mRNA_H-elongata_contig146244.3152.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: D7FYL3_ECTSI (MutS protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL3_ECTSI) HSP 1 Score: 189 bits (481), Expect = 1.010e-53 Identity = 95/107 (88.79%), Postives = 102/107 (95.33%), Query Frame = 1
Query: 1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
QQV DLKA+HPGVLLLVECGYR RFFG+DAL AAKVLRIYAH++HNF VASVP+FRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTE+GKKSGTFKREL AVF+Q
Sbjct: 366 QQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQ 472
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: A0A4D9D7L2_9STRA (MutS_I domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7L2_9STRA) HSP 1 Score: 149 bits (376), Expect = 3.410e-42 Identity = 73/107 (68.22%), Postives = 90/107 (84.11%), Query Frame = 1
Query: 1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
QQV LK HP LLLVECGYR+RFFGEDAL A++VL IY +++H F+VAS+P+ R+ VHL+RLV+AG+KVGVVRQ E+AALKAAGL+ SG KSGTF+REL VFT+
Sbjct: 170 QQVVALKRAHPDTLLLVECGYRVRFFGEDALHASQVLGIYTYIDHAFYVASIPTLRIKVHLKRLVEAGFKVGVVRQTETAALKAAGLSASGAKSGTFQRELAGVFTR 276
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: W7TSS8_9STRA (Dna mismatch repair protein msh3 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSS8_9STRA) HSP 1 Score: 149 bits (376), Expect = 2.720e-41 Identity = 73/107 (68.22%), Postives = 90/107 (84.11%), Query Frame = 1
Query: 1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
QQV LK HP LLLVECGYR+RFFGEDAL A++VL IY +++H F+VAS+P+ R+ VHL+RLV+AG+KVGVVRQ E+AALKAAGL+ SG KSGTF+REL VFT+
Sbjct: 278 QQVVALKRAHPDTLLLVECGYRVRFFGEDALHASQVLGIYTYIDHAFYVASIPTLRIKVHLKRLVEAGFKVGVVRQTETAALKAAGLSASGAKSGTFQRELAGVFTR 384
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: A0A2P5CUR2_PARAD (DNA mismatch repair n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5CUR2_PARAD) HSP 1 Score: 131 bits (329), Expect = 1.740e-34 Identity = 68/107 (63.55%), Postives = 85/107 (79.44%), Query Frame = 1
Query: 1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
QQV DLK +HP VLL+VE GY+ RFFGEDA TAA+VL IYAH++HNF ASVP+FRL+VH+RRLV AG+KVGVV+Q E+AA+KA GL + G F R L A++T+
Sbjct: 131 QQVVDLKKKHPDVLLMVEVGYKYRFFGEDAETAARVLGIYAHMDHNFLTASVPTFRLSVHVRRLVSAGFKVGVVKQTETAAMKAHGLN----RLGPFCRGLSALYTK 233
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: A0A0V0HD09_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HD09_SOLCH) HSP 1 Score: 126 bits (316), Expect = 9.550e-34 Identity = 64/107 (59.81%), Postives = 82/107 (76.64%), Query Frame = 1
Query: 1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
QQV +LK ++P VLL++E GYR RFFG+DA AA+VL IYAH++HNF ASVP+FRL +H+RRLV AGYKVGVV+Q E+AA+KA G K G F R L A++T+
Sbjct: 127 QQVVELKTKYPDVLLMIEVGYRYRFFGQDAENAARVLGIYAHMDHNFLTASVPTFRLNIHVRRLVSAGYKVGVVKQTETAAIKAHG----SNKLGPFSRGLSALYTK 229
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: A0A5B7BU35_DAVIN (MutS_I domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BU35_DAVIN) HSP 1 Score: 127 bits (319), Expect = 1.130e-33 Identity = 66/107 (61.68%), Postives = 83/107 (77.57%), Query Frame = 1
Query: 1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
QQV DLKA++P VLL+VE GYR RFFGEDA AA+VL IYAH++HNF AS+P+FRL VH+RRLV+AGYKVGVV+Q E+ A+KA G + G F R L A++T+
Sbjct: 173 QQVVDLKAKYPDVLLMVEVGYRYRFFGEDAENAARVLGIYAHMDHNFLTASIPTFRLNVHVRRLVNAGYKVGVVKQTETTAIKAHG----SNRLGPFCRGLSALYTK 275
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: A0A5C7INN3_9ROSI (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7INN3_9ROSI) HSP 1 Score: 132 bits (332), Expect = 1.210e-33 Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 1
Query: 1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
QQV DLK +HP VLL++E GYR RFFG+DA TAA+VL IYAHVNHNF ASVP+FRL VH+RRLV AGYKVGVV+Q E+AA+KA G + G F R L A++T+
Sbjct: 97 QQVVDLKKKHPDVLLMIEVGYRFRFFGDDAETAARVLGIYAHVNHNFATASVPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHG----PGRIGPFGRGLSALYTK 199
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: A0A388JNR2_CHABU (MutS_I domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JNR2_CHABU) HSP 1 Score: 131 bits (330), Expect = 2.030e-33 Identity = 66/107 (61.68%), Postives = 86/107 (80.37%), Query Frame = 1
Query: 1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
QQV +L++++P VLL+VE GY+ RFFGEDA TAA+VL IY+HV+HNF AS+P+FRL VH+RRLV+AGYKVGVVRQ E+AA+KA G K G F R+L A++T+
Sbjct: 474 QQVLELRSQYPDVLLMVEVGYKYRFFGEDAETAARVLGIYSHVDHNFVTASIPTFRLHVHVRRLVEAGYKVGVVRQTETAAIKAHG----ANKGGPFSRQLSALYTR 576
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: A0A1S3X367_TOBAC (DNA mismatch repair protein MSH3-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S3X367_TOBAC) HSP 1 Score: 129 bits (323), Expect = 3.660e-33 Identity = 65/107 (60.75%), Postives = 85/107 (79.44%), Query Frame = 1
Query: 1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
QQV +LKA++P +LL++E GY+ RFFG+DA AA+VL IYAH++HNF ASVP+FRL VH+RRLV+AGYKVGVV+Q E+AA+KA G K G F REL A++T+
Sbjct: 121 QQVVELKAKYPDILLMIEVGYKYRFFGQDAENAARVLGIYAHMDHNFLTASVPTFRLNVHVRRLVNAGYKVGVVKQTETAAIKAHG----SNKLGPFGRELSALYTK 223
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Match: A0A6P5TVC9_PRUAV (DNA mismatch repair protein MSH3-like n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5TVC9_PRUAV) HSP 1 Score: 128 bits (321), Expect = 8.080e-33 Identity = 67/107 (62.62%), Postives = 83/107 (77.57%), Query Frame = 1
Query: 1 QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVASVPSFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTESGKKSGTFKRELVAVFTQ 321
QQV DLK R+P VLL+VE GY+ RFFG+DA AA+VL IYAH++HNF ASVP+FRL VH+RRLV AGYKVGVV+Q E+AA+KA G +SG F R L A++T+
Sbjct: 129 QQVVDLKKRYPDVLLMVEVGYKYRFFGQDAEIAARVLGIYAHMDHNFLTASVPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHG----SNRSGPFGRGLSALYTK 231 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146244.3152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig146244.3152.1 >prot_H-elongata_contig146244.3152.1 ID=prot_H-elongata_contig146244.3152.1|Name=mRNA_H-elongata_contig146244.3152.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp QQVSDLKARHPGVLLLVECGYRLRFFGEDALTAAKVLRIYAHVNHNFHVAback to top mRNA from alignment at H-elongata_contig146244:622..1634- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig146244.3152.1 ID=mRNA_H-elongata_contig146244.3152.1|Name=mRNA_H-elongata_contig146244.3152.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1013bp|location=Sequence derived from alignment at H-elongata_contig146244:622..1634- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig146244:622..1634- >mRNA_H-elongata_contig146244.3152.1 ID=mRNA_H-elongata_contig146244.3152.1|Name=mRNA_H-elongata_contig146244.3152.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig146244:622..1634- (Himanthalia elongata Himel1 dioecious)back to top |