mRNA_H-elongata_contig145111.3090.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145111.3090.1
Unique NamemRNA_H-elongata_contig145111.3090.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig145111.3090.1 vs. uniprot
Match: D7G9I1_ECTSI (Cyclopropane-fatty-acyl-phospholipid synthase/ oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I1_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 4.430e-16
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1
Query:    1 SDERLMPKRRGAWSAWNYLGRSTEMAAAEAEVASRGRTADVKPVYVTYWLNKV 159
            SDERLMPKRR AWSAWNYLG+STE+AAA    A+RG  AD KP +VTYWLNK+
Sbjct:  401 SDERLMPKRRAAWSAWNYLGKSTEIAAA----AARGHAADTKPAFVTYWLNKL 449          
BLAST of mRNA_H-elongata_contig145111.3090.1 vs. uniprot
Match: A0A6H5K6Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Z7_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.040e-12
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 1
Query:   16 MPKRRGAWSAWNYLGRSTEMAAAEAEVASRGRTADVKPVYVTYWLNK 156
            MPKRR AWSAWNYLG+STE+AAA    A+RG  AD KP +VTYWLNK
Sbjct:    1 MPKRRAAWSAWNYLGKSTEIAAA----AARGHAADTKPAFVTYWLNK 43          
BLAST of mRNA_H-elongata_contig145111.3090.1 vs. uniprot
Match: A0A835ZDJ8_9STRA (Mycolic acid cyclopropane synthetase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDJ8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.510e-9
Identity = 41/95 (43.16%), Postives = 51/95 (53.68%), Query Frame = 1
Query:    1 SDERLMPKRRGAWSAWNYLGRSTEMAAAEAEVASRGRTADVKPVYVTYWLNKVLR------VVLSLLENVDKPGSPQSRQRLAYQTSHNAAFAQG 267
            SD  LMP+RR AWSAWNY+G S       A+ A+RG     KPVYVTYWLNK+        V +SL  N   P  P    R+  +T+H     +G
Sbjct:   85 SDAALMPRRRAAWSAWNYMGDS-------ADAAARGG-GGAKPVYVTYWLNKLQNLDCRDSVFVSL--NPSAPPDPAKTHRVI-ETTHPQFTPEG 168          
BLAST of mRNA_H-elongata_contig145111.3090.1 vs. uniprot
Match: A0A7S3UT52_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UT52_HETAK)

HSP 1 Score: 53.5 bits (127), Expect = 4.870e-7
Identity = 26/53 (49.06%), Postives = 32/53 (60.38%), Query Frame = 1
Query:    1 SDERLMPKRRGAWSAWNYLGRSTEMAAAEAEVASRGRTADVKPVYVTYWLNKV 159
            SD  LMP+R+ AW+AWNYLG             S  R A  +PV+VTYWLNK+
Sbjct:   29 SDPALMPRRKAAWAAWNYLG-------------SSARGAQQQPVFVTYWLNKL 68          
BLAST of mRNA_H-elongata_contig145111.3090.1 vs. uniprot
Match: A0A549T3F0_9HYPH (FAD-dependent oxidoreductase n=2 Tax=Rhizobium TaxID=379 RepID=A0A549T3F0_9HYPH)

HSP 1 Score: 51.6 bits (122), Expect = 1.530e-5
Identity = 24/53 (45.28%), Postives = 31/53 (58.49%), Query Frame = 1
Query:    1 SDERLMPKRRGAWSAWNYLGRSTEMAAAEAEVASRGRTADVKPVYVTYWLNKV 159
            SDERLMPKR+G WS+WNY+G                R  D  P+ VTYW+N++
Sbjct:  302 SDERLMPKRKGVWSSWNYIGGK--------------RVDDEAPLCVTYWMNRL 340          
BLAST of mRNA_H-elongata_contig145111.3090.1 vs. uniprot
Match: A0A164UGB6_9AGAM (FAD/NAD(P)-binding domain-containing protein (Fragment) n=2 Tax=Sistotremastrum TaxID=139133 RepID=A0A164UGB6_9AGAM)

HSP 1 Score: 51.6 bits (122), Expect = 1.550e-5
Identity = 32/95 (33.68%), Postives = 47/95 (49.47%), Query Frame = 1
Query:    1 SDERLMPKRRGAWSAWNYLGRSTEMAAAEAEVASRGRTADVKPVYVTYWLNKVLRVVLS----LLENVDKPGSPQSRQRL-AYQTSHNAAFAQGV 270
            +D RLMPKRR AWS+WNYL + T               A+V  V +TYW+N +  +       +L  ++ P  P +R+ +  YQ  H    A+ V
Sbjct:  310 ADTRLMPKRRLAWSSWNYLTKRTP------------EKANVNQVSLTYWMNNLQHISEKKYGPVLVTLNPPFEPDARKTIDQYQYDHPVVSAESV 392          
BLAST of mRNA_H-elongata_contig145111.3090.1 vs. uniprot
Match: A0A536UVB9_9PROT (FAD-dependent oxidoreductase n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536UVB9_9PROT)

HSP 1 Score: 50.4 bits (119), Expect = 3.890e-5
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1
Query:    1 SDERLMPKRRGAWSAWNYLGRSTEMAAAEAEVASRGRTADVKPVYVTYWLNKV--LRVVLSLLENVDKPGSPQSRQRLA-YQTSH 246
            +D RLMPKRR AW+AWNYL        A A+VA        KPV V+YWLN++  L     L+  ++ P  P+   ++A ++ SH
Sbjct:  294 TDTRLMPKRRRAWAAWNYL--------APADVAVG------KPVAVSYWLNRLQPLPFQTPLMVTLNPPLEPRPETQIAEFEYSH 364          
BLAST of mRNA_H-elongata_contig145111.3090.1 vs. uniprot
Match: B8NZK3_POSPM (Predicted protein n=3 Tax=Postia placenta TaxID=104341 RepID=B8NZK3_POSPM)

HSP 1 Score: 50.1 bits (118), Expect = 5.350e-5
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1
Query:    4 DERLMPKRRGAWSAWNYLGRSTEMAAAEAEVASRGRTADVKPVYVTYWLNKVLRV 168
            D+RLMPKRR AWS WNYL RST   +  A+       A+V  V +TYW+N++  +
Sbjct:  255 DKRLMPKRRVAWSCWNYLTRSTVDKSGNAK-------ANVDQVSLTYWMNELQHI 302          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145111.3090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G9I1_ECTSI4.430e-1673.58Cyclopropane-fatty-acyl-phospholipid synthase/ oxi... [more]
A0A6H5K6Z7_9PHAE1.040e-1272.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZDJ8_9STRA6.510e-943.16Mycolic acid cyclopropane synthetase-domain-contai... [more]
A0A7S3UT52_HETAK4.870e-749.06Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A549T3F0_9HYPH1.530e-545.28FAD-dependent oxidoreductase n=2 Tax=Rhizobium Tax... [more]
A0A164UGB6_9AGAM1.550e-533.68FAD/NAD(P)-binding domain-containing protein (Frag... [more]
A0A536UVB9_9PROT3.890e-540.00FAD-dependent oxidoreductase n=2 Tax=Betaproteobac... [more]
B8NZK3_POSPM5.350e-547.27Predicted protein n=3 Tax=Postia placenta TaxID=10... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145111contigH-elongata_contig145111:897..1172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue6.9e-11
Seed eggNOG ortholog2880.D7G9I1
EggNOG free text desc.lipid biosynthetic process
EggNOG OGs2QSMW@2759,COG2230@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size261
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.047934-CDS-H-elongata_contig145111:896..11571622929861.047934-CDS-H-elongata_contig145111:896..1157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145111 897..1157 -
1691679186.6723852-CDS-H-elongata_contig145111:896..11571691679186.6723852-CDS-H-elongata_contig145111:896..1157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145111 897..1157 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.0679638-UTR-H-elongata_contig145111:1157..11721622929861.0679638-UTR-H-elongata_contig145111:1157..1172Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig145111 1158..1172 -
1691679186.6822355-UTR-H-elongata_contig145111:1157..11721691679186.6822355-UTR-H-elongata_contig145111:1157..1172Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig145111 1158..1172 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145111.3090.1prot_H-elongata_contig145111.3090.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145111 897..1157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145111.3090.1

>prot_H-elongata_contig145111.3090.1 ID=prot_H-elongata_contig145111.3090.1|Name=mRNA_H-elongata_contig145111.3090.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MPKRRGAWSAWNYLGRSTEMAAAEAEVASRGRTADVKPVYVTYWLNKVLR
VVLSLLENVDKPGSPQSRQRLAYQTSHNAAFAQGVP*
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mRNA from alignment at H-elongata_contig145111:897..1172-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145111.3090.1 ID=mRNA_H-elongata_contig145111.3090.1|Name=mRNA_H-elongata_contig145111.3090.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at H-elongata_contig145111:897..1172- (Himanthalia elongata Himel1 dioecious)
AGCGACGAGCGGCTGATGCCCAAGAGGCGAGGGGCGTGGTCGGCGTGGAA CTACCTTGGTCGATCTACGGAGATGGCGGCGGCGGAGGCGGAGGTGGCGT CGAGAGGACGCACCGCCGATGTCAAGCCGGTGTATGTGACCTACTGGCTC AACAAGGTGCTTCGGGTGGTCCTTTCTCTTCTCGAGAATGTAGACAAACC TGGCTCCCCACAGAGTCGACAGCGACTTGCTTACCAGACTAGTCACAACG CCGCCTTTGCACAGGGCGTCCCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig145111:897..1172-

>mRNA_H-elongata_contig145111.3090.1 ID=mRNA_H-elongata_contig145111.3090.1|Name=mRNA_H-elongata_contig145111.3090.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig145111:897..1172- (Himanthalia elongata Himel1 dioecious)
ATGCCCAAGAGGCGAGGGGCGTGGTCGGCGTGGAACTACCTTGGTCGATC
TACGGAGATGGCGGCGGCGGAGGCGGAGGTGGCGTCGAGAGGACGCACCG
CCGATGTCAAGCCGGTGTATGTGACCTACTGGCTCAACAAGGTGCTTCGG
GTGGTCCTTTCTCTTCTCGAGAATGTAGACAAACCTGGCTCCCCACAGAG
TCGACAGCGACTTGCTTACCAGACTAGTCACAACGCCGCCTTTGCACAGG
GCGTCCCATAAATGCCCAAGAGGCGAGGGGCGTGGTCGGCGTGGAACTAC
CTTGGTCGATCTACGGAGATGGCGGCGGCGGAGGCGGAGGTGGCGTCGAG
AGGACGCACCGCCGATGTCAAGCCGGTGTATGTGACCTACTGGCTCAACA
AGGTGCTTCGGGTGGTCCTTTCTCTTCTCGAGAATGTAGACAAACCTGGC
TCCCCACAGAGTCGACAGCGACTTGCTTACCAGACTAGTCACAACGCCGC
CTTTGCACAGGGCGTCCCATAA
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