mRNA_H-elongata_contig146244.3152.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146244.3152.1
Unique NamemRNA_H-elongata_contig146244.3152.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: D7FYL3_ECTSI (MutS protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL3_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 1.010e-53
Identity = 95/107 (88.79%), Postives = 102/107 (95.33%), Query Frame = 1
Query:    1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
            QQV DLKA+HPGVLLLVECGYR RFFG+DAL AAKVLRIYAH++HNF VASVP+FRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTE+GKKSGTFKREL AVF+Q
Sbjct:  366 QQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQ 472          
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: A0A4D9D7L2_9STRA (MutS_I domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7L2_9STRA)

HSP 1 Score: 149 bits (376), Expect = 3.410e-42
Identity = 73/107 (68.22%), Postives = 90/107 (84.11%), Query Frame = 1
Query:    1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
            QQV  LK  HP  LLLVECGYR+RFFGEDAL A++VL IY +++H F+VAS+P+ R+ VHL+RLV+AG+KVGVVRQ E+AALKAAGL+ SG KSGTF+REL  VFT+
Sbjct:  170 QQVVALKRAHPDTLLLVECGYRVRFFGEDALHASQVLGIYTYIDHAFYVASIPTLRIKVHLKRLVEAGFKVGVVRQTETAALKAAGLSASGAKSGTFQRELAGVFTR 276          
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: W7TSS8_9STRA (Dna mismatch repair protein msh3 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSS8_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.720e-41
Identity = 73/107 (68.22%), Postives = 90/107 (84.11%), Query Frame = 1
Query:    1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
            QQV  LK  HP  LLLVECGYR+RFFGEDAL A++VL IY +++H F+VAS+P+ R+ VHL+RLV+AG+KVGVVRQ E+AALKAAGL+ SG KSGTF+REL  VFT+
Sbjct:  278 QQVVALKRAHPDTLLLVECGYRVRFFGEDALHASQVLGIYTYIDHAFYVASIPTLRIKVHLKRLVEAGFKVGVVRQTETAALKAAGLSASGAKSGTFQRELAGVFTR 384          
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: A0A2P5CUR2_PARAD (DNA mismatch repair n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5CUR2_PARAD)

HSP 1 Score: 131 bits (329), Expect = 1.740e-34
Identity = 68/107 (63.55%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
            QQV DLK +HP VLL+VE GY+ RFFGEDA TAA+VL IYAH++HNF  ASVP+FRL+VH+RRLV AG+KVGVV+Q E+AA+KA GL     + G F R L A++T+
Sbjct:  131 QQVVDLKKKHPDVLLMVEVGYKYRFFGEDAETAARVLGIYAHMDHNFLTASVPTFRLSVHVRRLVSAGFKVGVVKQTETAAMKAHGLN----RLGPFCRGLSALYTK 233          
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: A0A0V0HD09_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HD09_SOLCH)

HSP 1 Score: 126 bits (316), Expect = 9.550e-34
Identity = 64/107 (59.81%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
            QQV +LK ++P VLL++E GYR RFFG+DA  AA+VL IYAH++HNF  ASVP+FRL +H+RRLV AGYKVGVV+Q E+AA+KA G      K G F R L A++T+
Sbjct:  127 QQVVELKTKYPDVLLMIEVGYRYRFFGQDAENAARVLGIYAHMDHNFLTASVPTFRLNIHVRRLVSAGYKVGVVKQTETAAIKAHG----SNKLGPFSRGLSALYTK 229          
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: A0A5B7BU35_DAVIN (MutS_I domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BU35_DAVIN)

HSP 1 Score: 127 bits (319), Expect = 1.130e-33
Identity = 66/107 (61.68%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
            QQV DLKA++P VLL+VE GYR RFFGEDA  AA+VL IYAH++HNF  AS+P+FRL VH+RRLV+AGYKVGVV+Q E+ A+KA G      + G F R L A++T+
Sbjct:  173 QQVVDLKAKYPDVLLMVEVGYRYRFFGEDAENAARVLGIYAHMDHNFLTASIPTFRLNVHVRRLVNAGYKVGVVKQTETTAIKAHG----SNRLGPFCRGLSALYTK 275          
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: A0A5C7INN3_9ROSI (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7INN3_9ROSI)

HSP 1 Score: 132 bits (332), Expect = 1.210e-33
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
            QQV DLK +HP VLL++E GYR RFFG+DA TAA+VL IYAHVNHNF  ASVP+FRL VH+RRLV AGYKVGVV+Q E+AA+KA G      + G F R L A++T+
Sbjct:   97 QQVVDLKKKHPDVLLMIEVGYRFRFFGDDAETAARVLGIYAHVNHNFATASVPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHG----PGRIGPFGRGLSALYTK 199          
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: A0A388JNR2_CHABU (MutS_I domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JNR2_CHABU)

HSP 1 Score: 131 bits (330), Expect = 2.030e-33
Identity = 66/107 (61.68%), Postives = 86/107 (80.37%), Query Frame = 1
Query:    1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
            QQV +L++++P VLL+VE GY+ RFFGEDA TAA+VL IY+HV+HNF  AS+P+FRL VH+RRLV+AGYKVGVVRQ E+AA+KA G      K G F R+L A++T+
Sbjct:  474 QQVLELRSQYPDVLLMVEVGYKYRFFGEDAETAARVLGIYSHVDHNFVTASIPTFRLHVHVRRLVEAGYKVGVVRQTETAAIKAHG----ANKGGPFSRQLSALYTR 576          
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: A0A1S3X367_TOBAC (DNA mismatch repair protein MSH3-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S3X367_TOBAC)

HSP 1 Score: 129 bits (323), Expect = 3.660e-33
Identity = 65/107 (60.75%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
            QQV +LKA++P +LL++E GY+ RFFG+DA  AA+VL IYAH++HNF  ASVP+FRL VH+RRLV+AGYKVGVV+Q E+AA+KA G      K G F REL A++T+
Sbjct:  121 QQVVELKAKYPDILLMIEVGYKYRFFGQDAENAARVLGIYAHMDHNFLTASVPTFRLNVHVRRLVNAGYKVGVVKQTETAAIKAHG----SNKLGPFGRELSALYTK 223          
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: A0A6P5TVC9_PRUAV (DNA mismatch repair protein MSH3-like n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5TVC9_PRUAV)

HSP 1 Score: 128 bits (321), Expect = 8.080e-33
Identity = 67/107 (62.62%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
            QQV DLK R+P VLL+VE GY+ RFFG+DA  AA+VL IYAH++HNF  ASVP+FRL VH+RRLV AGYKVGVV+Q E+AA+KA G      +SG F R L A++T+
Sbjct:  129 QQVVDLKKRYPDVLLMVEVGYKYRFFGQDAEIAARVLGIYAHMDHNFLTASVPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHG----SNRSGPFGRGLSALYTK 231          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYL3_ECTSI1.010e-5388.79MutS protein homolog 3 n=1 Tax=Ectocarpus siliculo... [more]
A0A4D9D7L2_9STRA3.410e-4268.22MutS_I domain-containing protein n=1 Tax=Nannochlo... [more]
W7TSS8_9STRA2.720e-4168.22Dna mismatch repair protein msh3 (Fragment) n=1 Ta... [more]
A0A2P5CUR2_PARAD1.740e-3463.55DNA mismatch repair n=2 Tax=Cannabaceae TaxID=3481... [more]
A0A0V0HD09_SOLCH9.550e-3459.81Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A5B7BU35_DAVIN1.130e-3361.68MutS_I domain-containing protein (Fragment) n=1 Ta... [more]
A0A5C7INN3_9ROSI1.210e-3364.49DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A388JNR2_CHABU2.030e-3361.68MutS_I domain-containing protein n=1 Tax=Chara bra... [more]
A0A1S3X367_TOBAC3.660e-3360.75DNA mismatch repair protein MSH3-like n=1 Tax=Nico... [more]
A0A6P5TVC9_PRUAV8.080e-3362.62DNA mismatch repair protein MSH3-like n=1 Tax=Prun... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146244contigH-elongata_contig146244:622..1634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.8
Seed ortholog evalue1.6e-46
Seed eggNOG ortholog2880.D7FYL3
KEGG koko:K08736
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
EggNOG free text desc.Component of the post-replicative DNA mismatch repair system (MMR)
EggNOG OGsCOG0249@1,KOG0218@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMutS protein homolog 3
Ec32 orthologEc-26_002670.1
Exons3
Model size321
Cds size321
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146244.3152.1prot_H-elongata_contig146244.3152.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146244 622..1634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929869.6213238-CDS-H-elongata_contig146244:621..7321622929869.6213238-CDS-H-elongata_contig146244:621..732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146244 622..732 -
1691679189.1708267-CDS-H-elongata_contig146244:621..7321691679189.1708267-CDS-H-elongata_contig146244:621..732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146244 622..732 -
1622929869.6360416-CDS-H-elongata_contig146244:1073..11781622929869.6360416-CDS-H-elongata_contig146244:1073..1178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146244 1074..1178 -
1691679189.1811705-CDS-H-elongata_contig146244:1073..11781691679189.1811705-CDS-H-elongata_contig146244:1073..1178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146244 1074..1178 -
1622929869.6476166-CDS-H-elongata_contig146244:1529..16341622929869.6476166-CDS-H-elongata_contig146244:1529..1634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146244 1530..1634 -
1691679189.1885724-CDS-H-elongata_contig146244:1529..16341691679189.1885724-CDS-H-elongata_contig146244:1529..1634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146244 1530..1634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146244.3152.1

>prot_H-elongata_contig146244.3152.1 ID=prot_H-elongata_contig146244.3152.1|Name=mRNA_H-elongata_contig146244.3152.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVA
SVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRE
LVAVFTQ
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mRNA from alignment at H-elongata_contig146244:622..1634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146244.3152.1 ID=mRNA_H-elongata_contig146244.3152.1|Name=mRNA_H-elongata_contig146244.3152.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1013bp|location=Sequence derived from alignment at H-elongata_contig146244:622..1634- (Himanthalia elongata Himel1 dioecious)
CAGCAAGTGTCCGATCTGAAGGCACGGCACCCAGGGGTGTTGCTTCTTGT AGAGTGCGGCTACCGCCTTAGGTTCTTCGGAGAAGACGCCCTGACTGCCG CCAAGGTAGGACATGGCGATGGATGATGACAGGGGAGTGTGTCTCCACTA TAATGTTGTGTAAGCGTTTGTGGGTAGAAGGGAAACAGCGGTGTCAGATT TTCCGAAGTTGTGCAATTACTCAAACTCTCTTTTGAAACACATGCTTTGT GGGTTTTCCACCGTCAAGGCCAATATTTACTCTGGTGACGTCTATGGCGA ACGCTTACTGCGATCATGTACAGCAACATCGTTACGCCGTTCGCTATACC GTGACGGGTAGAGTGCTTCCCTTGCCCTTGCCCTTGCCGAATATCCACCG ACAGACAAACCCGCCGTTCACGAAACTCCTACCGTGGTGCGCCCGTCGCG AGCCAGGTGTTGCGGATTTACGCGCACGTGAACCACAATTTCCATGTCGC GTCGGTTCCCTCCTTCCGCCTTGCTGTCCACCTGAGAAGGCTTGTGGACG CCGGATACAAGGTGAAATTCAGGAAATTGATGCAGATGCTCTACCGAGCT GAACTCTACGGCCGAAAAGTCGCCGCGTGGTTCGCTTTCTGGTGTTGTTT TCGCAACACACAGAGCTGGTTCTTGTGGCGTGCCCTGGACTCGAGTTTGG TACTATACCCCGAGGTGACCATATGCCCTAACGGCTCATATTGGGGCGTC CATGTTCACTATATATATATCCAACCCGTTACACGGCGGTTGACCAAGGT GACAAGCGATCGAAAATACCATGGCTCAAAAAAGATCCGGATCGTAACGC TTGAGCTAAACCTTTAGGCACAAAATTACCGCAATTCTCCATGCAACAAA AGGTGGGCGTCGTTCGCCAGGCGGAATCGGCGGCGCTCAAGGCTGCTGGG CTGACGGAATCCGGCAAAAAGTCGGGCACTTTCAAGCGCGAGCTTGTGGC CGTATTCACTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig146244:622..1634-

>mRNA_H-elongata_contig146244.3152.1 ID=mRNA_H-elongata_contig146244.3152.1|Name=mRNA_H-elongata_contig146244.3152.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig146244:622..1634- (Himanthalia elongata Himel1 dioecious)
CAGCAAGTGTCCGATCTGAAGGCACGGCACCCAGGGGTGTTGCTTCTTGT
AGAGTGCGGCTACCGCCTTAGGTTCTTCGGAGAAGACGCCCTGACTGCCG
CCAAGCAGCAAGTGTCCGATCTGAAGGCACGGCACCCAGGGGTGTTGCTT
CTTGTAGAGTGCGGCTACCGCCTTAGGTTCTTCGGAGAAGACGCCCTGAC
TGCCGCCAAGGTGTTGCGGATTTACGCGCACGTGAACCACAATTTCCATG
TCGCGTCGGTTCCCTCCTTCCGCCTTGCTGTCCACCTGAGAAGGCTTGTG
GACGCCGGATACAAGGTGTTGCGGATTTACGCGCACGTGAACCACAATTT
CCATGTCGCGTCGGTTCCCTCCTTCCGCCTTGCTGTCCACCTGAGAAGGC
TTGTGGACGCCGGATACAAGGTGGGCGTCGTTCGCCAGGCGGAATCGGCG
GCGCTCAAGGCTGCTGGGCTGACGGAATCCGGCAAAAAGTCGGGCACTTT
CAAGCGCGAGCTTGTGGCCGTATTCACTCAGGTGGGCGTCGTTCGCCAGG
CGGAATCGGCGGCGCTCAAGGCTGCTGGGCTGACGGAATCCGGCAAAAAG
TCGGGCACTTTCAAGCGCGAGCTTGTGGCCGTATTCACTCAG
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