mRNA_H-elongata_contig14642.3162.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14642.3162.1
Unique NamemRNA_H-elongata_contig14642.3162.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Match: A0A6H5L283_9PHAE (Fibronectin type-III domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L283_9PHAE)

HSP 1 Score: 625 bits (1613), Expect = 1.980e-217
Identity = 341/615 (55.45%), Postives = 415/615 (67.48%), Query Frame = 1
Query:    7 RLGEDEEDRVLAERAAISDNVALMVLLQPWEDCKHPSGACVVCTQLHDEQGPDGDAVRMLQACGLTRTVEAFNSDFHLPVIICGTMNFVPSSGAYEILGRGVAPLDPVVPGPPGKPLVEPLSTSTARIRWMSPEENNETLSPPVDTYKVLWVPGGSRFLPGESVDVPAADCLGYDLVETESGNMKSKQKPLRYFVVTGLSSGIAYEFRIAAINALGQGAWSERSDPARMLILESNPPEDRVLLSAASIKVLRNRELEGVRCRAEHKRTDPRAYEACRLIKVDGLLDLGAANSHPFHSVSGATPRYSDALIHPDSANVRTDMGFPMIMPASSLE------------------------GLSLTTAN---TTTEKVKG--DPGTCTVDLTRRHPAIAKRALGERAVLAIKTQPQSTVIGDEVSWRMKSTKNVTSFETSFETKPNPNRESEPNQASLSIGRGMERDVLQRLVALKVSGARSGRQRHALGLRSAYMSYGPGGEPNFTTLS----GTFDYIFFSANCLLPVRVLSLPERGSLQGRDLQHTLLVPIPGSPPPVEWQGNAAAGAYVGQWAPYLRENRKRLTIQIPNEVFPSDHLILMVDLLYFEPRCPSTWR 1752
            +LGE EE+R LA +AA SDNVALM LL+PW+D  HPSGAC+VCTQL +E+G  GDA+R LQA GLTR+VEAFNSDF LP+++CGTMN VPSSG YEIL RG+   DP  PGPPGKPLVEP+STS AR+RW +P + +E+LSP +DTY++LWVPGGSRFLPGE+VD   A C+ YDLV+ ESG ++S+Q PLR FVV+GLSSG+AYEFR++AIN+LGQG WSERS+P RM  +  N P DRVLL AASIK+LR RELE  R RAE +  +PRAYE  +L+KV+GLLDLG    HPF SVSG TPRY+DA +HPD ANVRTD GFP+I                               G   T +N    T+   KG  D   CT  L             + A  +  T       G+  S         TS   + E+   P + S P +A  S  R  E ++L RL +L VSGARS RQ+HALGLRSAYM++  GGEP FT LS    GT DYIFFSA+CLLP +VLS+PE GSL GRD+Q T L P+PG   P EWQG      Y+G+W+PYLREN  R+  ++PNE+FPSDHL+LM +LLYFEPRC STWR
Sbjct:    9 QLGEHEENRSLAGKAATSDNVALMTLLRPWQDSDHPSGACIVCTQLSEEEGYIGDAIRGLQARGLTRSVEAFNSDFSLPIVMCGTMNCVPSSGTYEILCRGIEAQDPARPGPPGKPLVEPISTSAARVRWSAPSDYSESLSPAIDTYRLLWVPGGSRFLPGETVDAHEAGCVEYDLVKAESGRVRSEQNPLRAFVVSGLSSGVAYEFRVSAINSLGQGPWSERSEPVRMPQMAGNDPVDRVLLGAASIKLLRKRELEDARRRAEERLANPRAYELRKLVKVEGLLDLGMEKIHPFGSVSGVTPRYTDASLHPDLANVRTDTGFPVIKAIEERRMXXXXXXXXXXXXXXXXXXXXXXAGSHQTRSNDEQVTSSSTKGPLDDDLCTCSL-------------DGASASTTTGGFRNGSGEGRS--------DTSGAGAGESVTRPTKSSLPPKACGSFPR--EENILLRLESLDVSGARSERQKHALGLRSAYMTHSSGGEPAFTMLSDTMVGTVDYIFFSADCLLPTQVLSIPEMGSLVGRDIQQTDLSPVPGLWAPSEWQGECGEEGYMGEWSPYLRENPLRVKHRVPNEIFPSDHLMLMANLLYFEPRCSSTWR 600          
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Match: D7G7V5_ECTSI (Fibronectin type-III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7V5_ECTSI)

HSP 1 Score: 623 bits (1606), Expect = 3.960e-214
Identity = 337/600 (56.17%), Postives = 418/600 (69.67%), Query Frame = 1
Query:    1 VSRLGEDEEDRVLAERAAISDNVALMVLLQPWEDCKHPSGACVVCTQLHDEQGPDGDAVRMLQACGLTRTVEAFNSDFHLPVIICGTMNFVPSSGAYEILGRGVAPLDPVVPGPPGKPLVEPLSTSTARIRWMSPEENNETLSPPVDTYKVLWVPGGSRFLPGESVDVPAADCLGYDLVETESGNMKSKQKPLRYFVVTGLSSGIAYEFRIAAINALGQGAWSERSDPARMLILESNPPEDRVLLSAASIKVLRNRELEGVRCRAEHKRTDPRAYEACRLIKVDGLLDLGAANSHPFHSVSGATPRYSDALIHPDSANVRTDMGFPMIMPASSLEGLSLTTANT----------TTEKVKGDPGTCTVDLTRRHPAIAKRALGERAVLAIKTQPQSTVIGDEVSWRMKST--KNVTSFETSFETKPNPNRESEPNQASLSIGRGMERDVLQRLVALKVSGARSGRQRHALGLRSAYMSYGPGGEPNFTTLS----GTFDYIFFSANCLLPVRVLSLPERGSLQGRDLQHTLLVPIPGSPPPVEWQGNAAAGAYVGQWAPYLRENRKRLTIQIPNEVFPSDHLILMVDLLYFEPRCPSTWR 1752
            ++RLGE EEDR LA +AA SDNVALM LL+PW+D  HPSGAC+VCTQL +E+G  GDA+R LQA GLTR+VEAFNSDF LP+++CGTMN  PSSG YEIL RG+   DP  PGPPGKPLVEP+STS AR+RW +P +++E+LSP +DTY++LWVPGGSRFLPGESVD   A C+ YDLV+TESG ++S+Q PLR FVV+GLSSG+AYEFR++AIN+LGQG WSERS+P RM  +  N P D+VLL AASIK+LR RELE  R RAE +  DPRAYE  +L+KV+GLLDLG    HPF SVSG TPRY+DA +HPD ANVRTD GFP+I    ++E   L++  T                                   + L +  + +++    ST  G    +R  S   ++ TS   + E+   P +   P +A  S  R  E ++L RL +L VSGARS RQ+HALGLRSAYM++  GGEP FT LS    GT DYIFFSA+CLLP +VLS+PE GSL  RD+Q T L P PG   P EWQG      Y+G+W+PYLREN  R+  +IPNE+FPSDHL+LM +L+YFEPRC STWR
Sbjct:  163 LNRLGEHEEDRSLAGKAATSDNVALMTLLRPWQDSDHPSGACIVCTQLSEEEGYIGDAIRGLQAHGLTRSVEAFNSDFSLPIVMCGTMNCAPSSGTYEILCRGIEAQDPARPGPPGKPLVEPISTSAARVRWPAPSDDSESLSPAIDTYRLLWVPGGSRFLPGESVDAHEAGCVVYDLVKTESGRVRSEQNPLRAFVVSGLSSGVAYEFRVSAINSLGQGPWSERSEPVRMPQMAGNDPVDKVLLGAASIKLLRKRELEDARRRAEERLADPRAYELRKLVKVEGLLDLGMEKIHPFGSVSGVTPRYTDAALHPDLANVRTDTGFPVI---KAIEERRLSSGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGLLDDDLSSLEDASASTTGG----FRNGSGEGRSDTSGVDTGESVTRPTKSLLPPKACGSSQR--EENILLRLDSLNVSGARSERQKHALGLRSAYMTHSSGGEPAFTMLSDTMVGTVDYIFFSADCLLPTQVLSIPEMGSLVRRDIQQTELSPAPGLWAPSEWQGECGEERYMGEWSPYLRENPLRVKHRIPNELFPSDHLMLMANLVYFEPRCSSTWR 753          
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Match: A0A2R5GWN2_9STRA (Centrosomal protein of 19 kDa n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWN2_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.510e-25
Identity = 78/225 (34.67%), Postives = 115/225 (51.11%), Query Frame = 1
Query:   61 DNVALMVLLQPWEDCKHPSGACVVCTQLHDEQGPDGDAVRMLQACGLTRTVEAFNSDFHLPVIICGTMNFVPSSGAYEILGRGVAPLDPVVPGP-PGKPLVEPLSTSTARIRWMSPEENNETLSPPVDTYKVLWVPGGSRFLPGESVDVPAADCLGYDLVETESGNMKSKQKPLRYFVVTGLSSGIAYEFRIAAINALGQGAWSERSDPARMLILESNPPEDRVL 732
            DNV ++V +QPWED  HPS   V   QL     PD +AV+  Q   L RTVE FN+DF LPV++CG+ NF+  S  Y I+ RG  P     PG    +P  + L+ S  R+RW +P   +      +  Y +    GG+        D PA     + L   E   +  ++       V+GLS+G+ YEF +AA++A+GQG +S+ + P    +    PP + +L
Sbjct:  187 DNVGVIVAIQPWEDSDHPSALLVSNVQLVTPTDPDLEAVQRKQVLMLLRTVERFNADFQLPVLMCGSFNFLQQSDLYTIVTRGKFPFQLTRPGTIDERPEAKVLAHSHVRVRWKAPSSGDAA----IQGYVIRRRCGGNT---SRGFDDPAF----FPLSAVEHDGLVWREAN-----VSGLSAGLTYEFVVAAVSAVGQGDFSQPTPPVTTRVNAQLPPINDIL 395          
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Match: K3WS66_GLOUD (Fibronectin type-III domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WS66_GLOUD)

HSP 1 Score: 115 bits (287), Expect = 3.010e-23
Identity = 72/214 (33.64%), Postives = 112/214 (52.34%), Query Frame = 1
Query:   64 NVALMVLLQPWEDCKHPSGACVVCTQLHDEQGPDGDAVRMLQACGLTRTVEAFNSDFHLPVIICGTMNFVPSSGAYEILGRGVAPLDPVVPGPPGKPLVEPLSTSTARIRWMSPEENNETLSPPVDTYKVLWVPGGSRFLPGESVDVPAADCLGY--DLVETESGNMKSKQKPLRYFVVTGLSSGIAYEFRIAAINALGQGAWSERSDPARMLI 699
            NVAL+V LQPWE  K PS  C+  TQL    GP  +++R+LQA  L R +  FN++FHLP+++ GT N +PSS  Y ++  G     P  P  P +P+++  + ++  + W +P  + E+   P+  YKV             +V   A+  +G+  ++V     N          F +T LSS + Y+FR+AA NA G   +S+ S P   L+
Sbjct:  195 NVALLVCLQPWETSKLPSALCIANTQL--VSGPTLESIRVLQAEYLCRQIAIFNANFHLPILLAGTFNALPSSDVYHVIHTGRRRPSPQAPITPERPILQEPTPTSITVTWSTPTNDVESAEAPILEYKV-------------AVKNCASATIGFMHEIVVPAHVNE---------FTMTMLSSDVTYQFRVAARNAHGWSHFSQPSAPMATLV 384          
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Match: A0A8K1FQ39_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQ39_PYTOL)

HSP 1 Score: 109 bits (272), Expect = 1.990e-21
Identity = 72/209 (34.45%), Postives = 107/209 (51.20%), Query Frame = 1
Query:   61 DNVALMVLLQPWEDCKHPSGACVVCTQLHDEQGPDGDAVRMLQACGLTRTVEAFNSDFHLPVIICGTMNFVPSSGAYEILGRGVAPLDPVVPGPPGKPLVEPLSTSTARIRWMSPEENNETLSPPVDTYKVLWVPGGSRFLPGESVDVPAADCLGYDLVETE-SGNMKSKQKPLRYFVVTGLSSGIAYEFRIAAINALGQGAWSERSDP 684
            + +AL+V LQPWE  + PS  CVV TQL    GP  + VR+LQA  L R +   N+ FHLP ++ GT N +PSS  Y ++  G     P  P    +P+ +  S S+ ++ W  PE  +     P+  YK+              +    +  LG+D+ E E  G+  + +     + VT LS+GI Y+FR+AA N  G G +S+ S P
Sbjct:  178 NRLALLVNLQPWEQSRLPSAICVVTTQL--TAGPTLEQVRVLQAEYLCREIARINASFHLPTVLAGTFNALPSSDVYHVIQTGRRRPSPEAPREMKRPVPQDASPSSVQLAWTPPECGDA----PILGYKI-------------GIKNCTSATLGFDMHEIEFDGDANTTE-----YTVTMLSAGIPYQFRMAARNLHGYGHFSQPSAP 362          
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Match: A0A1V9YUF3_9STRA (Fibronectin type-III domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YUF3_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.740e-21
Identity = 80/210 (38.10%), Postives = 106/210 (50.48%), Query Frame = 1
Query:   61 DNVALMVLLQPWEDCKHPSGACVVCTQLHDEQGPDGDAVRMLQACGLTRTVEAFNSDFHLPVIICGTMNFVPSSGAYEILGRGVAPLDPVVPGPPGKPLVEPLSTSTARIRWMSPEENNETLSPPVDTYKVLWVPGGSRFLPGESVDVPAADCLGYDL-VETESGNMKSKQKPLRYFVVTGLSSGIAYEFRIAAINALGQGAWSERSDPA 687
            DNVAL+V LQPWE+C  PS  CVV  QL     PD +AVR  Q   L   VEAFN+DF +P+I+ G+ N  P S  Y IL  G +   P  P     P V   +TS+  + W  P     ++  P+  Y+V       R + G +V       +G+   +  E  +MKS       F  T LS+G  YEFR++A NA G   WSE S P+
Sbjct:  150 DNVALLVALQPWEECAFPSPLCVVNVQLASH--PDHEAVRDAQIRYLLPEVEAFNADFQMPLIVAGSFNVRPDSQIYHILRTGRSRPGPTPPTRMDPPNVSDATTSSLTLSWEIPI----SVDGPILGYRV------DRRVNGSTV-------VGFTHEIMVEDASMKS-------FKATMLSAGSQYEFRVSAKNAFG---WSEYSRPS 330          
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Match: W4G3H3_9STRA (Fibronectin type-III domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G3H3_9STRA)

HSP 1 Score: 104 bits (259), Expect = 7.420e-20
Identity = 80/215 (37.21%), Postives = 99/215 (46.05%), Query Frame = 1
Query:   61 DNVALMVLLQPWEDCKHPSGACVVCTQLHDEQGPDGDAVRMLQACGLTRTVEAFNSDFHLPVIICGTMNFVPSSGAYEILGRGVAPLDPVVPGPPGKPLVEPLSTSTARIRWMSPEENNETLSPPVDTYKVLWVPGGSR---FLPGESVDVPAADCLGYDLVETESGNMKSKQKPLRYFVVTGLSSGIAYEFRIAAINALGQGAWSERSDPARML 696
            DNVAL+V LQPWE C+ PS  CV   QL     PD D VR  Q   L   +EAFN+DFHLP+++ G+ N  P S  Y  +  G     P  P     P     STST  + W     ++     P+  Y+ +    GS    F     +D PA        VE               F VT LS+G  YEFRIAA NA G   WSE S P++ L
Sbjct:  149 DNVALVVALQPWEQCQFPSALCVANVQLASH--PDLDLVRQHQLAYLCPQIEAFNADFHLPIVVAGSFNATPMSHVYHTMRTGRPRPAPEPPARMSPPKASDPSTSTITLSWDVAVSSHG----PILGYRFVRRVNGSTTVGFTHEIELDDPAQ-------VE---------------FKVTMLSAGNTYEFRIAARNAAG---WSEYSLPSQPL 332          
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Match: A0A024TXB5_9STRA (Fibronectin type-III domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXB5_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.450e-19
Identity = 73/224 (32.59%), Postives = 104/224 (46.43%), Query Frame = 1
Query:   61 DNVALMVLLQPWEDCKHPSGACVVCTQLHDEQGPDGDAVRMLQACGLTRTVEAFNSDFHLPVIICGTMNFVPSSGAYEILGRGVAPLDPVVPGPPGKPLVEPLSTSTARIRWMSPEENNETLSPPVDTYKVLWVPGGSRFLPGESVDVPAADCLGYDLVETESGNMKSKQKPLRYFVVTGLSSGIAYEFRIAAINALGQGAWSERSDP-----ARMLILESNPP 717
            DNVAL+V LQPWE C  PS  CV   QL     P+ + VR  Q   +   VEAFN+DFHLP++I G+ N  P S  Y  +  G    +P  P    +PL    +TST  + W+          PPV  +  +    G R +    V+        ++++      +         ++ T LS+G  YEF I+A NA G   +S  S+P     AR ++  S PP
Sbjct:  153 DNVALIVALQPWEQCHFPSAVCVANLQLASH--PNLEPVRQHQLAFVLPQVEAFNADFHLPIVIAGSFNATPVSHVYHTMRTGRPRPEPEPPARMNRPLARDPTTSTITLSWV----------PPVSAHGPIL---GYRLV--RRVNCSTTIGFSHEVMLDNPSQVD--------YIATMLSAGNTYEFCISAKNAAGWSEYSIPSEPIQTLKARAIVDPSKPP 351          
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Match: A0A1W0A8X2_9STRA (Fibronectin type-III domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8X2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.830e-10
Identity = 52/155 (33.55%), Postives = 73/155 (47.10%), Query Frame = 1
Query: 1327 ALKVSGARSGRQRHALGLRSAYMSYGPGGEPNFTTLS----GTFDYIFFSANCLLPVRVLSLPERGSLQGRDLQHTLLVPIPG--SPPPVEWQGNAAAGA-----YVGQWAP--YLRENRKRLTIQIPNEVFPSDHLILMVDLLYFEPRCPSTWR 1752
            AL   G R     H     SAY  Y  GGEP +T  S    GT DYIFF+   L   ++L++P   SL+G+D +   L+      +  P  W      G      Y G+W P  +  +N K     +PN++F SDH+ LMV L + E   P++W 
Sbjct:  403 ALAFRGDREEHLEHFEVFESAYCRYNAGGEPVYTFASDVFTGTIDYIFFTKKELAAFQLLTIPTLSSLKGQDAREPSLITDHDYLTWKPEGWDTKPKNGLVGNPKYSGEWPPDAFRVQNPKCEHHWLPNDLFASDHIALMVVLAFREEELPTSWN 557          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14642.3162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5L283_9PHAE1.980e-21755.45Fibronectin type-III domain-containing protein n=1... [more]
D7G7V5_ECTSI3.960e-21456.17Fibronectin type-III domain-containing protein n=1... [more]
A0A2R5GWN2_9STRA2.510e-2534.67Centrosomal protein of 19 kDa n=1 Tax=Hondaea ferm... [more]
K3WS66_GLOUD3.010e-2333.64Fibronectin type-III domain-containing protein n=1... [more]
A0A8K1FQ39_PYTOL1.990e-2134.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YUF3_9STRA3.740e-2138.10Fibronectin type-III domain-containing protein n=1... [more]
W4G3H3_9STRA7.420e-2037.21Fibronectin type-III domain-containing protein n=2... [more]
A0A024TXB5_9STRA2.450e-1932.59Fibronectin type-III domain-containing protein n=2... [more]
A0A1W0A8X2_9STRA4.830e-1033.55Fibronectin type-III domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14642contigH-elongata_contig14642:6078..7888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score627.1
Seed ortholog evalue8.3e-177
Seed eggNOG ortholog2880.D7G7V5
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGsCOG5239@1,KOG0620@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEndonuclease/exonuclease/phosphatase
Ec32 orthologEc-06_000170.1
Exons2
Model size1755
Cds size1755
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.6655042-CDS-H-elongata_contig14642:6077..66261622929870.6655042-CDS-H-elongata_contig14642:6077..6626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14642 6078..6626 -
1691679189.5931797-CDS-H-elongata_contig14642:6077..66261691679189.5931797-CDS-H-elongata_contig14642:6077..6626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14642 6078..6626 -
1622929870.6829405-CDS-H-elongata_contig14642:6682..78881622929870.6829405-CDS-H-elongata_contig14642:6682..7888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14642 6683..7888 -
1691679189.605282-CDS-H-elongata_contig14642:6682..78881691679189.605282-CDS-H-elongata_contig14642:6682..7888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14642 6683..7888 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14642.3162.1prot_H-elongata_contig14642.3162.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14642 6078..7888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14642.3162.1

>prot_H-elongata_contig14642.3162.1 ID=prot_H-elongata_contig14642.3162.1|Name=mRNA_H-elongata_contig14642.3162.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=585bp
VSRLGEDEEDRVLAERAAISDNVALMVLLQPWEDCKHPSGACVVCTQLHD
EQGPDGDAVRMLQACGLTRTVEAFNSDFHLPVIICGTMNFVPSSGAYEIL
GRGVAPLDPVVPGPPGKPLVEPLSTSTARIRWMSPEENNETLSPPVDTYK
VLWVPGGSRFLPGESVDVPAADCLGYDLVETESGNMKSKQKPLRYFVVTG
LSSGIAYEFRIAAINALGQGAWSERSDPARMLILESNPPEDRVLLSAASI
KVLRNRELEGVRCRAEHKRTDPRAYEACRLIKVDGLLDLGAANSHPFHSV
SGATPRYSDALIHPDSANVRTDMGFPMIMPASSLEGLSLTTANTTTEKVK
GDPGTCTVDLTRRHPAIAKRALGERAVLAIKTQPQSTVIGDEVSWRMKST
KNVTSFETSFETKPNPNRESEPNQASLSIGRGMERDVLQRLVALKVSGAR
SGRQRHALGLRSAYMSYGPGGEPNFTTLSGTFDYIFFSANCLLPVRVLSL
PERGSLQGRDLQHTLLVPIPGSPPPVEWQGNAAAGAYVGQWAPYLRENRK
RLTIQIPNEVFPSDHLILMVDLLYFEPRCPSTWR*
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mRNA from alignment at H-elongata_contig14642:6078..7888-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14642.3162.1 ID=mRNA_H-elongata_contig14642.3162.1|Name=mRNA_H-elongata_contig14642.3162.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1811bp|location=Sequence derived from alignment at H-elongata_contig14642:6078..7888- (Himanthalia elongata Himel1 dioecious)
GTGAGTAGGCTAGGCGAAGACGAAGAAGATCGGGTACTGGCGGAAAGGGC AGCAATTAGTGACAATGTTGCGCTAATGGTACTTCTACAGCCCTGGGAAG ACTGTAAACATCCTTCTGGTGCTTGCGTCGTGTGCACACAACTCCACGAC GAACAGGGCCCCGATGGGGATGCTGTGCGTATGCTTCAGGCTTGTGGCTT GACTCGAACCGTTGAAGCGTTCAATTCTGATTTCCATCTTCCAGTAATTA TCTGCGGGACGATGAATTTCGTCCCAAGCAGTGGAGCGTACGAAATCCTG GGCCGTGGAGTAGCGCCTCTAGATCCGGTTGTACCGGGCCCTCCAGGTAA ACCCCTCGTGGAACCCTTATCAACAAGCACCGCGCGCATTCGCTGGATGT CACCCGAGGAAAACAACGAGACTCTGAGTCCACCAGTGGATACATACAAG GTGCTCTGGGTCCCGGGAGGCAGCAGGTTTCTACCCGGCGAGAGCGTTGA CGTCCCAGCAGCAGATTGTCTCGGGTACGATCTTGTCGAAACCGAGAGCG GTAACATGAAATCGAAACAGAAGCCCCTGCGATATTTTGTTGTCACGGGT CTTAGCTCAGGCATCGCGTACGAGTTCCGAATCGCGGCTATCAACGCCCT TGGTCAAGGCGCATGGAGTGAGCGGTCAGATCCTGCTCGTATGCTTATTT TGGAAAGCAACCCTCCGGAAGATAGGGTGCTGCTATCGGCTGCCTCTATC AAGGTGCTGAGAAATCGAGAACTCGAGGGAGTACGCTGTAGGGCCGAGCA CAAACGCACCGATCCCCGGGCGTACGAAGCTTGCAGGCTAATCAAGGTCG ACGGACTGCTAGATCTCGGAGCGGCGAACTCGCACCCCTTTCATTCCGTG TCTGGTGCGACGCCACGATACTCGGACGCCCTGATCCATCCCGACTCCGC CAATGTTCGCACCGATATGGGCTTCCCAATGATCATGCCTGCGTCCTCTT TAGAGGGTTTATCTCTCACGACTGCAAATACCACAACGGAAAAGGTGAAA GGCGACCCCGGCACTTGTACTGTAGACCTAACGCGCCGTCATCCGGCGAT CGCGAAACGCGCTTTAGGGGAGCGCGCAGTGTTGGCCATAAAAACTCAAC CGCAGTCGACCGTAATCGGAGATGAGGTATCATGGAGAATGAAGAGCACG AAAAATGTCGACCGGGATTACTGTTTCTGAACGCTGCTCGACTCTCGCCT TTTACTTCACAGGTGACATCATTCGAGACATCATTCGAGACAAAACCGAA CCCTAACCGTGAGTCCGAACCAAATCAGGCGAGTCTCTCTATAGGGAGAG GAATGGAACGAGACGTCTTGCAACGATTGGTAGCTCTCAAGGTGAGCGGC GCTAGGAGCGGGCGACAGAGGCACGCTCTTGGCCTTCGCAGCGCGTACAT GTCGTACGGCCCAGGCGGGGAACCCAACTTTACGACGCTTTCGGGAACTT TCGATTACATCTTCTTTAGCGCCAACTGTTTGCTGCCCGTGCGAGTTCTT TCGCTGCCCGAGAGGGGAAGCCTACAAGGACGCGATCTCCAGCACACTTT ACTGGTTCCAATCCCGGGATCACCGCCGCCTGTAGAGTGGCAAGGGAATG CCGCAGCCGGTGCTTACGTTGGGCAGTGGGCACCGTACTTACGGGAGAAC CGTAAGAGACTGACAATTCAAATTCCTAACGAGGTGTTCCCGTCGGATCA CCTCATATTGATGGTCGATCTGCTTTACTTTGAGCCACGCTGTCCGTCTA CGTGGCGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig14642:6078..7888-

>mRNA_H-elongata_contig14642.3162.1 ID=mRNA_H-elongata_contig14642.3162.1|Name=mRNA_H-elongata_contig14642.3162.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3510bp|location=Sequence derived from alignment at H-elongata_contig14642:6078..7888- (Himanthalia elongata Himel1 dioecious)
GTGAGTAGGCTAGGCGAAGACGAAGAAGATCGGGTACTGGCGGAAAGGGC
AGCAATTAGTGACAATGTTGCGCTAATGGTACTTCTACAGCCCTGGGAAG
ACTGTAAACATCCTTCTGGTGCTTGCGTCGTGTGCACACAACTCCACGAC
GAACAGGGCCCCGATGGGGATGCTGTGCGTATGCTTCAGGCTTGTGGCTT
GACTCGAACCGTTGAAGCGTTCAATTCTGATTTCCATCTTCCAGTAATTA
TCTGCGGGACGATGAATTTCGTCCCAAGCAGTGGAGCGTACGAAATCCTG
GGCCGTGGAGTAGCGCCTCTAGATCCGGTTGTACCGGGCCCTCCAGGTAA
ACCCCTCGTGGAACCCTTATCAACAAGCACCGCGCGCATTCGCTGGATGT
CACCCGAGGAAAACAACGAGACTCTGAGTCCACCAGTGGATACATACAAG
GTGCTCTGGGTCCCGGGAGGCAGCAGGTTTCTACCCGGCGAGAGCGTTGA
CGTCCCAGCAGCAGATTGTCTCGGGTACGATCTTGTCGAAACCGAGAGCG
GTAACATGAAATCGAAACAGAAGCCCCTGCGATATTTTGTTGTCACGGGT
CTTAGCTCAGGCATCGCGTACGAGTTCCGAATCGCGGCTATCAACGCCCT
TGGTCAAGGCGCATGGAGTGAGCGGTCAGATCCTGCTCGTATGCTTATTT
TGGAAAGCAACCCTCCGGAAGATAGGGTGCTGCTATCGGCTGCCTCTATC
AAGGTGCTGAGAAATCGAGAACTCGAGGGAGTACGCTGTAGGGCCGAGCA
CAAACGCACCGATCCCCGGGCGTACGAAGCTTGCAGGCTAATCAAGGTCG
ACGGACTGCTAGATCTCGGAGCGGCGAACTCGCACCCCTTTCATTCCGTG
TCTGGTGCGACGCCACGATACTCGGACGCCCTGATCCATCCCGACTCCGC
CAATGTTCGCACCGATATGGGCTTCCCAATGATCATGCCTGCGTCCTCTT
TAGAGGGTTTATCTCTCACGACTGCAAATACCACAACGGAAAAGGTGAAA
GGCGACCCCGGCACTTGTACTGTAGACCTAACGCGCCGTCATCCGGCGAT
CGCGAAACGCGCTTTAGGGGAGCGCGCAGTGTTGGCCATAAAAACTCAAC
CGCAGTCGACCGTAATCGGAGATGAGGTATCATGGAGAATGAAGAGCACG
AAAAATGTGAGTAGGCTAGGCGAAGACGAAGAAGATCGGGTACTGGCGGA
AAGGGCAGCAATTAGTGACAATGTTGCGCTAATGGTACTTCTACAGCCCT
GGGAAGACTGTAAACATCCTTCTGGTGCTTGCGTCGTGTGCACACAACTC
CACGACGAACAGGGCCCCGATGGGGATGCTGTGCGTATGCTTCAGGCTTG
TGGCTTGACTCGAACCGTTGAAGCGTTCAATTCTGATTTCCATCTTCCAG
TAATTATCTGCGGGACGATGAATTTCGTCCCAAGCAGTGGAGCGTACGAA
ATCCTGGGCCGTGGAGTAGCGCCTCTAGATCCGGTTGTACCGGGCCCTCC
AGGTAAACCCCTCGTGGAACCCTTATCAACAAGCACCGCGCGCATTCGCT
GGATGTCACCCGAGGAAAACAACGAGACTCTGAGTCCACCAGTGGATACA
TACAAGGTGCTCTGGGTCCCGGGAGGCAGCAGGTTTCTACCCGGCGAGAG
CGTTGACGTCCCAGCAGCAGATTGTCTCGGGTACGATCTTGTCGAAACCG
AGAGCGGTAACATGAAATCGAAACAGAAGCCCCTGCGATATTTTGTTGTC
ACGGGTCTTAGCTCAGGCATCGCGTACGAGTTCCGAATCGCGGCTATCAA
CGCCCTTGGTCAAGGCGCATGGAGTGAGCGGTCAGATCCTGCTCGTATGC
TTATTTTGGAAAGCAACCCTCCGGAAGATAGGGTGCTGCTATCGGCTGCC
TCTATCAAGGTGCTGAGAAATCGAGAACTCGAGGGAGTACGCTGTAGGGC
CGAGCACAAACGCACCGATCCCCGGGCGTACGAAGCTTGCAGGCTAATCA
AGGTCGACGGACTGCTAGATCTCGGAGCGGCGAACTCGCACCCCTTTCAT
TCCGTGTCTGGTGCGACGCCACGATACTCGGACGCCCTGATCCATCCCGA
CTCCGCCAATGTTCGCACCGATATGGGCTTCCCAATGATCATGCCTGCGT
CCTCTTTAGAGGGTTTATCTCTCACGACTGCAAATACCACAACGGAAAAG
GTGAAAGGCGACCCCGGCACTTGTACTGTAGACCTAACGCGCCGTCATCC
GGCGATCGCGAAACGCGCTTTAGGGGAGCGCGCAGTGTTGGCCATAAAAA
CTCAACCGCAGTCGACCGTAATCGGAGATGAGGTATCATGGAGAATGAAG
AGCACGAAAAATGTGACATCATTCGAGACATCATTCGAGACAAAACCGAA
CCCTAACCGTGAGTCCGAACCAAATCAGGCGAGTCTCTCTATAGGGAGAG
GAATGGAACGAGACGTCTTGCAACGATTGGTAGCTCTCAAGGTGAGCGGC
GCTAGGAGCGGGCGACAGAGGCACGCTCTTGGCCTTCGCAGCGCGTACAT
GTCGTACGGCCCAGGCGGGGAACCCAACTTTACGACGCTTTCGGGAACTT
TCGATTACATCTTCTTTAGCGCCAACTGTTTGCTGCCCGTGCGAGTTCTT
TCGCTGCCCGAGAGGGGAAGCCTACAAGGACGCGATCTCCAGCACACTTT
ACTGGTTCCAATCCCGGGATCACCGCCGCCTGTAGAGTGGCAAGGGAATG
CCGCAGCCGGTGCTTACGTTGGGCAGTGGGCACCGTACTTACGGGAGAAC
CGTAAGAGACTGACAATTCAAATTCCTAACGAGGTGTTCCCGTCGGATCA
CCTCATATTGATGGTCGATCTGCTTTACTTTGAGCCACGCTGTCCGTCTA
CGTGGCGCTGAGTGACATCATTCGAGACATCATTCGAGACAAAACCGAAC
CCTAACCGTGAGTCCGAACCAAATCAGGCGAGTCTCTCTATAGGGAGAGG
AATGGAACGAGACGTCTTGCAACGATTGGTAGCTCTCAAGGTGAGCGGCG
CTAGGAGCGGGCGACAGAGGCACGCTCTTGGCCTTCGCAGCGCGTACATG
TCGTACGGCCCAGGCGGGGAACCCAACTTTACGACGCTTTCGGGAACTTT
CGATTACATCTTCTTTAGCGCCAACTGTTTGCTGCCCGTGCGAGTTCTTT
CGCTGCCCGAGAGGGGAAGCCTACAAGGACGCGATCTCCAGCACACTTTA
CTGGTTCCAATCCCGGGATCACCGCCGCCTGTAGAGTGGCAAGGGAATGC
CGCAGCCGGTGCTTACGTTGGGCAGTGGGCACCGTACTTACGGGAGAACC
GTAAGAGACTGACAATTCAAATTCCTAACGAGGTGTTCCCGTCGGATCAC
CTCATATTGATGGTCGATCTGCTTTACTTTGAGCCACGCTGTCCGTCTAC
GTGGCGCTGA
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