mRNA_H-elongata_contig14601.3141.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14601.3141.1
Unique NamemRNA_H-elongata_contig14601.3141.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14601.3141.1 vs. uniprot
Match: D7FTB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB6_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 2.240e-40
Identity = 75/143 (52.45%), Postives = 99/143 (69.23%), Query Frame = 2 
Query:    2 ELLFALAHMLGWKFDVPQMPTALGMSSIPPATTMFFELHHHSNEVHAIQENPVTAKGREDGNVTHEQEDYYYVRTYTWTPMFGQKEVVLSACSHVEPGKGCPLSTLKSTILNDTINTGSWRDICHHVPFVEAEDMAKKITYRD 430
            +LL+ +AH LGW FDV   PTALG SSIPPATTM FELH+ ++E          A+  +D     E+  YYYVRT+TWTP FGQ+EVVL ACS VE G GC L+T+++ + +   +TGSW++IC+ VPF +AE MA+ IT+ D
Sbjct:  253 QLLYGVAHFLGWHFDVKGAPTALGTSSIPPATTMVFELHYRAHE--QADNGTTGAEQVQDEASAQEEAGYYYVRTFTWTPEFGQREVVLDACSGVEAGTGCRLTTIEAIVSDSVQDTGSWQEICNDVPFDQAEQMAQHITFSD 393
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BLAST of mRNA_H-elongata_contig14601.3141.1 vs. uniprot
Match: A0A2D4BT22_PYTIN (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BT22_PYTIN)

HSP 1 Score: 90.5 bits (223), Expect = 4.200e-16
Identity = 50/128 (39.06%), Postives = 66/128 (51.56%), Query Frame = 2 
Query:    2 ELLFALAHMLGWKFDVPQMPTALGMSSIPPATTMFFELHHHSNEVHAIQENPVTAKGREDGNVTHEQEDYYYVRTYTWTPMFGQKEVVLSACSHVEPGKGCPLSTLKSTILNDTINTGSWRDICHHVP 385
            ELL  L  MLGW       P+ALGM+S+ P TTMFFELH   N                    T E E +Y+VRT+ W+P   ++ V LS CS ++    CPL    + I N    TG+W+DIC++ P
Sbjct: 1047 ELLHGLGKMLGWNLSFAGEPSALGMTSLHPGTTMFFELHAEKN-------------------ATTESE-HYFVRTFVWSPQTAREAVKLSKCSTLD----CPLDEFNAIIKNHIARTGTWQDICNYHP 1150
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BLAST of mRNA_H-elongata_contig14601.3141.1 vs. uniprot
Match: T0QHB5_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QHB5_SAPDV)

HSP 1 Score: 64.7 bits (156), Expect = 7.320e-8
Identity = 39/137 (28.47%), Postives = 64/137 (46.72%), Query Frame = 2 
Query:    2 ELLFALAHMLGWKFDVPQMPTALGMSS--IPPATTMFFELHHHSNEVHAIQENPVTAKGREDGNVTHEQEDYYYVRTYTWTPMFGQKEVVLSACSHVEPGKGCPLSTLKSTILNDTINTGSWRDICHHVPFVEAEDM 406
            ELL  +  +L W+F++P    A G ++  +PPATTM+FELH  +              GR+             VRT+ W+P+ G+  V L  CS ++    CP+   +  +      T SW  +C + P  + ++M
Sbjct:  270 ELLHGMGLLLDWRFEMPGEARAPGFNTTALPPATTMYFELHEEN--------------GRQ------------LVRTFLWSPLTGRAPVQLGKCSALD----CPMDEFRGILDAHVAATSSWETLCAYHPVKKVKNM 376
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14601.3141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTB6_ECTSI2.240e-4052.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2D4BT22_PYTIN4.200e-1639.06Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
T0QHB5_SAPDV7.320e-828.47Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14601contigH-elongata_contig14601:1240..3816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue2.3e-33
Seed eggNOG ortholog2880.D7FTB6
KEGG rclassRC00017
KEGG koko:K19283
KEGG ReactionR11527
EggNOG OGs296Q8@1,2RDPG@2759
EC3.1.3.2,3.1.3.5
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons5
Model size1052
Cds size603
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929868.4694676-UTR-H-elongata_contig14601:1239..16631622929868.4694676-UTR-H-elongata_contig14601:1239..1663Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14601 1240..1663 -
1691679188.552588-UTR-H-elongata_contig14601:1239..16631691679188.552588-UTR-H-elongata_contig14601:1239..1663Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14601 1240..1663 -
1622929868.5713081-UTR-H-elongata_contig14601:3791..38161622929868.5713081-UTR-H-elongata_contig14601:3791..3816Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14601 3792..3816 -
1691679188.6329467-UTR-H-elongata_contig14601:3791..38161691679188.6329467-UTR-H-elongata_contig14601:3791..3816Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14601 3792..3816 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929868.4923759-CDS-H-elongata_contig14601:1663..18131622929868.4923759-CDS-H-elongata_contig14601:1663..1813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 1664..1813 -
1691679188.563717-CDS-H-elongata_contig14601:1663..18131691679188.563717-CDS-H-elongata_contig14601:1663..1813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 1664..1813 -
1622929868.5042958-CDS-H-elongata_contig14601:2362..24431622929868.5042958-CDS-H-elongata_contig14601:2362..2443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 2363..2443 -
1691679188.5802536-CDS-H-elongata_contig14601:2362..24431691679188.5802536-CDS-H-elongata_contig14601:2362..2443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 2363..2443 -
1622929868.515703-CDS-H-elongata_contig14601:2820..29241622929868.515703-CDS-H-elongata_contig14601:2820..2924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 2821..2924 -
1691679188.6002579-CDS-H-elongata_contig14601:2820..29241691679188.6002579-CDS-H-elongata_contig14601:2820..2924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 2821..2924 -
1622929868.5446398-CDS-H-elongata_contig14601:3172..32991622929868.5446398-CDS-H-elongata_contig14601:3172..3299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 3173..3299 -
1691679188.6108434-CDS-H-elongata_contig14601:3172..32991691679188.6108434-CDS-H-elongata_contig14601:3172..3299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 3173..3299 -
1622929868.5579185-CDS-H-elongata_contig14601:3650..37911622929868.5579185-CDS-H-elongata_contig14601:3650..3791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 3651..3791 -
1691679188.6235971-CDS-H-elongata_contig14601:3650..37911691679188.6235971-CDS-H-elongata_contig14601:3650..3791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14601 3651..3791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14601.3141.1prot_H-elongata_contig14601.3141.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14601 1664..3791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14601.3141.1

>prot_H-elongata_contig14601.3141.1 ID=prot_H-elongata_contig14601.3141.1|Name=mRNA_H-elongata_contig14601.3141.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=201bp
MLGWKFDVPQMPTALGMSSIPPATTMFFELHHHSNEVHAIQENPVTAKGR
EDGNVTHEQEDYYYVRTYTWTPMFGQKEVVLSACSHVEPGKGCPLSTLKS
TILNDTINTGSWRDICHHVPFVEAEDMAKKITYRDGEEAGVGQDREVRWS
QPGHLMTMSPLTAVAVVVLLVILVVLRVLMMKENFMPTHDREEEEYEILP
*
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mRNA from alignment at H-elongata_contig14601:1240..3816-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14601.3141.1 ID=mRNA_H-elongata_contig14601.3141.1|Name=mRNA_H-elongata_contig14601.3141.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2577bp|location=Sequence derived from alignment at H-elongata_contig14601:1240..3816- (Himanthalia elongata Himel1 dioecious)
GGAACTGTTGTTCGCCTTAGCTCACATGTTGGGTTGGAAGTTTGACGTGC
CTCAAATGCCGACAGCGCTAGGGATGTCATCTATACCCCCAGCCACCACG
ATGTTCTTCGAGCTGCACCATCATAGCAACGAGGTGCACGCAATACAGGA
AAACCCTGTCACTGCTGTTTTGTATCGAAACCTCCTTATTTCAAAACCAT
TCGGACGTCGGGAGATTATTCTCCCCGTAACGCCCCGCTACCTCCACCTC
TACATAGGCGAGCGCGGACGTTAGGAACGCCCTTTGCTGGAGATTATTCA
GAATGTATAAAATCTTCGCTTCGCTTGATGCGTTCGTAGAATCCTCTAGC
TTTCTGTATTTCCGGCTCGTTCGAAAAAATCAGAAATATTTCTTTAACTT
CGTGAAGACTCAACATCGATCGTCGCCGTCGTTTTCTTGACCACTACCTA
GGCGAAAGAAACTGGACAAGACCTTGACCTTGACACGGCTTCAAGTACGG
GGAATACGACTGCACAGAAAGGGCGTGAAGACGGCAATGTGACTCATGAG
CAAGAGGACTACTACTACGTTAGGACTTACACTTGGACGCCTATGTTTGG
ACAGAAGGAAGTCGTCTTGAGCGCGTGCAGCCATGTCGAACCAGGTAACT
TCGGAGAAGCTGGGGCATACCGGTGTTCCCCGAGGACGGCAGGGGTAACG
TCAATTTTTAATGCCCCGCTCTAAAAGGGCCATAGATTTTTGAGCTCTTT
CGTCGCAGCTTTTCATCCAGCTTTAAAACGCTCTGCCGCGAAATTATTGT
TTTTGTTGGATTTTCTGATCGACTCTGGCCTCATTCGGATACAATCTCTT
TATATTAACAAATGGAGAGAGATACGCATGTCTTGCATGCAGGCAAAGGG
TGCCCCTTGAGTACTCTTAAGAGCACGATTCTGAATGACACGATCAACAC
CGGATCTTGGCGGGACATCTGCCATCACGTGCCATTCGTGGAAGCGGTGA
GGGGTAATGAACAATCTTACCCGTTAGAACCAACCCGCCCATGGTCGCAG
CCACCTTGAAGCTAAAATGTAATAAACTTAATTCCTATAGTGTGGACTCA
TCGTGTTTTTACAACTTTGAATTTTGTTGGCGAAGCGTTGTCGAACGAGC
CACATGGTTCTTTGGCCTCAGAACACGTAAAGTAGGAGCTAATGACAACG
CAAAACCTTAGACGTGTCTAAGCGCGGCGCAGCCGTTAATATTTTCTTCG
AAATGAGTGCTTGTTAACATGTGAACGCACTTCGGAAGGTTTCACCTTTG
TACCTCTAGGGTGTATCCCCGCGAATTACCCGTTTCCGTCAACTTGCCTT
CCCCGTTTCTTTGCCCACTACAGGAGGATATGGCGAAGAAGATCACGTAT
AGGGATGGCGAAGAAGCCGGCGTGGGCCAAGACAGGGAAGTGCGCTGGAG
CCAGGTACGGCAGCATCATAGGCGCGGCGCCCCGCTGACCTACGCGATGG
AAGATCAGGGATGAGGTCGAACGTACTGCGATTGGATAAGAATAGTAGCG
TCATCGAAGGGGTATTGGAATGTGTCTTGGAATGTTTACGTGTGAGAGAA
TCTGTGGCGTTGAGATAACCTAGTGTGCTATTATCGATATATTATGCTGT
ACGAGGTATACTATAAATATTATAGATAAATCACTCCTTATGCCGTATGC
TATTATCGATATATTACTTGTATGCTGTACCAGGTAAAATATTTAATAGT
ATATACAGTATATCACTCCTTATGCCGTATACTAATAATATAGATATCCC
TCCTTAAAGCGATTCAAACATTTAAGCGAGAACATTAAGTTTTTCGTGCT
CGTAAAGTCCCCCCTTAATCCGCTGATGATCTAGATCGGATCCTTTTCAA
CAACCCTGTGGGAACGTTGAAATCCTGCCATGACTGACTTTGCGCTCCTC
CCCCGCTCTGGACCGTGGATGCCATGCCCACTTACTATGTTGACTTGAGC
CAGCCGGGGCACCTGATGACTATGAGTCCGCTGACCGCCGTGGCCGTGGT
GGTGTTGTTGGTGATCTTGGTAGTGCTTCGCGTCCTCATGATGAAGGAAA
ACTTCATGCCTACTCATGATCGCGAGGAAGAGGAATACGAAATCTTGCCC
TGAGCGTGCCTGCAGGAGCGGTCCAAGCGCGGGCCCGGGTCGTGCCCAAG
AGGGTTGATGTGTGGTGTCTTGTGTCTCTCCGTAGGCCTCTAGTCGATGG
CCTTGCGTGTGTTAGTGTCTTGGTACTGCGTGGGCTCTGGTCGAAGTTAA
CGCCTGAGCATATTAAATCGTGGGAATTATGTTCTTCCGGTATTTCTCTC
AGGTGGCGAACGGCAGATAGCACTGTCTGTGTAGTTGACTGACTGCTCCT
TCGAAGTTATGCTTTTATGTTGAAAATGTGAAGTTTTAAATCGGGAGAAG
GTTGAGGGGGTGGATCCAATGCATTTGCTGAGTCGTGCAGAGCATGGCAA
TTAATTATTGAATTCTCTAACCCTACAATATTTGAGTTGTATTGCATTGC
TTACATTAAGAGGCTGCAGTCCCTTAC
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Coding sequence (CDS) from alignment at H-elongata_contig14601:1240..3816-

>mRNA_H-elongata_contig14601.3141.1 ID=mRNA_H-elongata_contig14601.3141.1|Name=mRNA_H-elongata_contig14601.3141.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1206bp|location=Sequence derived from alignment at H-elongata_contig14601:1240..3816- (Himanthalia elongata Himel1 dioecious)
ATGTTGGGTTGGAAGTTTGACGTGCCTCAAATGCCGACAGCGCTAGGGAT
GTCATCTATACCCCCAGCCACCACGATGTTCTTCGAGCTGCACCATCATA
GCAACGAGGTGCACGCAATACAGGAAAACCCTGTCACTGCTATGTTGGGT
TGGAAGTTTGACGTGCCTCAAATGCCGACAGCGCTAGGGATGTCATCTAT
ACCCCCAGCCACCACGATGTTCTTCGAGCTGCACCATCATAGCAACGAGG
TGCACGCAATACAGGAAAACCCTGTCACTGCTAAAGGGCGTGAAGACGGC
AATGTGACTCATGAGCAAGAGGACTACTACTACGTTAGGACTTACACTTG
GACGCCTATGTTTGGACAGAAGGAAGTCGTCTTGAGCGCGTGCAGCCATG
TCGAACCAGAAAGGGCGTGAAGACGGCAATGTGACTCATGAGCAAGAGGA
CTACTACTACGTTAGGACTTACACTTGGACGCCTATGTTTGGACAGAAGG
AAGTCGTCTTGAGCGCGTGCAGCCATGTCGAACCAGGCAAAGGGTGCCCC
TTGAGTACTCTTAAGAGCACGATTCTGAATGACACGATCAACACCGGATC
TTGGCGGGACATCTGCCATCACGTGCCATTCGTGGAAGCGGCAAAGGGTG
CCCCTTGAGTACTCTTAAGAGCACGATTCTGAATGACACGATCAACACCG
GATCTTGGCGGGACATCTGCCATCACGTGCCATTCGTGGAAGCGGAGGAT
ATGGCGAAGAAGATCACGTATAGGGATGGCGAAGAAGCCGGCGTGGGCCA
AGACAGGGAAGTGCGCTGGAGCCAGGAGGATATGGCGAAGAAGATCACGT
ATAGGGATGGCGAAGAAGCCGGCGTGGGCCAAGACAGGGAAGTGCGCTGG
AGCCAGCCGGGGCACCTGATGACTATGAGTCCGCTGACCGCCGTGGCCGT
GGTGGTGTTGTTGGTGATCTTGGTAGTGCTTCGCGTCCTCATGATGAAGG
AAAACTTCATGCCTACTCATGATCGCGAGGAAGAGGAATACGAAATCTTG
CCCTGACCGGGGCACCTGATGACTATGAGTCCGCTGACCGCCGTGGCCGT
GGTGGTGTTGTTGGTGATCTTGGTAGTGCTTCGCGTCCTCATGATGAAGG
AAAACTTCATGCCTACTCATGATCGCGAGGAAGAGGAATACGAAATCTTG
CCCTGA
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