mRNA_H-elongata_contig146745.3173.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146745.3173.1
Unique NamemRNA_H-elongata_contig146745.3173.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig146745.3173.1 vs. uniprot
Match: A0A8F0FAV1_9PHAE (Uncharacterized protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAV1_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 6.570e-55
Identity = 79/92 (85.87%), Postives = 86/92 (93.48%), Query Frame = 1
Query:    1 MCICLNCKRLNYCQIYSIVEQKHGEKQSNIKILFAPQSPILTCINFFSKKKLYTLEWDVNECLSYQEKPGSWLIKDSLELNFSSYLSFDLSF 276
            MCICLNCKRLNYC+IYSIVEQKHGEK++NI+I F PQSPIL CINFFSKK  YT+EWDVNECLSYQEKPGSWLIKDS+EL+FSSYLSFDL F
Sbjct:    1 MCICLNCKRLNYCEIYSIVEQKHGEKKNNIQIFFFPQSPILACINFFSKKNSYTIEWDVNECLSYQEKPGSWLIKDSIELDFSSYLSFDLLF 92          
BLAST of mRNA_H-elongata_contig146745.3173.1 vs. uniprot
Match: A0A344PFD3_9PHAE (Uncharacterized protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PFD3_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 8.620e-42
Identity = 65/92 (70.65%), Postives = 74/92 (80.43%), Query Frame = 1
Query:    1 MCICLNCKRLNYCQIYSIVEQKHGEKQSNIKILFAPQSPILTCINFFSKKKLYTLEWDVNECLSYQEKPGSWLIKDSLELNFSSYLSFDLSF 276
            MCICLNC R+N C++YSI+EQ+H EK       F+PQ+PIL CINFFSKK+LYTLEWDVNECLSYQEKPGSWL  +   LNFSSYL FDL F
Sbjct:    1 MCICLNCDRINSCRVYSIIEQQHQEKLKCQTKPFSPQAPILLCINFFSKKRLYTLEWDVNECLSYQEKPGSWLESNQKRLNFSSYLLFDLLF 92          
BLAST of mRNA_H-elongata_contig146745.3173.1 vs. uniprot
Match: A0A8F0F818_9PHAE (Uncharacterized protein n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0F818_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.740e-41
Identity = 63/92 (68.48%), Postives = 74/92 (80.43%), Query Frame = 1
Query:    1 MCICLNCKRLNYCQIYSIVEQKHGEKQSNIKILFAPQSPILTCINFFSKKKLYTLEWDVNECLSYQEKPGSWLIKDSLELNFSSYLSFDLSF 276
            MCICLNC+R+N C+IYSI+EQKH EK+  ++ +F PQSPIL CINFFSKKK Y  EWDVNECLSYQEKPG WL+ +   L  SSYL+FDL F
Sbjct:    1 MCICLNCERINNCEIYSIIEQKHNEKRKRVENIFFPQSPILLCINFFSKKKNYLFEWDVNECLSYQEKPGKWLLLNPEILGSSSYLTFDLLF 92          
BLAST of mRNA_H-elongata_contig146745.3173.1 vs. uniprot
Match: A0A5A4MIQ9_9PHAE (Uncharacterized protein n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MIQ9_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.470e-40
Identity = 63/92 (68.48%), Postives = 73/92 (79.35%), Query Frame = 1
Query:    1 MCICLNCKRLNYCQIYSIVEQKHGEKQSNIKILFAPQSPILTCINFFSKKKLYTLEWDVNECLSYQEKPGSWLIKDSLELNFSSYLSFDLSF 276
            MCICLNC R+N C++YSI+EQ+H EK       F+PQ+PIL CINFFSKK+LY LEWDV+ECLSYQEKPGSWL  +   LNFSSYL FDL F
Sbjct:    1 MCICLNCDRINRCRVYSIIEQQHKEKMKCQTKPFSPQAPILLCINFFSKKRLYALEWDVSECLSYQEKPGSWLESNKKSLNFSSYLLFDLFF 92          
BLAST of mRNA_H-elongata_contig146745.3173.1 vs. uniprot
Match: A0A1I9LVZ6_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVZ6_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.670e-39
Identity = 59/92 (64.13%), Postives = 73/92 (79.35%), Query Frame = 1
Query:    1 MCICLNCKRLNYCQIYSIVEQKHGEKQSNIKILFAPQSPILTCINFFSKKKLYTLEWDVNECLSYQEKPGSWLIKDSLELNFSSYLSFDLSF 276
            MCICLNC R+N C++Y I+E++H EK   +K  F+PQ PIL C+NFF KK+LY +EWDVNECLSYQEKPGSWL ++  +L FSSYL FDL F
Sbjct:    1 MCICLNCDRINKCRLYFIIEEQHQEKIKGLKKSFSPQGPILVCLNFFFKKRLYIIEWDVNECLSYQEKPGSWLDRNQKKLKFSSYLLFDLLF 92          
BLAST of mRNA_H-elongata_contig146745.3173.1 vs. uniprot
Match: A0A8F0F920_9PHAE (Uncharacterized protein n=1 Tax=Laminaria ephemera TaxID=309364 RepID=A0A8F0F920_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.020e-38
Identity = 64/94 (68.09%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 MCICLNCKRLNYCQIYSIVEQKHGEKQSNIKIL--FAPQSPILTCINFFSKKKLYTLEWDVNECLSYQEKPGSWLIKDSLELNFSSYLSFDLSF 276
            MCICLNC R++ C++YSIVEQKH EK+   K    F PQSP L CINFFSKKKLY LEWDVNECLSYQEKPGSW+  +      SSYLSFDL F
Sbjct:    1 MCICLNCNRIDNCEVYSIVEQKHNEKKKYQKKTRQFFPQSPTLLCINFFSKKKLYLLEWDVNECLSYQEKPGSWMSFNQKNFQHSSYLSFDLLF 94          
BLAST of mRNA_H-elongata_contig146745.3173.1 vs. uniprot
Match: A0A0S0GLR5_COSCS (Conserved hypothetical plastid protein n=1 Tax=Costaria costata TaxID=2872 RepID=A0A0S0GLR5_COSCS)

HSP 1 Score: 132 bits (331), Expect = 2.850e-38
Identity = 63/93 (67.74%), Postives = 70/93 (75.27%), Query Frame = 1
Query:    1 MCICLNCKRLNYCQIYSIVEQKHGEKQS-NIKILFAPQSPILTCINFFSKKKLYTLEWDVNECLSYQEKPGSWLIKDSLELNFSSYLSFDLSF 276
            MCICLNC R+N C++YSIVEQKH EKQ+   K  F PQSP L CINFFSK  LY LEWDVNECLSYQEKPG+W++        SSYLSFDL F
Sbjct:    1 MCICLNCDRINNCEVYSIVEQKHNEKQAYKKKRQFFPQSPTLLCINFFSKNNLYLLEWDVNECLSYQEKPGNWMLISQKNSKNSSYLSFDLLF 93          
BLAST of mRNA_H-elongata_contig146745.3173.1 vs. uniprot
Match: A0A7U3NIB4_9PHAE (Uncharacterized protein n=7 Tax=Laminariaceae TaxID=33636 RepID=A0A7U3NIB4_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.940e-38
Identity = 64/94 (68.09%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 MCICLNCKRLNYCQIYSIVEQKHGEKQSNI--KILFAPQSPILTCINFFSKKKLYTLEWDVNECLSYQEKPGSWLIKDSLELNFSSYLSFDLSF 276
            MCICLNC R+N C +Y IVEQKH EK+++   K  F PQSP L CINFFSKK LY LEWDVNECLSYQEKPGSW+  D  +   SSYLSFDL F
Sbjct:    1 MCICLNCNRINNCDVYFIVEQKHNEKKNSHTKKRPFFPQSPTLLCINFFSKKNLYLLEWDVNECLSYQEKPGSWMAFDQKKSRNSSYLSFDLFF 94          
BLAST of mRNA_H-elongata_contig146745.3173.1 vs. uniprot
Match: A0A8F0FAC9_9PHAE (Uncharacterized protein n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FAC9_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.700e-37
Identity = 64/94 (68.09%), Postives = 70/94 (74.47%), Query Frame = 1
Query:    1 MCICLNCKRLNYCQIYSIVEQKHGEKQSNI--KILFAPQSPILTCINFFSKKKLYTLEWDVNECLSYQEKPGSWLIKDSLELNFSSYLSFDLSF 276
            MCICLNC R++ C++Y IVEQKH EKQ     K LF PQSP L CIN FSKKKLY LEWDVNECLSYQEKPGSW+  +      SSYLSFDL F
Sbjct:    1 MCICLNCNRIDNCKVYFIVEQKHNEKQKYYTKKKLFFPQSPTLLCINSFSKKKLYLLEWDVNECLSYQEKPGSWMSFNQKNSRNSSYLSFDLLF 94          
BLAST of mRNA_H-elongata_contig146745.3173.1 vs. uniprot
Match: A0A8F0F822_9PHAE (Uncharacterized protein n=1 Tax=Postelsia palmaeformis TaxID=105414 RepID=A0A8F0F822_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.170e-36
Identity = 58/94 (61.70%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 MCICLNCKRLNYCQIYSIVEQKHGEKQSNI--KILFAPQSPILTCINFFSKKKLYTLEWDVNECLSYQEKPGSWLIKDSLELNFSSYLSFDLSF 276
            MCICLNC R+  C++Y +VEQKH EK+++   K LF PQSP L CINFFS+K LY LEWD+NECLSYQEKPG+W++        +SYLSFDL F
Sbjct:    1 MCICLNCNRITNCEVYFVVEQKHNEKKNHHIKKSLFFPQSPTLVCINFFSQKNLYLLEWDINECLSYQEKPGNWIVFKQKNCREASYLSFDLFF 94          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146745.3173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FAV1_9PHAE6.570e-5585.87Uncharacterized protein n=1 Tax=Desmarestia aculea... [more]
A0A344PFD3_9PHAE8.620e-4270.65Uncharacterized protein n=1 Tax=Endarachne bingham... [more]
A0A8F0F818_9PHAE1.740e-4168.48Uncharacterized protein n=1 Tax=Pseudochorda nagai... [more]
A0A5A4MIQ9_9PHAE1.470e-4068.48Uncharacterized protein n=4 Tax=Scytosiphonaceae T... [more]
A0A1I9LVZ6_9PHAE1.670e-3964.13Uncharacterized protein n=1 Tax=Pleurocladia lacus... [more]
A0A8F0F920_9PHAE1.020e-3868.09Uncharacterized protein n=1 Tax=Laminaria ephemera... [more]
A0A0S0GLR5_COSCS2.850e-3867.74Conserved hypothetical plastid protein n=1 Tax=Cos... [more]
A0A7U3NIB4_9PHAE2.940e-3868.09Uncharacterized protein n=7 Tax=Laminariaceae TaxI... [more]
A0A8F0FAC9_9PHAE1.700e-3768.09Uncharacterized protein n=2 Tax=Ecklonia TaxID=105... [more]
A0A8F0F822_9PHAE1.170e-3661.70Uncharacterized protein n=1 Tax=Postelsia palmaefo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146745contigH-elongata_contig146745:588..866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size279
Cds size279
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929871.5580885-CDS-H-elongata_contig146745:587..8661622929871.5580885-CDS-H-elongata_contig146745:587..866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146745 588..866 +
1691679189.858941-CDS-H-elongata_contig146745:587..8661691679189.858941-CDS-H-elongata_contig146745:587..866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146745 588..866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146745.3173.1prot_H-elongata_contig146745.3173.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146745 588..866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146745.3173.1

>prot_H-elongata_contig146745.3173.1 ID=prot_H-elongata_contig146745.3173.1|Name=mRNA_H-elongata_contig146745.3173.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MCICLNCKRLNYCQIYSIVEQKHGEKQSNIKILFAPQSPILTCINFFSKK
KLYTLEWDVNECLSYQEKPGSWLIKDSLELNFSSYLSFDLSF*
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mRNA from alignment at H-elongata_contig146745:588..866+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146745.3173.1 ID=mRNA_H-elongata_contig146745.3173.1|Name=mRNA_H-elongata_contig146745.3173.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig146745:588..866+ (Himanthalia elongata Himel1 dioecious)
ATGTGCATTTGTTTGAATTGTAAGCGTTTGAATTATTGTCAAATTTATTC GATTGTTGAGCAAAAGCATGGTGAAAAACAAAGTAATATAAAAATTTTAT TTGCTCCTCAATCCCCTATTTTAACATGTATAAATTTTTTTTCGAAAAAA AAATTATACACATTGGAATGGGATGTTAATGAATGTTTATCATATCAAGA AAAACCAGGTAGTTGGTTAATAAAAGATTCACTTGAATTAAATTTTTCGT CTTACCTATCTTTTGACTTATCATTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig146745:588..866+

>mRNA_H-elongata_contig146745.3173.1 ID=mRNA_H-elongata_contig146745.3173.1|Name=mRNA_H-elongata_contig146745.3173.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig146745:588..866+ (Himanthalia elongata Himel1 dioecious)
ATGTGCATTTGTTTGAATTGTAAGCGTTTGAATTATTGTCAAATTTATTC
GATTGTTGAGCAAAAGCATGGTGAAAAACAAAGTAATATAAAAATTTTAT
TTGCTCCTCAATCCCCTATTTTAACATGTATAAATTTTTTTTCGAAAAAA
AAATTATACACATTGGAATGGGATGTTAATGAATGTTTATCATATCAAGA
AAAACCAGGTAGTTGGTTAATAAAAGATTCACTTGAATTAAATTTTTCGT
CTTACCTATCTTTTGACTTATCATTTTGAATGTGCATTTGTTTGAATTGT
AAGCGTTTGAATTATTGTCAAATTTATTCGATTGTTGAGCAAAAGCATGG
TGAAAAACAAAGTAATATAAAAATTTTATTTGCTCCTCAATCCCCTATTT
TAACATGTATAAATTTTTTTTCGAAAAAAAAATTATACACATTGGAATGG
GATGTTAATGAATGTTTATCATATCAAGAAAAACCAGGTAGTTGGTTAAT
AAAAGATTCACTTGAATTAAATTTTTCGTCTTACCTATCTTTTGACTTAT
CATTTTGA
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