mRNA_H-elongata_contig14642.3162.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Match: A0A6H5L283_9PHAE (Fibronectin type-III domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L283_9PHAE) HSP 1 Score: 625 bits (1613), Expect = 1.980e-217 Identity = 341/615 (55.45%), Postives = 415/615 (67.48%), Query Frame = 1
Query: 7 RLGEDEEDRVLAERAAISDNVALMVLLQPWEDCKHPSGACVVCTQLHDEQGPDGDAVRMLQACGLTRTVEAFNSDFHLPVIICGTMNFVPSSGAYEILGRGVAPLDPVVPGPPGKPLVEPLSTSTARIRWMSPEENNETLSPPVDTYKVLWVPGGSRFLPGESVDVPAADCLGYDLVETESGNMKSKQKPLRYFVVTGLSSGIAYEFRIAAINALGQGAWSERSDPARMLILESNPPEDRVLLSAASIKVLRNRELEGVRCRAEHKRTDPRAYEACRLIKVDGLLDLGAANSHPFHSVSGATPRYSDALIHPDSANVRTDMGFPMIMPASSLE------------------------GLSLTTAN---TTTEKVKG--DPGTCTVDLTRRHPAIAKRALGERAVLAIKTQPQSTVIGDEVSWRMKSTKNVTSFETSFETKPNPNRESEPNQASLSIGRGMERDVLQRLVALKVSGARSGRQRHALGLRSAYMSYGPGGEPNFTTLS----GTFDYIFFSANCLLPVRVLSLPERGSLQGRDLQHTLLVPIPGSPPPVEWQGNAAAGAYVGQWAPYLRENRKRLTIQIPNEVFPSDHLILMVDLLYFEPRCPSTWR 1752
+LGE EE+R LA +AA SDNVALM LL+PW+D HPSGAC+VCTQL +E+G GDA+R LQA GLTR+VEAFNSDF LP+++CGTMN VPSSG YEIL RG+ DP PGPPGKPLVEP+STS AR+RW +P + +E+LSP +DTY++LWVPGGSRFLPGE+VD A C+ YDLV+ ESG ++S+Q PLR FVV+GLSSG+AYEFR++AIN+LGQG WSERS+P RM + N P DRVLL AASIK+LR RELE R RAE + +PRAYE +L+KV+GLLDLG HPF SVSG TPRY+DA +HPD ANVRTD GFP+I G T +N T+ KG D CT L + A + T G+ S TS + E+ P + S P +A S R E ++L RL +L VSGARS RQ+HALGLRSAYM++ GGEP FT LS GT DYIFFSA+CLLP +VLS+PE GSL GRD+Q T L P+PG P EWQG Y+G+W+PYLREN R+ ++PNE+FPSDHL+LM +LLYFEPRC STWR
Sbjct: 9 QLGEHEENRSLAGKAATSDNVALMTLLRPWQDSDHPSGACIVCTQLSEEEGYIGDAIRGLQARGLTRSVEAFNSDFSLPIVMCGTMNCVPSSGTYEILCRGIEAQDPARPGPPGKPLVEPISTSAARVRWSAPSDYSESLSPAIDTYRLLWVPGGSRFLPGETVDAHEAGCVEYDLVKAESGRVRSEQNPLRAFVVSGLSSGVAYEFRVSAINSLGQGPWSERSEPVRMPQMAGNDPVDRVLLGAASIKLLRKRELEDARRRAEERLANPRAYELRKLVKVEGLLDLGMEKIHPFGSVSGVTPRYTDASLHPDLANVRTDTGFPVIKAIEERRMXXXXXXXXXXXXXXXXXXXXXXAGSHQTRSNDEQVTSSSTKGPLDDDLCTCSL-------------DGASASTTTGGFRNGSGEGRS--------DTSGAGAGESVTRPTKSSLPPKACGSFPR--EENILLRLESLDVSGARSERQKHALGLRSAYMTHSSGGEPAFTMLSDTMVGTVDYIFFSADCLLPTQVLSIPEMGSLVGRDIQQTDLSPVPGLWAPSEWQGECGEEGYMGEWSPYLRENPLRVKHRVPNEIFPSDHLMLMANLLYFEPRCSSTWR 600
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Match: D7G7V5_ECTSI (Fibronectin type-III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7V5_ECTSI) HSP 1 Score: 623 bits (1606), Expect = 3.960e-214 Identity = 337/600 (56.17%), Postives = 418/600 (69.67%), Query Frame = 1
Query: 1 VSRLGEDEEDRVLAERAAISDNVALMVLLQPWEDCKHPSGACVVCTQLHDEQGPDGDAVRMLQACGLTRTVEAFNSDFHLPVIICGTMNFVPSSGAYEILGRGVAPLDPVVPGPPGKPLVEPLSTSTARIRWMSPEENNETLSPPVDTYKVLWVPGGSRFLPGESVDVPAADCLGYDLVETESGNMKSKQKPLRYFVVTGLSSGIAYEFRIAAINALGQGAWSERSDPARMLILESNPPEDRVLLSAASIKVLRNRELEGVRCRAEHKRTDPRAYEACRLIKVDGLLDLGAANSHPFHSVSGATPRYSDALIHPDSANVRTDMGFPMIMPASSLEGLSLTTANT----------TTEKVKGDPGTCTVDLTRRHPAIAKRALGERAVLAIKTQPQSTVIGDEVSWRMKST--KNVTSFETSFETKPNPNRESEPNQASLSIGRGMERDVLQRLVALKVSGARSGRQRHALGLRSAYMSYGPGGEPNFTTLS----GTFDYIFFSANCLLPVRVLSLPERGSLQGRDLQHTLLVPIPGSPPPVEWQGNAAAGAYVGQWAPYLRENRKRLTIQIPNEVFPSDHLILMVDLLYFEPRCPSTWR 1752
++RLGE EEDR LA +AA SDNVALM LL+PW+D HPSGAC+VCTQL +E+G GDA+R LQA GLTR+VEAFNSDF LP+++CGTMN PSSG YEIL RG+ DP PGPPGKPLVEP+STS AR+RW +P +++E+LSP +DTY++LWVPGGSRFLPGESVD A C+ YDLV+TESG ++S+Q PLR FVV+GLSSG+AYEFR++AIN+LGQG WSERS+P RM + N P D+VLL AASIK+LR RELE R RAE + DPRAYE +L+KV+GLLDLG HPF SVSG TPRY+DA +HPD ANVRTD GFP+I ++E L++ T + L + + +++ ST G +R S ++ TS + E+ P + P +A S R E ++L RL +L VSGARS RQ+HALGLRSAYM++ GGEP FT LS GT DYIFFSA+CLLP +VLS+PE GSL RD+Q T L P PG P EWQG Y+G+W+PYLREN R+ +IPNE+FPSDHL+LM +L+YFEPRC STWR
Sbjct: 163 LNRLGEHEEDRSLAGKAATSDNVALMTLLRPWQDSDHPSGACIVCTQLSEEEGYIGDAIRGLQAHGLTRSVEAFNSDFSLPIVMCGTMNCAPSSGTYEILCRGIEAQDPARPGPPGKPLVEPISTSAARVRWPAPSDDSESLSPAIDTYRLLWVPGGSRFLPGESVDAHEAGCVVYDLVKTESGRVRSEQNPLRAFVVSGLSSGVAYEFRVSAINSLGQGPWSERSEPVRMPQMAGNDPVDKVLLGAASIKLLRKRELEDARRRAEERLADPRAYELRKLVKVEGLLDLGMEKIHPFGSVSGVTPRYTDAALHPDLANVRTDTGFPVI---KAIEERRLSSGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGLLDDDLSSLEDASASTTGG----FRNGSGEGRSDTSGVDTGESVTRPTKSLLPPKACGSSQR--EENILLRLDSLNVSGARSERQKHALGLRSAYMTHSSGGEPAFTMLSDTMVGTVDYIFFSADCLLPTQVLSIPEMGSLVRRDIQQTELSPAPGLWAPSEWQGECGEERYMGEWSPYLRENPLRVKHRIPNELFPSDHLMLMANLVYFEPRCSSTWR 753
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Match: A0A2R5GWN2_9STRA (Centrosomal protein of 19 kDa n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWN2_9STRA) HSP 1 Score: 122 bits (305), Expect = 2.510e-25 Identity = 78/225 (34.67%), Postives = 115/225 (51.11%), Query Frame = 1
Query: 61 DNVALMVLLQPWEDCKHPSGACVVCTQLHDEQGPDGDAVRMLQACGLTRTVEAFNSDFHLPVIICGTMNFVPSSGAYEILGRGVAPLDPVVPGP-PGKPLVEPLSTSTARIRWMSPEENNETLSPPVDTYKVLWVPGGSRFLPGESVDVPAADCLGYDLVETESGNMKSKQKPLRYFVVTGLSSGIAYEFRIAAINALGQGAWSERSDPARMLILESNPPEDRVL 732
DNV ++V +QPWED HPS V QL PD +AV+ Q L RTVE FN+DF LPV++CG+ NF+ S Y I+ RG P PG +P + L+ S R+RW +P + + Y + GG+ D PA + L E + ++ V+GLS+G+ YEF +AA++A+GQG +S+ + P + PP + +L
Sbjct: 187 DNVGVIVAIQPWEDSDHPSALLVSNVQLVTPTDPDLEAVQRKQVLMLLRTVERFNADFQLPVLMCGSFNFLQQSDLYTIVTRGKFPFQLTRPGTIDERPEAKVLAHSHVRVRWKAPSSGDAA----IQGYVIRRRCGGNT---SRGFDDPAF----FPLSAVEHDGLVWREAN-----VSGLSAGLTYEFVVAAVSAVGQGDFSQPTPPVTTRVNAQLPPINDIL 395
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Match: K3WS66_GLOUD (Fibronectin type-III domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WS66_GLOUD) HSP 1 Score: 115 bits (287), Expect = 3.010e-23 Identity = 72/214 (33.64%), Postives = 112/214 (52.34%), Query Frame = 1
Query: 64 NVALMVLLQPWEDCKHPSGACVVCTQLHDEQGPDGDAVRMLQACGLTRTVEAFNSDFHLPVIICGTMNFVPSSGAYEILGRGVAPLDPVVPGPPGKPLVEPLSTSTARIRWMSPEENNETLSPPVDTYKVLWVPGGSRFLPGESVDVPAADCLGY--DLVETESGNMKSKQKPLRYFVVTGLSSGIAYEFRIAAINALGQGAWSERSDPARMLI 699
NVAL+V LQPWE K PS C+ TQL GP +++R+LQA L R + FN++FHLP+++ GT N +PSS Y ++ G P P P +P+++ + ++ + W +P + E+ P+ YKV +V A+ +G+ ++V N F +T LSS + Y+FR+AA NA G +S+ S P L+
Sbjct: 195 NVALLVCLQPWETSKLPSALCIANTQL--VSGPTLESIRVLQAEYLCRQIAIFNANFHLPILLAGTFNALPSSDVYHVIHTGRRRPSPQAPITPERPILQEPTPTSITVTWSTPTNDVESAEAPILEYKV-------------AVKNCASATIGFMHEIVVPAHVNE---------FTMTMLSSDVTYQFRVAARNAHGWSHFSQPSAPMATLV 384
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Match: A0A8K1FQ39_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQ39_PYTOL) HSP 1 Score: 109 bits (272), Expect = 1.990e-21 Identity = 72/209 (34.45%), Postives = 107/209 (51.20%), Query Frame = 1
Query: 61 DNVALMVLLQPWEDCKHPSGACVVCTQLHDEQGPDGDAVRMLQACGLTRTVEAFNSDFHLPVIICGTMNFVPSSGAYEILGRGVAPLDPVVPGPPGKPLVEPLSTSTARIRWMSPEENNETLSPPVDTYKVLWVPGGSRFLPGESVDVPAADCLGYDLVETE-SGNMKSKQKPLRYFVVTGLSSGIAYEFRIAAINALGQGAWSERSDP 684
+ +AL+V LQPWE + PS CVV TQL GP + VR+LQA L R + N+ FHLP ++ GT N +PSS Y ++ G P P +P+ + S S+ ++ W PE + P+ YK+ + + LG+D+ E E G+ + + + VT LS+GI Y+FR+AA N G G +S+ S P
Sbjct: 178 NRLALLVNLQPWEQSRLPSAICVVTTQL--TAGPTLEQVRVLQAEYLCREIARINASFHLPTVLAGTFNALPSSDVYHVIQTGRRRPSPEAPREMKRPVPQDASPSSVQLAWTPPECGDA----PILGYKI-------------GIKNCTSATLGFDMHEIEFDGDANTTE-----YTVTMLSAGIPYQFRMAARNLHGYGHFSQPSAP 362
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Match: A0A1V9YUF3_9STRA (Fibronectin type-III domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YUF3_9STRA) HSP 1 Score: 108 bits (269), Expect = 3.740e-21 Identity = 80/210 (38.10%), Postives = 106/210 (50.48%), Query Frame = 1
Query: 61 DNVALMVLLQPWEDCKHPSGACVVCTQLHDEQGPDGDAVRMLQACGLTRTVEAFNSDFHLPVIICGTMNFVPSSGAYEILGRGVAPLDPVVPGPPGKPLVEPLSTSTARIRWMSPEENNETLSPPVDTYKVLWVPGGSRFLPGESVDVPAADCLGYDL-VETESGNMKSKQKPLRYFVVTGLSSGIAYEFRIAAINALGQGAWSERSDPA 687
DNVAL+V LQPWE+C PS CVV QL PD +AVR Q L VEAFN+DF +P+I+ G+ N P S Y IL G + P P P V +TS+ + W P ++ P+ Y+V R + G +V +G+ + E +MKS F T LS+G YEFR++A NA G WSE S P+
Sbjct: 150 DNVALLVALQPWEECAFPSPLCVVNVQLASH--PDHEAVRDAQIRYLLPEVEAFNADFQMPLIVAGSFNVRPDSQIYHILRTGRSRPGPTPPTRMDPPNVSDATTSSLTLSWEIPI----SVDGPILGYRV------DRRVNGSTV-------VGFTHEIMVEDASMKS-------FKATMLSAGSQYEFRVSAKNAFG---WSEYSRPS 330
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Match: W4G3H3_9STRA (Fibronectin type-III domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G3H3_9STRA) HSP 1 Score: 104 bits (259), Expect = 7.420e-20 Identity = 80/215 (37.21%), Postives = 99/215 (46.05%), Query Frame = 1
Query: 61 DNVALMVLLQPWEDCKHPSGACVVCTQLHDEQGPDGDAVRMLQACGLTRTVEAFNSDFHLPVIICGTMNFVPSSGAYEILGRGVAPLDPVVPGPPGKPLVEPLSTSTARIRWMSPEENNETLSPPVDTYKVLWVPGGSR---FLPGESVDVPAADCLGYDLVETESGNMKSKQKPLRYFVVTGLSSGIAYEFRIAAINALGQGAWSERSDPARML 696
DNVAL+V LQPWE C+ PS CV QL PD D VR Q L +EAFN+DFHLP+++ G+ N P S Y + G P P P STST + W ++ P+ Y+ + GS F +D PA VE F VT LS+G YEFRIAA NA G WSE S P++ L
Sbjct: 149 DNVALVVALQPWEQCQFPSALCVANVQLASH--PDLDLVRQHQLAYLCPQIEAFNADFHLPIVVAGSFNATPMSHVYHTMRTGRPRPAPEPPARMSPPKASDPSTSTITLSWDVAVSSHG----PILGYRFVRRVNGSTTVGFTHEIELDDPAQ-------VE---------------FKVTMLSAGNTYEFRIAARNAAG---WSEYSLPSQPL 332
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Match: A0A024TXB5_9STRA (Fibronectin type-III domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXB5_9STRA) HSP 1 Score: 102 bits (255), Expect = 2.450e-19 Identity = 73/224 (32.59%), Postives = 104/224 (46.43%), Query Frame = 1
Query: 61 DNVALMVLLQPWEDCKHPSGACVVCTQLHDEQGPDGDAVRMLQACGLTRTVEAFNSDFHLPVIICGTMNFVPSSGAYEILGRGVAPLDPVVPGPPGKPLVEPLSTSTARIRWMSPEENNETLSPPVDTYKVLWVPGGSRFLPGESVDVPAADCLGYDLVETESGNMKSKQKPLRYFVVTGLSSGIAYEFRIAAINALGQGAWSERSDP-----ARMLILESNPP 717
DNVAL+V LQPWE C PS CV QL P+ + VR Q + VEAFN+DFHLP++I G+ N P S Y + G +P P +PL +TST + W+ PPV + + G R + V+ ++++ + ++ T LS+G YEF I+A NA G +S S+P AR ++ S PP
Sbjct: 153 DNVALIVALQPWEQCHFPSAVCVANLQLASH--PNLEPVRQHQLAFVLPQVEAFNADFHLPIVIAGSFNATPVSHVYHTMRTGRPRPEPEPPARMNRPLARDPTTSTITLSWV----------PPVSAHGPIL---GYRLV--RRVNCSTTIGFSHEVMLDNPSQVD--------YIATMLSAGNTYEFCISAKNAAGWSEYSIPSEPIQTLKARAIVDPSKPP 351
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Match: A0A1W0A8X2_9STRA (Fibronectin type-III domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8X2_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 4.830e-10 Identity = 52/155 (33.55%), Postives = 73/155 (47.10%), Query Frame = 1
Query: 1327 ALKVSGARSGRQRHALGLRSAYMSYGPGGEPNFTTLS----GTFDYIFFSANCLLPVRVLSLPERGSLQGRDLQHTLLVPIPG--SPPPVEWQGNAAAGA-----YVGQWAP--YLRENRKRLTIQIPNEVFPSDHLILMVDLLYFEPRCPSTWR 1752
AL G R H SAY Y GGEP +T S GT DYIFF+ L ++L++P SL+G+D + L+ + P W G Y G+W P + +N K +PN++F SDH+ LMV L + E P++W
Sbjct: 403 ALAFRGDREEHLEHFEVFESAYCRYNAGGEPVYTFASDVFTGTIDYIFFTKKELAAFQLLTIPTLSSLKGQDAREPSLITDHDYLTWKPEGWDTKPKNGLVGNPKYSGEWPPDAFRVQNPKCEHHWLPNDLFASDHIALMVVLAFREEELPTSWN 557 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14642.3162.1 >prot_H-elongata_contig14642.3162.1 ID=prot_H-elongata_contig14642.3162.1|Name=mRNA_H-elongata_contig14642.3162.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=585bp VSRLGEDEEDRVLAERAAISDNVALMVLLQPWEDCKHPSGACVVCTQLHDback to top mRNA from alignment at H-elongata_contig14642:6078..7888- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14642.3162.1 ID=mRNA_H-elongata_contig14642.3162.1|Name=mRNA_H-elongata_contig14642.3162.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1811bp|location=Sequence derived from alignment at H-elongata_contig14642:6078..7888- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14642:6078..7888- >mRNA_H-elongata_contig14642.3162.1 ID=mRNA_H-elongata_contig14642.3162.1|Name=mRNA_H-elongata_contig14642.3162.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3510bp|location=Sequence derived from alignment at H-elongata_contig14642:6078..7888- (Himanthalia elongata Himel1 dioecious)back to top |