mRNA_H-elongata_contig144612.3061.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144612.3061.1
Unique NamemRNA_H-elongata_contig144612.3061.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: D7G6K3_ECTSI (2-cys peroxiredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K3_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 3.950e-41
Identity = 67/84 (79.76%), Postives = 77/84 (91.67%), Query Frame = 1
Query:    1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATESEDDPLKAGDKMVVINTPKEFKDVTKKNMVVVDSVAPHCGKCRQIMPFVNDLS 252
            +VCPAGWKPG K+MKPGLDASMEYFSSGATESE+DPL+AGDKMVVIN+P +FKDVT + + VVD VAPHCGKCRQ+MPFV +LS
Sbjct:  238 EVCPAGWKPGDKTMKPGLDASMEYFSSGATESEEDPLEAGDKMVVINSPNDFKDVTSEALAVVDFVAPHCGKCRQMMPFVKELS 321          
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: A0A835YLA5_9STRA (2-cys peroxiredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 6.650e-25
Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = 1
Query:    1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATESEDDPLKAGDKMVVINTPKEFKDVTKKNMVVVDSVAPHCGKCRQIMPFVNDLS 252
            +VCPAGW PG K+MK   + S+EYFS+   E E D L A DK+ VI TP+++K+V K+   VVD VAP+CGKCRQIMP+VN+LS
Sbjct:  237 EVCPAGWTPGGKTMKADAEGSLEYFST--VEGEGDVLAASDKVKVIKTPQDYKNVIKEGKAVVDFVAPYCGKCRQIMPYVNELS 318          
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: A0A7S3UWW5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWW5_HETAK)

HSP 1 Score: 104 bits (259), Expect = 8.730e-25
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATESED--DPLKAGDKMVVINTPKEFKDVTKKNMVVVDSVAPHCGKCRQIMPFVNDLS 252
            +VCPA WKPG K+M P  + S+ YF +GATE  D  DPL AG  +VV+ +P+++ DV K+  VVVD VAP CGKCRQIMPFVN L+
Sbjct:  229 EVCPANWKPGEKTMIPDPEGSLAYFETGATEDPDAEDPLAAGKGVVVLRSPQDYYDVIKEERVVVDFVAPWCGKCRQIMPFVNKLA 314          
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: A0A4D9CSY7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSY7_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.120e-22
Identity = 50/86 (58.14%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATE-SEDDPLKAGDKMVVINTPKEFKDVT-KKNMVVVDSVAPHCGKCRQIMPFVNDLS 252
            +VCPAGW PG K+MK   + S+EYF+SGATE SE DPL+ G  +V     K  K++  KK  VV+D VA  CGKC+QIMPFVNDLS
Sbjct:  216 EVCPAGWTPGDKTMKADPEGSLEYFASGATEESEQDPLEGGPHIVTAKDGKHLKELLGKKGKVVLDFVAGWCGKCKQIMPFVNDLS 301          
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: A0A662XZG8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZG8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.450e-13
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATESEDDPLKAGDKMVVINTPKEFKDVTKKNM-VVVDSVAPHCGKCRQIMPFVNDLS 252
            +VCPA W+PG K++K     S EYFSS   ++EDD   A   + ++ +  EF  + K    VV D +AP CGKC QI+PFV DL+
Sbjct:  133 EVCPANWQPGEKTIKATPTDSYEYFSSIKEDAEDDDAAA---LTLVKSRAEFDALVKSGKPVVADFMAPWCGKCAQILPFVEDLA 214          
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: A0A662XF34_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XF34_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.560e-13
Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATESEDDPLKAGDKMVVINTPKEFKDVTKKNM-VVVDSVAPHCGKCRQIMPFVNDLS 252
            +VCPA W+PG K++K     S EYFSS   + EDD   A   + ++ T  EF  + K    VV D +AP CGKC QI+PFV DL+
Sbjct:  250 EVCPANWQPGEKTIKATPTDSYEYFSSIKEDVEDDDAAA---LTLVKTRAEFDALVKSGKPVVADFMAPWCGKCAQILPFVEDLA 331          
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: F0WS23_9STRA (Thioredoxindependent peroxide reductase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WS23_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.730e-12
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATESEDDPLKAGDKMVVINTPKEFKDVTKKNM-VVVDSVAPHCGKCRQIMPFVNDLS 252
            +VCPA WKPG+KS+      S EYFS G  + EDD    G  M +I + ++F+D+ KK+  VV   +AP CGKC +I P+V +L+
Sbjct:  246 EVCPANWKPGSKSIVATPKGSHEYFS-GVDDDEDDDSDKG--MTLIKSKQQFQDLIKKHENVVAKFMAPWCGKCAKIQPYVQELT 327          
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: H3HC76_PHYRM (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=H3HC76_PHYRM)

HSP 1 Score: 70.1 bits (170), Expect = 3.080e-12
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATESEDDPLKAGDKMVVINTPKEFKDVTKKNM-VVVDSVAPHCGKCRQIMPFVNDLS 252
            +VCPA W+PG K++K     S EYFS+   ++EDD   A   + ++ +  +F  + K    VV D +AP CGKC QI+PFV DL+
Sbjct:  226 EVCPANWQPGDKTIKATPTDSYEYFSTVKEDAEDDDAVA---LTLVKSKAQFDALVKSGKPVVADFMAPWCGKCAQILPFVEDLA 307          
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: A0A7S0QX20_9CHLO (Thioredoxin-dependent peroxiredoxin n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QX20_9CHLO)

HSP 1 Score: 70.1 bits (170), Expect = 3.220e-12
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATESEDDPLKAGDKMVVINTPKEFKD-VTKKNMVVVDSVAPHCGKCRQIMPFVNDL 249
            +VCPA WKPG K+M    DASM+YFS   T +E+D   AG K+  + +  E+   V     VVVD +AP CGKCRQI PFV+ L
Sbjct:  242 EVCPANWKPGEKTMVADPDASMDYFS---TLNEEDDF-AG-KLTPLKSKSEYDALVATGKPVVVDFMAPWCGKCRQIAPFVDTL 320          
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: G4YP23_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YP23_PHYSP)

HSP 1 Score: 69.3 bits (168), Expect = 5.950e-12
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATESEDDPLKAGDKMVVINTPKEFKDVTKKNM-VVVDSVAPHCGKCRQIMPFVNDLS 252
            +VCPA W+PG K++K     S EYFS+   E++DD + A   + ++    +F  + K    +V D +AP CGKC QI+PFV DL+
Sbjct:  235 EVCPANWQPGDKTIKATPKDSYEYFSTVKEEADDDDVVA---LTLVKNKAQFDALVKSGKPMVADFMAPWCGKCSQILPFVEDLA 316          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G6K3_ECTSI3.950e-4179.762-cys peroxiredoxin n=1 Tax=Ectocarpus siliculosus... [more]
A0A835YLA5_9STRA6.650e-2558.332-cys peroxiredoxin n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S3UWW5_HETAK8.730e-2558.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CSY7_9STRA4.120e-2258.14Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A662XZG8_9STRA2.450e-1344.71Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A662XF34_9STRA3.560e-1345.88Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
F0WS23_9STRA1.730e-1244.71Thioredoxindependent peroxide reductase putative n... [more]
H3HC76_PHYRM3.080e-1242.35Uncharacterized protein n=13 Tax=Phytophthora TaxI... [more]
A0A7S0QX20_9CHLO3.220e-1250.00Thioredoxin-dependent peroxiredoxin n=1 Tax=Pyrami... [more]
G4YP23_PHYSP5.950e-1241.18Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144612contigH-elongata_contig144612:430..1655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue4.3e-34
Seed eggNOG ortholog2880.D7G6K3
KEGG rclassRC01003,RC01872
KEGG koko:K03386,ko:K03671,ko:K11186,ko:K13279,ko:K20011
KEGG ReactionR08360,R08362
KEGG Pathwayko00480,ko01100,ko04146,ko04214,ko04621,ko05418,map00480,map01100,map04146,map04214,map04621,map05418
GOsGO:0003674,GO:0003824,GO:0004791,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006109,GO:0006950,GO:0006979,GO:0008047,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009636,GO:0009642,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019222,GO:0019725,GO:0019904,GO:0030234,GO:0031976,GO:0031984,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043085,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044092,GO:0044093,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0080090,GO:0097237,GO:0098754,GO:0098772,GO:0098869,GO:1990748
EggNOG free text desc.peroxiredoxin activity
EggNOG OGsCOG0450@1,COG0526@1,KOG0852@2759,KOG0907@2759
EC1.11.1.15
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog description2-cys peroxiredoxin
Ec32 orthologEc-05_006500.1
Exons3
Model size252
Cds size252
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144612.3061.1prot_H-elongata_contig144612.3061.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144612 430..1655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929857.7807658-CDS-H-elongata_contig144612:429..5431622929857.7807658-CDS-H-elongata_contig144612:429..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144612 430..543 +
1691679185.6048322-CDS-H-elongata_contig144612:429..5431691679185.6048322-CDS-H-elongata_contig144612:429..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144612 430..543 +
1622929857.7925158-CDS-H-elongata_contig144612:1058..11371622929857.7925158-CDS-H-elongata_contig144612:1058..1137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144612 1059..1137 +
1691679185.614224-CDS-H-elongata_contig144612:1058..11371691679185.614224-CDS-H-elongata_contig144612:1058..1137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144612 1059..1137 +
1622929857.806385-CDS-H-elongata_contig144612:1596..16551622929857.806385-CDS-H-elongata_contig144612:1596..1655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144612 1597..1655 +
1691679185.6218565-CDS-H-elongata_contig144612:1596..16551691679185.6218565-CDS-H-elongata_contig144612:1596..1655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144612 1597..1655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144612.3061.1

>prot_H-elongata_contig144612.3061.1 ID=prot_H-elongata_contig144612.3061.1|Name=mRNA_H-elongata_contig144612.3061.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
QVCPAGWKPGAKSMKPGLDASMEYFSSGATESEDDPLKAGDKMVVINTPK
EFKDVTKKNMVVVDSVAPHCGKCRQIMPFVNDLS
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mRNA from alignment at H-elongata_contig144612:430..1655+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144612.3061.1 ID=mRNA_H-elongata_contig144612.3061.1|Name=mRNA_H-elongata_contig144612.3061.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1226bp|location=Sequence derived from alignment at H-elongata_contig144612:430..1655+ (Himanthalia elongata Himel1 dioecious)
CAGGTGTGCCCCGCCGGGTGGAAGCCCGGGGCGAAGTCGATGAAGCCCGG CCTGGACGCGTCGATGGAGTATTTTTCGTCGGGCGCCACGGAGAGCGAGG ATGATCCTCTTAAGGTGAGGATAAGGCAACTCTCTCTGTCCCTTGCTTCC TCGCCTGACATGCTGACATGCTTTTTTTTTTGCCGTCCGTAGTTATGAAG ACAAAGATGAAAAATGATTTAGAGAGCCACGTAGGTACAGACGGAGGGGA TGTGATGAGAGGTGGGAGGGGGTCCGTCCGACCCGATCCGTCCGCCTCTT TTGCCCATTCGACCCTTCTTTTGTAAGCTTACCATCCACTCTCGTGAGCA GCGTACTGGTACTGCATTGAATTAAGCGGGGCTATGGAAGGGTACTGCAT TGAATGAAGCGGGGCAATGGGAGGGTACTGAATTGAATTAAGCGGGGCAA TGGGAGGGTACTGCATTGAATTAAGCGGGGCAATGGGAGGGTACCGCATT GAATTAAGTGGGGCAATGGGAGGGTATTGTATTCATATGCGTCTTGTATA TGTATGTATATTTGCATGTGCGCATGTGTCGCTGTGACACCACGATCTCT TTCACGCTGCTTCTGTCGTGACGAAGCAGGCCGGCGACAAGATGGTGGTG ATCAACACTCCCAAGGAGTTCAAGGACGTGACGAAGAAGAACATGGTTGT CGTAGACTGTGAGTGCCAGTCTGTCATTGTTTTCGGATGAACGGCTCGCG AGTGCCACTCTGTCCTTAAAAATATACCAGTAGTCTGATGCCTTGTATTG GTATTAGTGTTTAGGGCTACACTAATACTAAATATTATATATTAGAGAGC GATGTCTCTATTATCTCTTCATAAGCTCAATTTAACTGCAGCACGGTAGA AATCACATTTCCTTCTTTTGTATTGTATTGAAGCGTTTCGATTGGGAATG CCGGAGTGATAAGGTTGTCGACCGTCGAAAACGAGAAGTAGTTCCAAATT GTCAGCAAAAAATGTCGCAACTCCCCCCCCCGAGGTGCAAAACTTTGACA GTCCAGAGGACACGACCACACACCGAGAAGCTTCCACCAATATCGGCGAT CGGACTGAATCGGTATGATTCTTGACACAACCCTGCTCCTGCTTCCGCCT CCTTCTCCCCGATCCAGCCGTTGCTCCCCACTGCGGCAAGTGCCGCCAAA TTATGCCGTTCGTGAACGATCTCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig144612:430..1655+

>mRNA_H-elongata_contig144612.3061.1 ID=mRNA_H-elongata_contig144612.3061.1|Name=mRNA_H-elongata_contig144612.3061.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig144612:430..1655+ (Himanthalia elongata Himel1 dioecious)
CAGGTGTGCCCCGCCGGGTGGAAGCCCGGGGCGAAGTCGATGAAGCCCGG
CCTGGACGCGTCGATGGAGTATTTTTCGTCGGGCGCCACGGAGAGCGAGG
ATGATCCTCTTAAGCAGGTGTGCCCCGCCGGGTGGAAGCCCGGGGCGAAG
TCGATGAAGCCCGGCCTGGACGCGTCGATGGAGTATTTTTCGTCGGGCGC
CACGGAGAGCGAGGATGATCCTCTTAAGGCCGGCGACAAGATGGTGGTGA
TCAACACTCCCAAGGAGTTCAAGGACGTGACGAAGAAGAACATGGTTGTC
GTAGACTGCCGGCGACAAGATGGTGGTGATCAACACTCCCAAGGAGTTCA
AGGACGTGACGAAGAAGAACATGGTTGTCGTAGACTCCGTTGCTCCCCAC
TGCGGCAAGTGCCGCCAAATTATGCCGTTCGTGAACGATCTCAGCCCGTT
GCTCCCCACTGCGGCAAGTGCCGCCAAATTATGCCGTTCGTGAACGATCT
CAGC
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