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K036_GUITC)

HSP 1 Score: 76.3 bits (186), Expect = 4.020e-12
Identity = 82/336 (24.40%), Postives = 126/336 (37.50%), Query Frame = 1
Query:    1 TQNDVPPPGAYYRRPTLERDARWCGSVSAKGYCGGFLSAAPRFRDVNMLQQAHLPGPGSYD---------AQVDTGYDGAARLASFSNLKRNCRFTPNSTTDVPGPGEYNPDCKNRHRDVSRPTSSFLCQRRSLHVGPNVVTPAPGA----YELARTQQGKVGKDGAILKDHFFRSGTKRDLTF--------------------------------IPPSEVPGPGEYEVDRRTATRMEAIVKRGERTTVQAGA-KIGRSTERSKDDEFVTPGPGWYTPHQTQPPEKASSSSSMFRSGTKRFARTRV-VVAPGPAFYQPDPLEKKSFRWNGKKQWI 867
            ++N++P PG YY+  T + +     S S KGY G  +S + RF   +  ++A  P PGSYD         ++ D  +  +             +   ++ T  PGPG+Y           +     F       H          GA    YE      G   +    +    FRS T R   +                                + P  +PGPG Y  + R A        R   T V +   +  +  E+ K     TPGPG Y   + Q  +K  ++ S F S T+R    +   VAPGPA+Y P+ + KKSF +N  ++W+
Sbjct:   42 SENELPGPGQYYKPKTNQTNP----SQSVKGYTG-MVSKSQRF---SRPRRATAPCPGSYDPVRGFLAVHSRKDFNFGASRAFCQPIVSPDYVKGRRSNNTTGPGPGQYEASVDLTSPRYAGKKVPFSSGTERFHELKKAYGTGEGAGEYDYESIARITGAFNELNKKVPSAAFRSRTGRKFDYMRASRDNPLDALKPHPSLGPSLGIHVDIKPNQLKPEMMPGPGYY--NPRAAEEYSLQKLRHSATFVPSKQDRFAQPAEKYK----ATPGPGAYEVLKDQS-QKVEATMSAFVSSTEREVDIKARTVAPGPAYYNPNVIRKKSFHYNSNQRWV 362          
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: UPI001BE9593D (O(6)-methylguanine-induced apoptosis 2 n=1 Tax=Chelmon rostratus TaxID=109905 RepID=UPI001BE9593D)

HSP 1 Score: 74.7 bits (182), Expect = 1.080e-11
Identity = 84/292 (28.77%), Postives = 118/292 (40.41%), Query Frame = 1
Query:    7 NDVPPPGAYYRRPTLERDARWCGSVSAKGYCGGFLSAAPRFRDVNMLQQAHLPGPGSYDAQ--VDTGYDGAARLASFSNLKRNCRFT-PNSTTDVPGPGEYNPDCKNRHRDVSRP-TSSFLCQRRSLHVGPNVVTPAPGAYELARTQQGKVGKDGAILKDHFFRSGTKRDLTFIPPSEVPGPGEYEVDRRTATRMEAIVKRGERTTVQAGAKIGRSTERSKDDEFVTPGPGWYTPHQTQPPEKASSSSSMFRSGTKRFART-RVVVAPGPAFYQPDPLEKKSFRWNGKKQWI 867
            N+ P PG+Y      E  +    S S KG  G   S A R        Q   PGP +Y+ Q  +   YD    ++    L    +   P   T  P P +++  C  R R  S   TS+FL +       PN   P+P  YE+       V + G++     F+S T+R    +    VPGPG Y   +  A     I+ RG    + A   +       KD     PGPG Y         K    ++ F S T+R  R  +  + PGP FY P  L K+SF +N  + WI
Sbjct:   54 NENPGPGSYGCISNAEVRSP---SFSKKGTTGFVASKAAR---ATRNPQRGTPGPNAYNLQSCLINKYDFNIGVSRVFRLPVAVQLDGPKHNT--PAPNQFDVCCGGRQRFSSVVGTSAFLSKTGRDSFYPNKNVPSPCHYEV----NDNVIQHGSMAVLSPFKSKTQRIPAPVDYG-VPGPGAYSPHQTPAPVKRTILPRGYYLAISAPPLMV-----PKDPPL--PGPGQYDIGNYNRSSKHPIPTAAFASRTERIPRNAQADMRPGPGFYDPQILSKRSFFYNESRVWI 325          
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: UPI001C08000B (O(6)-methylguanine-induced apoptosis 2 isoform X1 n=2 Tax=Alosa TaxID=34772 RepID=UPI001C08000B)

HSP 1 Score: 73.9 bits (180), Expect = 2.000e-11
Identity = 83/292 (28.42%), Postives = 123/292 (42.12%), Query Frame = 1
Query:    7 NDVPPPGAYYRRPTLERDARWCGSVSAKGYCGGFLSAAPRFRDVNMLQQAHLPGPGSYDAQVDTGYDGAARLASFSNLKRNCRFTPNSTTD-VPGPGEYNPDCKNRHRDVSRPTSS-FLCQ-RRSLHVGPNVVTPAPGAYELARTQQGKVGKDGAILKDHFFRSGTKRDLTFIPPSEVPGPGEYEVDRRTATRMEAIVKRGERTTVQAGAKIGRSTERSKDDEFVT-PGPGWYTPHQTQPPEKASSSSSMFRSGTKRFART-RVVVAPGPAFYQPDPLEKKSFRWNGKKQWI 867
            N+ P PGAY      E ++    S S KG  GGF S A R   V+      +PGP +Y+ Q            S  N +       +S T   P P +YN       +  +    S FL + +R++     +  P+P  Y +  T   K  K    +    F+S   R+   +  SE PGPG Y        ++  +VKR   T +     +G S    K  E    PGPG Y     +   K   S++ F SGT R+ +  +    PGP FY P+ + K+SF +N +K W+
Sbjct:   55 NENPGPGAYLSHTPAENNSP---SFSKKG-TGGFASKAHR---VSRNLHRGIPGPNAYNLQSSLLPKHTFLRGSTRNFRLPIAVKLDSVTKGTPAPNQYNVSYGGVDKSTTISAHSVFLSKTKRNMANLNGLKGPSPCHYNVNDTITQKDPK----VPYSCFKSNIARNPLPLK-SEGPGPGAYN-----PYQIPEMVKR---TILPRRHYLGLSAPPLKLSENPPLPGPGQYDIVNYEGSPKHFMSTAAFVSGTSRWVQNPKGHDVPGPGFYDPEIMSKRSFIYNHRKNWV 326          
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: A0A8C5BUV7_GADMO (Sperm-tail PG-rich repeat containing 1 n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5BUV7_GADMO)

HSP 1 Score: 68.6 bits (166), Expect = 1.390e-9
Identity = 81/297 (27.27%), Postives = 120/297 (40.40%), Query Frame = 1
Query:    1 TQNDVPPPGAYYRRPTLERDARWCGSVSAKGYCGGFLSAAPRFRDVNMLQQAHLPGPGSYDAQVDTGYDGAARLASFSNLKRNCR-------FTPNSTTDVPGPGEYNPDCKNRHRD---VSRPTSSFLCQRRSLHVGPNVVTPAPGAYELARTQQGKVGKDGAILKDHFFRSGTKRDLTFIPPSEVPGPGEYEVDRRTATRMEAIVKRGERTTVQAGAKIGRSTERSKDDEFVTPGPGWYTPHQTQPPEKASSSSSMFRSGTKRFAR--TRVVVAPGPAFYQPDPLEKKSFRWNGK 855
            T N+ P PG+Y   P+ E    +  S S KG    F S  PR   V    +  LPGP SY+ Q  +     AR +      R  R         P   T  PGP +Y  D    H      S+ +S+FL + +   +  N   P+P  Y+++ T      K+        F+S + R    +    VPGPG Y +        +  + R +   +   A++       K   +  PGPG Y     + P     S++ F S T+R  +        PGP +Y+P  L KKSF +N K
Sbjct:   49 TLNENPGPGSYCPLPSAET---FSPSFSKKGTTS-FPSKVPR---VPRHHKRGLPGPDSYNLQSSS----IARHSFGRGASRAFRAPVAVPVLGPKFRT--PGPDQY--DVSGGHPGGSFQSKGSSTFLSKTKRCDLAINPNLPSPCHYQISCTAT----KNSPRAAMSPFKSKSSRFPAQVD-HRVPGPGAYNLHHSPDPLRKPTLLRRKVLVMATPARLV-----PKGPAY--PGPGQYDLVDYEGPSSHPGSTAAFLSETRRSPQGGRAPQAGPGPGYYEPQKLSKKSFLYNPK 318          
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: A0A7S1XXV1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXV1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.480e-9
Identity = 83/340 (24.41%), Postives = 110/340 (32.35%), Query Frame = 1
Query:   13 VPPPGAYYR-RPTLERDARWCGSVSAKGYCGGFLSAAPRFRDVNMLQQAHLPGPGSYDAQVDTGYDGAARLASFSNLKRNCRFTPNSTTDVPGPGEYNPDCKNRHRDVSRPTSSFLCQRRSLHVGPNVVTPAP-------------------------------------GAYELARTQQGKVGKDGAILKDHFFRSGTKRDLTFIPPSEVPGPGEYEVDRRTATRMEAIVKRGERTTVQAGAKIGRSTERSKDDEFV-------TPGPGWYTPHQTQPPEKASSSSSM----------FRSGTKRFARTRVVVAPGPAFYQPDPLEKKSFRWNGKKQWI 867
            VP PG+YY+ R    RD   CGSVS KG+ GGF+S   RF D   L+ A  PGPG+YD                  L     F PN+    P    + P  K+R  D   P  +                                                        GA   A  + GK  +  A  K    R     D         P      VD+      + +++    + +++ A    +  R    +          PGPG Y          A +SS            F SG+KR        APGPAFY P    KKSF  N K +W+
Sbjct:   96 VPGPGSYYKPRNHWIRDPSTCGSVSKKGFGGGFISKTTRFTDRGELESALAPGPGAYDP-----------------LTAQPLFNPNN--QAPTSSMFAPAKKSRLEDALGPVGTVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYEVGAASDALHRFGKNEEPNAAFKSQSLRG---IDAEIRAKRAQPXXXXXXVDQ-----ADLLMRTDVSSRLRSSAAFQNNARRFGGPQSALAAGPADVPGPGAYGVSAVGSIANAGTSSLADGLRKKSGYGFGSGSKRNTVDIKREAPGPAFYTPSAPPKKSFLMNSKMRWV 408          
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: A0A7S0X611_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X611_9CHLO)

HSP 1 Score: 64.7 bits (156), Expect = 3.730e-8
Identity = 89/339 (26.25%), Postives = 126/339 (37.17%), Query Frame = 1
Query:   10 DVPPPGAYYRRPTLERDARWCGSVSAKGYCGGFLSAAPRF-RDVNMLQQAHLPGP-GSYDAQV---DTGYDGAARLASFSNLKRNCRFTPNSTTDV---PGPGEYNPDCKNRH--RDVSRP-TSSFLCQRRSLHVGPNVVTPAPGAYEL----------ARTQQGKVGKDGAILKD---------HFFRSGTK------RDLTFIPPSEVPGPGEYEV--DRR-TATRMEAIVKRGERTTVQAGAKIGRSTERSKDDEF-----------VTPGPGWYTPHQTQPPEKASSSSSMFRSGTKRF---ARTRVVVAPGPAFYQPDPLEKKSFRWNGKKQWI 867
            D P PGAY          +   S+S KGY  GF+S   R  R      ++  PG  GS  A++    T ++ A    SF+    N          V   PGPG Y          + V R  T  F  +R S     +   P+PG Y +           R+      K  + L           H  RSG+       RD   +  S  PGPG+Y    DR  TA R+           +Q   K   +  R+ DD F           V PGPG Y            + +  F+S + R     R    + PGPAFY P  +++KSF  N +++++
Sbjct:   69 DYPGPGAYTTDGQASTMVKSLESLSKKGYGNGFVSGERRLPRSPGEYFRSPGPGAYGSGAARMLVSKTDFNRAKSTGSFARPLENVGPPLEPRVAVRPPPGPGAYTIRAAGAAGVKSVFRSGTERFGSERASAA---SASMPSPGTYNVHVVASSFRSDTRSAPSAAFKSTSRLDSAGQAGGSGSHARRSGSGAPSIIYRDTENVGASGAPGPGQYGYGFDREETAYRL----------LIQRAGKSSAAFARTSDDRFGHSTLNRVVSCVAPGPGQYAVSGALGYGDHRAVTGPFKSTSARSDPNGRKATSLPPGPAFYSPASVDRKSFHLNAQRRFM 394          
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: A0A5J4VH88_9EUKA (Uncharacterized protein n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4VH88_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 6.960e-6
Identity = 86/308 (27.92%), Postives = 110/308 (35.71%), Query Frame = 1
Query:   58 DARWCGSVSAKGYCGGFLSAAPRFRDVNMLQQAHLPGPGSYDAQVDTGYDGAARLASFSNLKRNCRFTPNSTTDVPGPGEYNP------DCKNRHRDVSRPTSSFLCQRRSLHVGPN-VVTPAPGAYELARTQQGKVGKDGAILKDH---------------FFRSGTKRDLTFIPPSEV--PGPGEYEVDRRTATRME-----------AIVKRGERTTVQAGAKIGRSTERSKDDEF----------VTPGPGWYTPHQTQPPEKASSSSSMFRSGTKRFARTRVVVAPGPAFY--QPDPLEKKSF 840
            D+R  G +  +G  G   SA+     V        PGPG+Y+ +          +  FS      RFT +STT+VPGPG YNP           H   +  TSS      S+   PN       G  + +    G+ G  G     H                F SGT R  T    SE   PGPG Y+  + ++ R E           + V  G     Q    IG          F          V PGPG YTP            S+ F+S   RF   R+   PGP  Y  QP  L K+SF
Sbjct:  285 DSRKGGGIRGRGLLGTGKSASEIGYSV--------PGPGAYE-EPRLLIPKPPSMHPFSQTSS--RFT-SSTTEVPGPGNYNPIRPDSPSFTTTHPTCANTTSSAF-GASSMRFDPNQAAVGIQGGAKASFVMGGRNGVPGPGAYTHEDALVTVFRRRHPTSSFTSGTSRFYT----SETLPPGPGAYKT-KDSSIRFEPQLTLTGEIHPSSVFIGPPRDKQVAGMIGIGDGAGGGFTFGKNGMNSSGIVVPGPGAYTPDLISAQSSIGVKSTGFQSTQSRFG-DRLADIPGPGAYEVQPPELIKRSF 573          
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Match: Q22UQ0_TETTS (Sperm-tail PG-rich repeat protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q22UQ0_TETTS)

HSP 1 Score: 57.0 bits (136), Expect = 1.200e-5
Identity = 56/230 (24.35%), Postives = 96/230 (41.74%), Query Frame = 1
Query:  160 LPGPGSYDAQVDTGYDGAARLASFSNLKRNCRFTPNSTTDVPGPGEYNPDCKNRHRDVSRPTSSFLCQRRSLHVGPNVVTPAPGAYELARTQQGKVGKDGAILKDHFFRSGTKRDLTFIPPSEVPGPGEYEVDRRTATRMEAIVKRGERTTVQAGAKIGRSTERSKDDEFVTPGPGWYTPHQTQPPEKASSSSSMFRSGTKRFARTRVVVAPGPAFYQPDPLEKKSFRWN 849
             PGPG+Y    D+ +  ++R    S + R+ R   +     P P EYNP+  + +R  +   + F   +R            PG Y L  +      K  + +K   F   + R+LT +P SE PGPG+Y   ++   +           TV + A++   T      + V PG G Y     Q  ++  S  ++F S  + + + + + AP  A++ P   +    R N
Sbjct:   87 FPGPGTYMPNYDSIFPNSSR----STIPRSPREL-SKHEKKPDPCEYNPNQADIYRRKNSGNTKFSLDKRKFFTIKTEYDLGPGQYNLDSSFT--PNKSLSSVKQISFTK-SDRNLTNLPLSEEPGPGQYNPQKQQLYK----------NTVFSQARLDDKTSMYAIHQ-VNPGVGTYNVELNQ--QQKQSPRAVFSSEKRFYVQEKAIPAPN-AYHIPSKFDSYIRREN 294          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14802.3237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L4U5_9PHAE2.640e-10854.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJS9_ECTSI6.910e-10156.77Peptide chain release factor n=1 Tax=Ectocarpus si... [more]
L1K036_GUITC4.020e-1224.40Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
UPI001BE9593D1.080e-1128.77O(6)-methylguanine-induced apoptosis 2 n=1 Tax=Che... [more]
UPI001C08000B2.000e-1128.42O(6)-methylguanine-induced apoptosis 2 isoform X1 ... [more]
A0A8C5BUV7_GADMO1.390e-927.27Sperm-tail PG-rich repeat containing 1 n=1 Tax=Gad... [more]
A0A7S1XXV1_9STRA1.480e-924.41Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0X611_9CHLO3.730e-826.25Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A5J4VH88_9EUKA6.960e-627.92Uncharacterized protein n=1 Tax=Streblomastix stri... [more]
Q22UQ0_TETTS1.200e-524.35Sperm-tail PG-rich repeat protein n=1 Tax=Tetrahym... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14802contigH-elongata_contig14802:439..2343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score321.2
Seed ortholog evalue4.8e-85
Seed eggNOG ortholog2880.D7FJS9
KEGG rclassRC00064,RC00090,RC00162
KEGG koko:K01930,ko:K02836
KEGG ReactionR00942,R02237,R04241
KEGG Pathwayko00790,ko01100,ko01523,map00790,map01100,map01523
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003730,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006412,GO:0006415,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010608,GO:0016043,GO:0016070,GO:0016149,GO:0019219,GO:0019222,GO:0019538,GO:0022411,GO:0031323,GO:0031329,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043487,GO:0043488,GO:0043565,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903311
EggNOG free text desc.translation release factor activity
EggNOG OGsCOG0216@1,KOG2726@2759
EC6.3.2.17
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03012
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionpeptide chain release factor
Ec32 orthologEc-06_010300.1
Exons3
Model size870
Cds size870
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14802.3237.1prot_H-elongata_contig14802.3237.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14802 439..2343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929877.0086207-CDS-H-elongata_contig14802:438..6841622929877.0086207-CDS-H-elongata_contig14802:438..684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14802 439..684 +
1691679192.095652-CDS-H-elongata_contig14802:438..6841691679192.095652-CDS-H-elongata_contig14802:438..684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14802 439..684 +
1622929877.0240002-CDS-H-elongata_contig14802:1322..17551622929877.0240002-CDS-H-elongata_contig14802:1322..1755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14802 1323..1755 +
1691679192.106462-CDS-H-elongata_contig14802:1322..17551691679192.106462-CDS-H-elongata_contig14802:1322..1755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14802 1323..1755 +
1622929877.038765-CDS-H-elongata_contig14802:2152..23431622929877.038765-CDS-H-elongata_contig14802:2152..2343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14802 2153..2343 +
1691679192.114503-CDS-H-elongata_contig14802:2152..23431691679192.114503-CDS-H-elongata_contig14802:2152..2343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14802 2153..2343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14802.3237.1

>prot_H-elongata_contig14802.3237.1 ID=prot_H-elongata_contig14802.3237.1|Name=mRNA_H-elongata_contig14802.3237.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=290bp
TQNDVPPPGAYYRRPTLERDARWCGSVSAKGYCGGFLSAAPRFRDVNMLQ
QAHLPGPGSYDAQVDTGYDGAARLASFSNLKRNCRFTPNSTTDVPGPGEY
NPDCKNRHRDVSRPTSSFLCQRRSLHVGPNVVTPAPGAYELARTQQGKVG
KDGAILKDHFFRSGTKRDLTFIPPSEVPGPGEYEVDRRTATRMEAIVKRG
ERTTVQAGAKIGRSTERSKDDEFVTPGPGWYTPHQTQPPEKASSSSSMFR
SGTKRFARTRVVVAPGPAFYQPDPLEKKSFRWNGKKQWI*
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mRNA from alignment at H-elongata_contig14802:439..2343+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14802.3237.1 ID=mRNA_H-elongata_contig14802.3237.1|Name=mRNA_H-elongata_contig14802.3237.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1905bp|location=Sequence derived from alignment at H-elongata_contig14802:439..2343+ (Himanthalia elongata Himel1 dioecious)
ACACAGAACGATGTGCCCCCACCGGGAGCTTACTATCGACGCCCAACTCT CGAGCGAGACGCGAGATGGTGTGGGTCGGTCTCTGCCAAAGGATACTGCG GTGGTTTCCTGTCGGCAGCCCCACGTTTCCGTGACGTAAATATGCTGCAG CAAGCACATCTACCGGGCCCAGGATCGTACGATGCGCAGGTGGACACGGG GTATGACGGAGCAGCGCGACTGGCGTCGTTCTCAAACTTGAAGCGGGTGA GATAACAACAAAGGAGGGTTTTCGTGTCCGTGACACCGAAGACAGGCTAT CACAAACGAGACGCAATTATCACGATCAATGCTGCCGATGGCATTATTTC TCTTCCTGGCGGTGGGTGTGAATCCACAATTACACCGTGATTTGCGGCCG ACACATGGGGAAACGACTGTCACAGTGTCTTGTGGCGTGTAGCTAAGCTC CTTTCAAAGGAGTGTGGCCTCGCAAACGTCTAACGGTTTTCCATCCAATA CAGCGGGAAATTGGGGAAAACTGGTTTGAAAGAATTCCCGCAGCAGACGG GGGCTGATTCTTGAACTAGCGATCAGAGCATTGACACTAAAGATAGAGTA TCGCTTGTCTCGGCATTCGTCTGACGCAATTTTGCTAGGGTGAAGTATGT TTCGCACTGATTACACTTGGCTGTAACTAGAGTCAAGTCTTCTTACTCCT GTTCACAGTCCCGCCCGGCCCACAACAAGTACGTATCCTGGTTAGGACAT CATCCGAAATGTACGCCCAACACCGAAGTGGTATCAACGCCTTCGGTTCC ACTCAACCATCCTGAGCGAGCGAAGCTCACAAAGCGTACGTCGATTGAAT TTTAGTCTGAACGTCTGCCCGCGCCACCCCGTAGAATTGCAGATTTACGC CCAACTCAACGACGGATGTGCCAGGACCAGGGGAGTACAACCCCGATTGC AAGAATCGTCACAGAGATGTATCGAGGCCGACGTCTTCGTTTCTGTGTCA GCGGAGGTCTCTGCACGTCGGCCCGAACGTCGTGACGCCCGCCCCGGGAG CGTACGAACTTGCTCGGACCCAGCAGGGGAAGGTTGGCAAAGACGGCGCT ATCCTAAAAGATCATTTCTTCAGGTCGGGTACCAAGCGAGATCTAACGTT CATTCCCCCGAGTGAAGTTCCTGGGCCCGGGGAGTACGAGGTTGATCGAA GGACAGCGACGAGAATGGAGGCGATAGTAAAGAGAGGGGAAAGAACTACG GTCCAGGCCGGAGCTAAGATTGGGCGATCAACGGAACGTTCGAAGGATGA CGAGTTTGTCACCCCCGGTAAGTTGACGTGAACTCCCTCGTACGGCACAT CTTCCATACATGGTCAACTGTTTCTCGTTATTTGCTTCACTTTATACACC TTTGTGATGGCGCTATAGTAAGCGTAGTTTACACCACGGGGGGAAATTGT ATCGATCCGTGAATCAGCAGGTTGTCGGCAAATTATTCCTAGCAGAGTGT ATGTGTATGGATGGTAACGACCATGACATTTATTTGCTATCCACAGCCGT ATATACGGGGTAGGTGCCCAGAGCGTCAAGCCAATTGACTGGCAGCAATT TTCAATGTTCCTCCGGCGACTATAAAAAGTATTTCCACCCTTCAGCGACG AGCGATATCTAACAAACGTTTCAGCTCTTTTTATGCCATGTCGCCCCACA AAAATTCACCATAGGACCTGGTTGGTACACCCCACACCAGACACAGCCAC CCGAGAAAGCATCTTCTTCCTCGAGCATGTTCCGGTCAGGGACGAAACGC TTCGCGAGAACGAGGGTTGTCGTAGCACCGGGACCTGCCTTCTACCAACC AGATCCACTGGAGAAGAAATCCTTCCGTTGGAATGGGAAGAAGCAGTGGA TCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig14802:439..2343+

>mRNA_H-elongata_contig14802.3237.1 ID=mRNA_H-elongata_contig14802.3237.1|Name=mRNA_H-elongata_contig14802.3237.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1740bp|location=Sequence derived from alignment at H-elongata_contig14802:439..2343+ (Himanthalia elongata Himel1 dioecious)
ACACAGAACGATGTGCCCCCACCGGGAGCTTACTATCGACGCCCAACTCT
CGAGCGAGACGCGAGATGGTGTGGGTCGGTCTCTGCCAAAGGATACTGCG
GTGGTTTCCTGTCGGCAGCCCCACGTTTCCGTGACGTAAATATGCTGCAG
CAAGCACATCTACCGGGCCCAGGATCGTACGATGCGCAGGTGGACACGGG
GTATGACGGAGCAGCGCGACTGGCGTCGTTCTCAAACTTGAAGCGGACAC
AGAACGATGTGCCCCCACCGGGAGCTTACTATCGACGCCCAACTCTCGAG
CGAGACGCGAGATGGTGTGGGTCGGTCTCTGCCAAAGGATACTGCGGTGG
TTTCCTGTCGGCAGCCCCACGTTTCCGTGACGTAAATATGCTGCAGCAAG
CACATCTACCGGGCCCAGGATCGTACGATGCGCAGGTGGACACGGGGTAT
GACGGAGCAGCGCGACTGGCGTCGTTCTCAAACTTGAAGCGGAATTGCAG
ATTTACGCCCAACTCAACGACGGATGTGCCAGGACCAGGGGAGTACAACC
CCGATTGCAAGAATCGTCACAGAGATGTATCGAGGCCGACGTCTTCGTTT
CTGTGTCAGCGGAGGTCTCTGCACGTCGGCCCGAACGTCGTGACGCCCGC
CCCGGGAGCGTACGAACTTGCTCGGACCCAGCAGGGGAAGGTTGGCAAAG
ACGGCGCTATCCTAAAAGATCATTTCTTCAGGTCGGGTACCAAGCGAGAT
CTAACGTTCATTCCCCCGAGTGAAGTTCCTGGGCCCGGGGAGTACGAGGT
TGATCGAAGGACAGCGACGAGAATGGAGGCGATAGTAAAGAGAGGGGAAA
GAACTACGGTCCAGGCCGGAGCTAAGATTGGGCGATCAACGGAACGTTCG
AAGGATGACGAGTTTGTCACCCCCGAATTGCAGATTTACGCCCAACTCAA
CGACGGATGTGCCAGGACCAGGGGAGTACAACCCCGATTGCAAGAATCGT
CACAGAGATGTATCGAGGCCGACGTCTTCGTTTCTGTGTCAGCGGAGGTC
TCTGCACGTCGGCCCGAACGTCGTGACGCCCGCCCCGGGAGCGTACGAAC
TTGCTCGGACCCAGCAGGGGAAGGTTGGCAAAGACGGCGCTATCCTAAAA
GATCATTTCTTCAGGTCGGGTACCAAGCGAGATCTAACGTTCATTCCCCC
GAGTGAAGTTCCTGGGCCCGGGGAGTACGAGGTTGATCGAAGGACAGCGA
CGAGAATGGAGGCGATAGTAAAGAGAGGGGAAAGAACTACGGTCCAGGCC
GGAGCTAAGATTGGGCGATCAACGGAACGTTCGAAGGATGACGAGTTTGT
CACCCCCGGACCTGGTTGGTACACCCCACACCAGACACAGCCACCCGAGA
AAGCATCTTCTTCCTCGAGCATGTTCCGGTCAGGGACGAAACGCTTCGCG
AGAACGAGGGTTGTCGTAGCACCGGGACCTGCCTTCTACCAACCAGATCC
ACTGGAGAAGAAATCCTTCCGTTGGAATGGGAAGAAGCAGTGGATCTGAG
ACCTGGTTGGTACACCCCACACCAGACACAGCCACCCGAGAAAGCATCTT
CTTCCTCGAGCATGTTCCGGTCAGGGACGAAACGCTTCGCGAGAACGAGG
GTTGTCGTAGCACCGGGACCTGCCTTCTACCAACCAGATCCACTGGAGAA
GAAATCCTTCCGTTGGAATGGGAAGAAGCAGTGGATCTGA
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