mRNA_H-elongata_contig147817.3227.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147817.3227.1
Unique NamemRNA_H-elongata_contig147817.3227.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig147817.3227.1 vs. uniprot
Match: D7FSF6_ECTSI (Diphthine--ammonia ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSF6_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 1.350e-77
Identity = 113/143 (79.02%), Postives = 129/143 (90.21%), Query Frame = 1
Query:    1 ITDVLAQARHERLDALVVPLGGGTGPYPDSYAVTLKAALKPLRVKALAFGDLHLQELRSWREDTFSGAYPCEFPLFEVPYEELLARLWAE--KGVALRLCAVSTQHEGLEGLSKGDVYCKAFIKRLPEGVDAMGENGEFHTHV 423
            ITDVL QARHE +D L VPLGGG+GP+PD+Y+VTLKAALKPLRVKALAFGDLHLQEL+SWR+D FSGAYPCEFPLFEVPYEELL+RLW E   GV L++ +VST H+GLEG+S GDVYC+AF+KRLP+ VDAMGENGEFHTHV
Sbjct:  163 ITDVLEQARHEGVDLLAVPLGGGSGPFPDAYSVTLKAALKPLRVKALAFGDLHLQELKSWRQDVFSGAYPCEFPLFEVPYEELLSRLWEEIAAGVTLKVSSVSTDHKGLEGISVGDVYCEAFVKRLPDIVDAMGENGEFHTHV 305          
BLAST of mRNA_H-elongata_contig147817.3227.1 vs. uniprot
Match: A0A835YXG3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXG3_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.630e-36
Identity = 77/151 (50.99%), Postives = 94/151 (62.25%), Query Frame = 1
Query:    1 ITDVLAQARHERLDALVVPLGGG-----TGPYPDSYAVTLKAALKPL--RVKALAFGDLHLQELRSWREDTFSGAYPCEFPLFEVPYEELLARLWAEKGVALRLCAVSTQHEGL--EG-LSKGDVYCKAFIKRLPEGVDAMGENGEFHTHV 423
            I DV+ QA+  ++D L VPL GG      GPY D+    + AAL+P   R++AL FGDLHL ++R+WRE TF+  YPC FPLF  PY EL ARLWAE         VS   + L  +G L  G  Y  AF+  LP+GVD MGENGEFHTHV
Sbjct:  155 IRDVMDQAKALQVDLLAVPLKGGEASTGAGPYVDA----VMAALEPFKQRIRALCFGDLHLVDIRAWREATFTDTYPCRFPLFNTPYAELKARLWAEAERGTISVTVSAVRDDLLEQGPLRIGAQYDAAFVGALPQGVDEMGENGEFHTHV 301          
BLAST of mRNA_H-elongata_contig147817.3227.1 vs. uniprot
Match: A0A345YEE0_9SPHN (Diphthami_syn_2 domain-containing protein n=1 Tax=Erythrobacter aureus TaxID=2182384 RepID=A0A345YEE0_9SPHN)

HSP 1 Score: 100 bits (250), Expect = 3.000e-23
Identity = 62/146 (42.47%), Postives = 79/146 (54.11%), Query Frame = 1
Query:    1 ITDVLAQARHERLDALVVPLGGGTGPYPDSYAVTLKAALKPLRVKALAFGDLHLQELRSWREDTF-----SGAYPCEFPLFEVPYEELLARLWAEKGVALRLCAVSTQHEGLEGLSKGDVYCKAFIKRLPEGVDAMGENGEFHTHV 423
            I +V+AQA H  L  + VPL  G   Y D  A  L  AL P     L FGDLHL  +RSWRE+ F     +      FPL++  Y  LLA+L A   +    CA+S     LE +S GD++    + +LP G+DA GENGEFHT V
Sbjct:  129 IAEVVAQAEHLGLPLIGVPLQSGPD-YLDQVAPAL--ALVP-GCSGLCFGDLHLTHIRSWREEAFRKHPATSGMQLSFPLWQQDYALLLAKLAASGAI----CAISAVRHDLESVSVGDIFDANCVAKLPRGIDAFGENGEFHTRV 266          
BLAST of mRNA_H-elongata_contig147817.3227.1 vs. uniprot
Match: A0A6I7QBU6_9BACT (Diphthami_syn_2 domain-containing protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6I7QBU6_9BACT)

HSP 1 Score: 97.8 bits (242), Expect = 9.600e-23
Identity = 57/147 (38.78%), Postives = 81/147 (55.10%), Query Frame = 1
Query:    1 ITDVLAQARHERLDALVVPLGGGTGPYPDSYAVTLKAALK-----PLRVKALAFGDLHLQELRSWREDTFSG-AYPCEFPLFEVPYEELLARLWAEKGVALRLCAVSTQHEGLEGLSKGDVYCKAFIKRLPEGVDAMGENGEFHTHV 423
            I  V  QA    L    VPL      YP S    LK   K     P  +  L FGDLHL+++R WRE+ FS   Y C FP+++ PYEEL  RL  E+ V++++  V ++++G   +  GD++ + +   LP+ +D MGE GEFHT V
Sbjct:   56 IRRVQNQAMKLGLILYTVPLS-----YPSSNEQYLKTLSKSFEQLPFSIHHLIFGDLHLEDIRKWREEQFSEMGYKCRFPIWKKPYEELFDRL-EEENVSIKVSGVMSEYDGY--IKPGDLFTREYAHSLPKQIDRMGEKGEFHTEV 194          
BLAST of mRNA_H-elongata_contig147817.3227.1 vs. uniprot
Match: A0A1X6PBK6_PORUM (Diphthine--ammonia ligase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PBK6_PORUM)

HSP 1 Score: 97.1 bits (240), Expect = 4.110e-21
Identity = 65/147 (44.22%), Postives = 79/147 (53.74%), Query Frame = 1
Query:    7 DVLA-QARHERLDALVVPLGGGTGPYPDSYAVTLKAAL-------KPLRVKALAFGDLHLQELRSWREDTFSGAYPCEFPLFEVPYEELLARLWAEKGVALRLCAVSTQHEGLEGLSKGDVYCKAFIKRLPEGVDAMGENGEFHTHV 423
            DV+A QA    L  + VPL  G      SY   ++A +       + L V A  FGDLHL  +R WRE  F G     FPL+ VPY EL  RL A  G  +RL AV  +     G++ GDV+  A + RLP GVDA GENGEFHT V
Sbjct:  229 DVVARQAVALHLPLVAVPLPSGGAGAGTSYGDRIRAVVGWLAAPPRRLAVGAFVFGDLHLAHIREWREAEFVGV-ALRFPLWRVPYAELGRRLVAA-GHPVRLTAVEDEACVAAGVAVGDVFDAALVARLPPGVDAWGENGEFHTVV 373          
BLAST of mRNA_H-elongata_contig147817.3227.1 vs. uniprot
Match: A0A1Y2C0D4_9FUNG (Diphthine--ammonia ligase (Fragment) n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2C0D4_9FUNG)

HSP 1 Score: 94.7 bits (234), Expect = 3.200e-20
Identity = 62/168 (36.90%), Postives = 91/168 (54.17%), Query Frame = 1
Query:    1 ITDVLAQARHERLDALVVPLGGGTGPYPDSYAVTLKAALKPLR-------------VKALAFGDLHLQELRSWREDTFSGAYPCEFPLFEVPYEE-LLARLWA---EKGVALRLCAVSTQ-------HEGLEGLSKGDV-YCKAFIKR--LPEGVDAMGENGEFHTHV 423
            I D+ AQ+    L  L+VP G  +    ++Y  T+  AL+ L              ++ L FGDL L+++R+WRE +FS  YPC FPLFE+ +++ L+ RLW    E  + +   A+  +        EGLE   +G+V Y K+ ++R   PE VD MGE GEFHT V
Sbjct:  220 IGDISAQSSCLNLPLLLVPRGADSK--NETYIKTITDALEQLSREMSALDSSKSSTIQYLVFGDLFLEDIRAWRESSFSNLYPCRFPLFELDFQKNLMPRLWELCEEYEIRISFSAMENEVMKKWVNDEGLEKDDEGNVRYTKSLVERSDFPETVDLMGERGEFHTKV 385          
BLAST of mRNA_H-elongata_contig147817.3227.1 vs. uniprot
Match: A0A358DN45_9DELT (Diphthami_syn_2 domain-containing protein n=2 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A358DN45_9DELT)

HSP 1 Score: 91.7 bits (226), Expect = 1.010e-19
Identity = 60/149 (40.27%), Postives = 84/149 (56.38%), Query Frame = 1
Query:    7 DVLAQA-RHER----LDALVVPLGGGTGPYPDSYAVTLKAALKPLRVKALAFGDLHLQELRSWREDTFSG-----AYPCEFPLFEVPYEELLARLWAEKGVALRLCAVSTQHEGLEGLSKGDVYCKAFIKRLPEGVDAMGENGEFHTHV 423
            +VL Q  RH+R       ++VPL  GTG Y D   + ++       V  L FGDLHL  +R+WRED FS      + P   PL+ +PYEELL  L +   V  R+ AV+ +    + +S GD++ +  I RLP+G DA GENGEFH+ +
Sbjct:  122 EVLVQEIRHQRKRLGCAQVLVPLFPGTG-YMDRVLLGIQTLQFRTPVARLVFGDLHLDHVRTWREDAFSACSDIASIPIHLPLWGIPYEELLNDLESAP-VQARVSAVADE-TCAQVISVGDLFNRDLIARLPKGTDAFGENGEFHSCI 267          
BLAST of mRNA_H-elongata_contig147817.3227.1 vs. uniprot
Match: A0A7X4E254_9BACT (Diphthami_syn_2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4E254_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 8.090e-19
Identity = 60/145 (41.38%), Postives = 80/145 (55.17%), Query Frame = 1
Query:    1 ITDVLAQARHERLDALVVPLGGGTGPYPDSYAVTLKAALKPLRVKALAFGDLHLQELRSWREDTFS------GAYPCEFPLFEVPYEELLARLWAEKGVALRLCAVSTQHEGLEGLSKGDVYCKAFIKRLPEGVDAMGENGEFHT 417
            +  ++ QA H  +  L VPL  G  PY D   +     L P RV    FGDLHL+ +R WR+ TF       GA    FPL+ VPY+EL+A L A  GV   + AV+   EG+  +  GD + +  I+RLP+ +D  GENGEFHT
Sbjct:  130 LNQIVRQAEHLGVPLLGVPLHPGH-PYVDR--IHEAVGLVP-RVARFVFGDLHLEHIREWRDTTFRDLADELGA-TLHFPLWGVPYQELIADLEAS-GVPCEVSAVTEPAEGV--VEVGDWFDREMIERLPDRIDPFGENGEFHT 266          
BLAST of mRNA_H-elongata_contig147817.3227.1 vs. uniprot
Match: A0A7S2KC50_9STRA (Diphthine--ammonia ligase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KC50_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.810e-18
Identity = 57/147 (38.78%), Postives = 85/147 (57.82%), Query Frame = 1
Query:    1 ITDVLAQARHERLDALVVPLGGGTGPYPDSYAVTLKAALKPLR------VKALAFGDLHLQELRSWREDTFSG-AYPCEFPLFEVPYEELLARLWAEKGVALRLCAVSTQHEGLEGLSKGDVYCKAFIKRLP-EGVDAMGENGEFHT 417
            I +VL QA H  +  + VP+  G+    +SY   +K ALK ++      VK+L FGDLHL+ ++SWR+D         E+PL++VPY+ L+A L A + VA  + A +T     + +S+G  +   F K +  +G DA GENGEFHT
Sbjct:  294 IDEVLKQAEHLDISLVGVPVHRGSS---ESYLTRIKCALKHIKDTTGQPVKSLVFGDLHLEHIKSWRDDELGKLGLELEYPLWKVPYDTLMADLVASE-VACVVSASTT-----DKVSEGTRFSSEFSKEIALQGCDAFGENGEFHT 431          
BLAST of mRNA_H-elongata_contig147817.3227.1 vs. uniprot
Match: A0A316TU23_9BACT (Diphthami_syn_2 domain-containing protein n=1 Tax=Rhodohalobacter mucosus TaxID=2079485 RepID=A0A316TU23_9BACT)

HSP 1 Score: 85.1 bits (209), Expect = 7.520e-18
Identity = 47/116 (40.52%), Postives = 69/116 (59.48%), Query Frame = 1
Query:   85 DSYAVTLKAALK--PLRVKALAFGDLHLQELRSWREDTFSG-AYPCEFPLFEVPYEELLARLWAEKGVALRLCAVSTQHEGLEGLSKGDVYCKAFIKRLPEGVDAMGENGEFHTHV 423
            D+Y   LK A +  P +++ L FGDLHL+++R WRE+ F    Y   FP++    +EL+ RL  E  V +R+ AV       E ++ GD+Y + +   LP+ +D MGENGEFHT V
Sbjct:   82 DTYLNALKNAFQAIPYQIERLIFGDLHLKDIRKWREEQFHALGYNTAFPIWAKSVDELIDRLEKEP-VTIRVSAVMQSCR--EHIAPGDLYNRDYAYSLPDHIDPMGENGEFHTEV 194          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147817.3227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSF6_ECTSI1.350e-7779.02Diphthine--ammonia ligase n=2 Tax=Ectocarpus TaxID... [more]
A0A835YXG3_9STRA2.630e-3650.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A345YEE0_9SPHN3.000e-2342.47Diphthami_syn_2 domain-containing protein n=1 Tax=... [more]
A0A6I7QBU6_9BACT9.600e-2338.78Diphthami_syn_2 domain-containing protein n=1 Tax=... [more]
A0A1X6PBK6_PORUM4.110e-2144.22Diphthine--ammonia ligase n=1 Tax=Porphyra umbilic... [more]
A0A1Y2C0D4_9FUNG3.200e-2036.90Diphthine--ammonia ligase (Fragment) n=1 Tax=Rhizo... [more]
A0A358DN45_9DELT1.010e-1940.27Diphthami_syn_2 domain-containing protein n=2 Tax=... [more]
A0A7X4E254_9BACT8.090e-1941.38Diphthami_syn_2 domain-containing protein n=1 Tax=... [more]
A0A7S2KC50_9STRA2.810e-1838.78Diphthine--ammonia ligase (Fragment) n=1 Tax=Lepto... [more]
A0A316TU23_9BACT7.520e-1840.52Diphthami_syn_2 domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147817contigH-elongata_contig147817:516..938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score243.8
Seed ortholog evalue4.8e-62
Seed eggNOG ortholog2880.D7FSF6
EggNOG OGs2CTC6@1,2S4BH@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDUF71 domain
Ec32 orthologEc-04_000660.1
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929876.0287504-CDS-H-elongata_contig147817:515..9381622929876.0287504-CDS-H-elongata_contig147817:515..938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147817 516..938 +
1691679191.7233317-CDS-H-elongata_contig147817:515..9381691679191.7233317-CDS-H-elongata_contig147817:515..938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147817 516..938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147817.3227.1prot_H-elongata_contig147817.3227.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147817 516..938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147817.3227.1

>prot_H-elongata_contig147817.3227.1 ID=prot_H-elongata_contig147817.3227.1|Name=mRNA_H-elongata_contig147817.3227.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
ITDVLAQARHERLDALVVPLGGGTGPYPDSYAVTLKAALKPLRVKALAFG
DLHLQELRSWREDTFSGAYPCEFPLFEVPYEELLARLWAEKGVALRLCAV
STQHEGLEGLSKGDVYCKAFIKRLPEGVDAMGENGEFHTHV
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mRNA from alignment at H-elongata_contig147817:516..938+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147817.3227.1 ID=mRNA_H-elongata_contig147817.3227.1|Name=mRNA_H-elongata_contig147817.3227.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=423bp|location=Sequence derived from alignment at H-elongata_contig147817:516..938+ (Himanthalia elongata Himel1 dioecious)
ATAACAGACGTGCTCGCACAGGCACGGCACGAGCGCCTCGACGCCCTCGT CGTGCCTCTTGGCGGCGGAACCGGGCCCTACCCCGACTCCTACGCCGTGA CCCTCAAGGCCGCCCTGAAGCCGCTCAGGGTGAAGGCCCTCGCGTTCGGC GACCTGCACCTTCAAGAGCTACGCTCGTGGCGCGAGGACACCTTTTCCGG CGCGTACCCATGCGAATTCCCCCTGTTCGAAGTGCCCTACGAGGAGCTTC TCGCGAGACTTTGGGCCGAGAAGGGTGTGGCCTTGCGGCTGTGTGCCGTG AGCACGCAACACGAAGGATTGGAGGGGCTTTCGAAGGGAGACGTCTACTG CAAAGCATTCATAAAGAGGTTGCCTGAAGGGGTAGATGCGATGGGGGAAA ACGGGGAGTTCCACACGCATGTT
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Coding sequence (CDS) from alignment at H-elongata_contig147817:516..938+

>mRNA_H-elongata_contig147817.3227.1 ID=mRNA_H-elongata_contig147817.3227.1|Name=mRNA_H-elongata_contig147817.3227.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig147817:516..938+ (Himanthalia elongata Himel1 dioecious)
ATAACAGACGTGCTCGCACAGGCACGGCACGAGCGCCTCGACGCCCTCGT
CGTGCCTCTTGGCGGCGGAACCGGGCCCTACCCCGACTCCTACGCCGTGA
CCCTCAAGGCCGCCCTGAAGCCGCTCAGGGTGAAGGCCCTCGCGTTCGGC
GACCTGCACCTTCAAGAGCTACGCTCGTGGCGCGAGGACACCTTTTCCGG
CGCGTACCCATGCGAATTCCCCCTGTTCGAAGTGCCCTACGAGGAGCTTC
TCGCGAGACTTTGGGCCGAGAAGGGTGTGGCCTTGCGGCTGTGTGCCGTG
AGCACGCAACACGAAGGATTGGAGGGGCTTTCGAAGGGAGACGTCTACTG
CAAAGCATTCATAAAGAGGTTGCCTGAAGGGGTAGATGCGATGGGGGAAA
ACGGGGAGTTCCACACGCATGTTATAACAGACGTGCTCGCACAGGCACGG
CACGAGCGCCTCGACGCCCTCGTCGTGCCTCTTGGCGGCGGAACCGGGCC
CTACCCCGACTCCTACGCCGTGACCCTCAAGGCCGCCCTGAAGCCGCTCA
GGGTGAAGGCCCTCGCGTTCGGCGACCTGCACCTTCAAGAGCTACGCTCG
TGGCGCGAGGACACCTTTTCCGGCGCGTACCCATGCGAATTCCCCCTGTT
CGAAGTGCCCTACGAGGAGCTTCTCGCGAGACTTTGGGCCGAGAAGGGTG
TGGCCTTGCGGCTGTGTGCCGTGAGCACGCAACACGAAGGATTGGAGGGG
CTTTCGAAGGGAGACGTCTACTGCAAAGCATTCATAAAGAGGTTGCCTGA
AGGGGTAGATGCGATGGGGGAAAACGGGGAGTTCCACACGCATGTT
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