mRNA_H-elongata_contig145279.3098.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145279.3098.1
Unique NamemRNA_H-elongata_contig145279.3098.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: A0A151RGT1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RGT1_CAJCA)

HSP 1 Score: 109 bits (272), Expect = 8.430e-27
Identity = 53/128 (41.41%), Postives = 84/128 (65.62%), Query Frame = 1
Query:   13 WQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYR--DSRKQFGLLKKAMYGLVHAGLLW 390
            W++V++ + K  +G R +F  K   DG IE+YK RLVA+G+ Q  GI Y+E+ +P     ++RVVL++ A  GW+  QLDV  A+L  ++EEE+Y+E+P+ ++  + R +  LLKKA+YGL  +   W
Sbjct:   23 WEIVDKPRDKKAIGCRWIFTVKHKADGTIERYKARLVAKGYTQTYGIDYKETFAPVAKMNTVRVVLALTAHFGWDLHQLDVKSAFLHGNLEEEVYMEIPQGFKVQNERNKVCLLKKALYGLTQSLRAW 150          
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 112 bits (280), Expect = 3.220e-26
Identity = 57/128 (44.53%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    7 GVWQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRKQFGLLKKAMYGLVHAGLLW 390
            GV++ V R + + ++G++ VFK K   DG++EKYK RLVAQGF QV+GI Y E+ +P     SIR++L++ A   WE  Q+DV  A+L  ++EEEIY+++P  ++ S      LKKA+YGL  A   W
Sbjct: 1025 GVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREW 1152          
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 108 bits (270), Expect = 5.930e-25
Identity = 54/127 (42.52%), Postives = 83/127 (65.35%), Query Frame = 1
Query:   13 WQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRK-QFGLLKKAMYGLVHAGLLW 390
            W+VV+    K  +G + ++K K + DG IE+YK RLVAQGF Q++GI Y+E+ SP     S+R  L++  A  WE  Q+DV+ A+L  D+EEE+Y++LPE ++ + K +   L+K++YGL  A   W
Sbjct:  113 WKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 239          
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 108 bits (270), Expect = 7.020e-25
Identity = 54/127 (42.52%), Postives = 83/127 (65.35%), Query Frame = 1
Query:   13 WQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRK-QFGLLKKAMYGLVHAGLLW 390
            W+VV+    K  +G + ++K K + DG IE+YK RLVAQGF Q++GI Y+E  SP     S+R  L+++ A  WE  Q+DV+ A+L  D+EEE+Y++LPE ++ + K +   L+K++YGL  A   W
Sbjct:  582 WKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 708          
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE)

HSP 1 Score: 102 bits (254), Expect = 7.860e-25
Identity = 53/134 (39.55%), Postives = 82/134 (61.19%), Query Frame = 1
Query:   13 WQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAY--------RDSRKQFGLLKKAMYGLVHAGLLW 390
            W +V+R + KTV+G+R VF+ K+  DG +E+ K RLVA+GF Q+ G HY E+ +     +SIR V+++ A    E  QLD   AYL  ++EEEIY+E+P+          +D   +   ++KA+YGL  +G +W
Sbjct:   49 WTLVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALYGLKQSGRMW 182          
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: A0A1S4D038_TOBAC (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4D038_TOBAC)

HSP 1 Score: 106 bits (265), Expect = 8.290e-25
Identity = 54/132 (40.91%), Postives = 87/132 (65.91%), Query Frame = 1
Query:    1 SRGVWQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDS--RKQFGLLKKAMYGLVHAGLLW 390
            S G W +V R+    V+G+R +FK K   DG +E++K RLVA+G+ Q++G++++++ SP    A+IRVVLS+I AL W+ +QL+V  A+L  D++E++++E P  +R+        LLKKA+Y L  A   W
Sbjct:   10 SNGTWVLVPRKSNMNVVGSRWMFKTKFHFDGFVERFKARLVAKGYNQIEGVYFDDTFSPVVKAATIRVVLSIIIALNWDIKQLNVKNAFLHGDLKEKVFMEQPPRFRNPIFPNHVCLLKKAIYALKQAPKYW 141          
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI)

HSP 1 Score: 107 bits (268), Expect = 1.320e-24
Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 1
Query:   13 WQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRK-QFGLLKKAMYGLVHAGLLW 390
            W+VV+    K  +G + ++K K + DG IE+YK RLVAQGF Q++GI Y+E  SP     S+R  L++  A  WE  Q+DV+ A+L  D+EEE+Y++LPE ++ + K +   L+K++YGL  A   W
Sbjct:  836 WKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 962          
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM)

HSP 1 Score: 107 bits (268), Expect = 1.330e-24
Identity = 50/128 (39.06%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    7 GVWQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRKQFGLLKKAMYGLVHAGLLW 390
            G W++ E  + + ++G+R VF +K D+ G++ +YK RLVAQGF Q+ G+ Y ++ SP     ++R  +++ A   WE RQ+D+  AYL  ++EEEI++E PE + D   +   LK  +YGL  AG +W
Sbjct:  885 GTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMW 1012          
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: UPI00192EECC5 (uncharacterized protein LOC120294339 n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192EECC5)

HSP 1 Score: 103 bits (258), Expect = 5.970e-24
Identity = 50/128 (39.06%), Postives = 80/128 (62.50%), Query Frame = 1
Query:    7 GVWQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRKQFGLLKKAMYGLVHAGLLW 390
            G W++V+  + K ++G + VF  K   DG +E+YK RLVA+GF Q  G+ Y+E+ +P     S+R++LS+ AA  W   QLDV  A+L  D+EEE+++ LP  + ++  +   LKK++YGL  +   W
Sbjct:   14 GTWKLVDAPEGKKIVGCKWVFTVKCKLDGSVERYKTRLVAKGFTQTYGVDYQETFAPVAKINSVRILLSLAAAFDWPLHQLDVKNAFLNGDLEEEVFMSLPPGFAETEGKVCRLKKSLYGLKQSPRAW 141          
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY)

HSP 1 Score: 101 bits (251), Expect = 6.240e-24
Identity = 49/128 (38.28%), Postives = 77/128 (60.16%), Query Frame = 1
Query:    7 GVWQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRKQFGLLKKAMYGLVHAGLLW 390
            G W++ +  K +  +G + VF++K +K+G++ KYK RLVAQG+ Q+ G+ + E+ +P     SIR +L++     WE  Q+DV  AYL  D++EEIY+  PE + D       L K +YGL  +G  W
Sbjct:    2 GTWELQDLPKDRNAVGCKWVFQKKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVHLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFNDGSGHVCRLHKTLYGLKQSGHKW 129          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151RGT1_CAJCA8.430e-2741.41Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C2WN23_AMAMK3.220e-2644.53Integrase catalytic domain-containing protein (Fra... [more]
A0A438GNV2_VITVI5.930e-2542.52Retrovirus-related Pol polyprotein from transposon... [more]
A0A438E4T4_VITVI7.020e-2542.52Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A9Y7J8_LYGHE7.860e-2539.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A1S4D038_TOBAC8.290e-2540.91uncharacterized mitochondrial protein AtMg00810-li... [more]
A5BCC7_VITVI1.320e-2442.52Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A0C3AKI0_9AGAM1.330e-2439.06Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
UPI00192EECC55.970e-2439.06uncharacterized protein LOC120294339 n=1 Tax=Eucal... [more]
A0A401GXA0_9APHY6.240e-2438.28Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145279contigH-elongata_contig145279:53..445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score103.6
Seed ortholog evalue7.1e-20
Seed eggNOG ortholog981085.XP_010101443.1
KEGG koko:K16743
EggNOG free text desc.Abnormal spindle-like microcephaly-associated protein homolog
EggNOG OGs37R7M@33090,3GGW1@35493,4JJ08@91835,COG2801@1,KOG0017@2759,KOG0165@1,KOG0165@2759
COG Functional cat.Z
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size393
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.6189497-CDS-H-elongata_contig145279:52..4451622929861.6189497-CDS-H-elongata_contig145279:52..445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145279 53..445 -
1691679186.8780367-CDS-H-elongata_contig145279:52..4451691679186.8780367-CDS-H-elongata_contig145279:52..445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145279 53..445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145279.3098.1prot_H-elongata_contig145279.3098.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145279 53..445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145279.3098.1

>prot_H-elongata_contig145279.3098.1 ID=prot_H-elongata_contig145279.3098.1|Name=mRNA_H-elongata_contig145279.3098.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
SRGVWQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKG
IHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYV
ELPEAYRDSRKQFGLLKKAMYGLVHAGLLW*
back to top

mRNA from alignment at H-elongata_contig145279:53..445-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145279.3098.1 ID=mRNA_H-elongata_contig145279.3098.1|Name=mRNA_H-elongata_contig145279.3098.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig145279:53..445- (Himanthalia elongata Himel1 dioecious)
TCTCGAGGCGTGTGGCAGGTGGTGGAGCGCCAAAAAAGGAAGACGGTGTT GGGCACGAGAGTAGTTTTCAAGCGAAAAATCGACAAGGATGGAAGGATCG AGAAGTATAAATGTCGTCTCGTGGCACAGGGTTTCAGGCAGGTCAAAGGC ATACACTACGAGGAATCCTCCTCTCCGACTCCTACGCAGGCCAGCATTAG GGTGGTACTCAGCATGATCGCGGCTCTCGGTTGGGAGGCGCGGCAGCTGG ACGTCGACATGGCCTACCTGGAGGCCGATGTGGAGGAGGAGATCTACGTT GAGCTCCCGGAGGCATACCGTGACTCCAGGAAGCAATTCGGCCTACTAAA GAAGGCAATGTACGGGCTTGTCCACGCCGGGCTGCTGTGGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig145279:53..445-

>mRNA_H-elongata_contig145279.3098.1 ID=mRNA_H-elongata_contig145279.3098.1|Name=mRNA_H-elongata_contig145279.3098.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig145279:53..445- (Himanthalia elongata Himel1 dioecious)
TCTCGAGGCGTGTGGCAGGTGGTGGAGCGCCAAAAAAGGAAGACGGTGTT
GGGCACGAGAGTAGTTTTCAAGCGAAAAATCGACAAGGATGGAAGGATCG
AGAAGTATAAATGTCGTCTCGTGGCACAGGGTTTCAGGCAGGTCAAAGGC
ATACACTACGAGGAATCCTCCTCTCCGACTCCTACGCAGGCCAGCATTAG
GGTGGTACTCAGCATGATCGCGGCTCTCGGTTGGGAGGCGCGGCAGCTGG
ACGTCGACATGGCCTACCTGGAGGCCGATGTGGAGGAGGAGATCTACGTT
GAGCTCCCGGAGGCATACCGTGACTCCAGGAAGCAATTCGGCCTACTAAA
GAAGGCAATGTACGGGCTTGTCCACGCCGGGCTGCTGTGGTAATCTCGAG
GCGTGTGGCAGGTGGTGGAGCGCCAAAAAAGGAAGACGGTGTTGGGCACG
AGAGTAGTTTTCAAGCGAAAAATCGACAAGGATGGAAGGATCGAGAAGTA
TAAATGTCGTCTCGTGGCACAGGGTTTCAGGCAGGTCAAAGGCATACACT
ACGAGGAATCCTCCTCTCCGACTCCTACGCAGGCCAGCATTAGGGTGGTA
CTCAGCATGATCGCGGCTCTCGGTTGGGAGGCGCGGCAGCTGGACGTCGA
CATGGCCTACCTGGAGGCCGATGTGGAGGAGGAGATCTACGTTGAGCTCC
CGGAGGCATACCGTGACTCCAGGAAGCAATTCGGCCTACTAAAGAAGGCA
ATGTACGGGCTTGTCCACGCCGGGCTGCTGTGGTAA
back to top