mRNA_H-elongata_contig145279.3098.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: A0A151RGT1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RGT1_CAJCA) HSP 1 Score: 109 bits (272), Expect = 8.430e-27 Identity = 53/128 (41.41%), Postives = 84/128 (65.62%), Query Frame = 1
Query: 13 WQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYR--DSRKQFGLLKKAMYGLVHAGLLW 390
W++V++ + K +G R +F K DG IE+YK RLVA+G+ Q GI Y+E+ +P ++RVVL++ A GW+ QLDV A+L ++EEE+Y+E+P+ ++ + R + LLKKA+YGL + W
Sbjct: 23 WEIVDKPRDKKAIGCRWIFTVKHKADGTIERYKARLVAKGYTQTYGIDYKETFAPVAKMNTVRVVLALTAHFGWDLHQLDVKSAFLHGNLEEEVYMEIPQGFKVQNERNKVCLLKKALYGLTQSLRAW 150
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 112 bits (280), Expect = 3.220e-26 Identity = 57/128 (44.53%), Postives = 84/128 (65.62%), Query Frame = 1
Query: 7 GVWQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRKQFGLLKKAMYGLVHAGLLW 390
GV++ V R + + ++G++ VFK K DG++EKYK RLVAQGF QV+GI Y E+ +P SIR++L++ A WE Q+DV A+L ++EEEIY+++P ++ S LKKA+YGL A W
Sbjct: 1025 GVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREW 1152
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI) HSP 1 Score: 108 bits (270), Expect = 5.930e-25 Identity = 54/127 (42.52%), Postives = 83/127 (65.35%), Query Frame = 1
Query: 13 WQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRK-QFGLLKKAMYGLVHAGLLW 390
W+VV+ K +G + ++K K + DG IE+YK RLVAQGF Q++GI Y+E+ SP S+R L++ A WE Q+DV+ A+L D+EEE+Y++LPE ++ + K + L+K++YGL A W
Sbjct: 113 WKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 239
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI) HSP 1 Score: 108 bits (270), Expect = 7.020e-25 Identity = 54/127 (42.52%), Postives = 83/127 (65.35%), Query Frame = 1
Query: 13 WQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRK-QFGLLKKAMYGLVHAGLLW 390
W+VV+ K +G + ++K K + DG IE+YK RLVAQGF Q++GI Y+E SP S+R L+++ A WE Q+DV+ A+L D+EEE+Y++LPE ++ + K + L+K++YGL A W
Sbjct: 582 WKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 708
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE) HSP 1 Score: 102 bits (254), Expect = 7.860e-25 Identity = 53/134 (39.55%), Postives = 82/134 (61.19%), Query Frame = 1
Query: 13 WQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAY--------RDSRKQFGLLKKAMYGLVHAGLLW 390
W +V+R + KTV+G+R VF+ K+ DG +E+ K RLVA+GF Q+ G HY E+ + +SIR V+++ A E QLD AYL ++EEEIY+E+P+ +D + ++KA+YGL +G +W
Sbjct: 49 WTLVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALYGLKQSGRMW 182
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: A0A1S4D038_TOBAC (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4D038_TOBAC) HSP 1 Score: 106 bits (265), Expect = 8.290e-25 Identity = 54/132 (40.91%), Postives = 87/132 (65.91%), Query Frame = 1
Query: 1 SRGVWQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDS--RKQFGLLKKAMYGLVHAGLLW 390
S G W +V R+ V+G+R +FK K DG +E++K RLVA+G+ Q++G++++++ SP A+IRVVLS+I AL W+ +QL+V A+L D++E++++E P +R+ LLKKA+Y L A W
Sbjct: 10 SNGTWVLVPRKSNMNVVGSRWMFKTKFHFDGFVERFKARLVAKGYNQIEGVYFDDTFSPVVKAATIRVVLSIIIALNWDIKQLNVKNAFLHGDLKEKVFMEQPPRFRNPIFPNHVCLLKKAIYALKQAPKYW 141
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI) HSP 1 Score: 107 bits (268), Expect = 1.320e-24 Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 1
Query: 13 WQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRK-QFGLLKKAMYGLVHAGLLW 390
W+VV+ K +G + ++K K + DG IE+YK RLVAQGF Q++GI Y+E SP S+R L++ A WE Q+DV+ A+L D+EEE+Y++LPE ++ + K + L+K++YGL A W
Sbjct: 836 WKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 962
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM) HSP 1 Score: 107 bits (268), Expect = 1.330e-24 Identity = 50/128 (39.06%), Postives = 81/128 (63.28%), Query Frame = 1
Query: 7 GVWQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRKQFGLLKKAMYGLVHAGLLW 390
G W++ E + + ++G+R VF +K D+ G++ +YK RLVAQGF Q+ G+ Y ++ SP ++R +++ A WE RQ+D+ AYL ++EEEI++E PE + D + LK +YGL AG +W
Sbjct: 885 GTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMW 1012
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: UPI00192EECC5 (uncharacterized protein LOC120294339 n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192EECC5) HSP 1 Score: 103 bits (258), Expect = 5.970e-24 Identity = 50/128 (39.06%), Postives = 80/128 (62.50%), Query Frame = 1
Query: 7 GVWQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRKQFGLLKKAMYGLVHAGLLW 390
G W++V+ + K ++G + VF K DG +E+YK RLVA+GF Q G+ Y+E+ +P S+R++LS+ AA W QLDV A+L D+EEE+++ LP + ++ + LKK++YGL + W
Sbjct: 14 GTWKLVDAPEGKKIVGCKWVFTVKCKLDGSVERYKTRLVAKGFTQTYGVDYQETFAPVAKINSVRILLSLAAAFDWPLHQLDVKNAFLNGDLEEEVFMSLPPGFAETEGKVCRLKKSLYGLKQSPRAW 141
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY) HSP 1 Score: 101 bits (251), Expect = 6.240e-24 Identity = 49/128 (38.28%), Postives = 77/128 (60.16%), Query Frame = 1
Query: 7 GVWQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPTQASIRVVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRKQFGLLKKAMYGLVHAGLLW 390
G W++ + K + +G + VF++K +K+G++ KYK RLVAQG+ Q+ G+ + E+ +P SIR +L++ WE Q+DV AYL D++EEIY+ PE + D L K +YGL +G W
Sbjct: 2 GTWELQDLPKDRNAVGCKWVFQKKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVHLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFNDGSGHVCRLHKTLYGLKQSGHKW 129 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145279.3098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig145279.3098.1 >prot_H-elongata_contig145279.3098.1 ID=prot_H-elongata_contig145279.3098.1|Name=mRNA_H-elongata_contig145279.3098.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp SRGVWQVVERQKRKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGback to top mRNA from alignment at H-elongata_contig145279:53..445- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig145279.3098.1 ID=mRNA_H-elongata_contig145279.3098.1|Name=mRNA_H-elongata_contig145279.3098.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig145279:53..445- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig145279:53..445- >mRNA_H-elongata_contig145279.3098.1 ID=mRNA_H-elongata_contig145279.3098.1|Name=mRNA_H-elongata_contig145279.3098.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig145279:53..445- (Himanthalia elongata Himel1 dioecious)back to top |