mRNA_H-elongata_contig144612.3061.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: D7G6K3_ECTSI (2-cys peroxiredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K3_ECTSI) HSP 1 Score: 147 bits (371), Expect = 3.950e-41 Identity = 67/84 (79.76%), Postives = 77/84 (91.67%), Query Frame = 1
Query: 1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATESEDDPLKAGDKMVVINTPKEFKDVTKKNMVVVDSVAPHCGKCRQIMPFVNDLS 252
+VCPAGWKPG K+MKPGLDASMEYFSSGATESE+DPL+AGDKMVVIN+P +FKDVT + + VVD VAPHCGKCRQ+MPFV +LS
Sbjct: 238 EVCPAGWKPGDKTMKPGLDASMEYFSSGATESEEDPLEAGDKMVVINSPNDFKDVTSEALAVVDFVAPHCGKCRQMMPFVKELS 321
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: A0A835YLA5_9STRA (2-cys peroxiredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA5_9STRA) HSP 1 Score: 104 bits (260), Expect = 6.650e-25 Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = 1
Query: 1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATESEDDPLKAGDKMVVINTPKEFKDVTKKNMVVVDSVAPHCGKCRQIMPFVNDLS 252
+VCPAGW PG K+MK + S+EYFS+ E E D L A DK+ VI TP+++K+V K+ VVD VAP+CGKCRQIMP+VN+LS
Sbjct: 237 EVCPAGWTPGGKTMKADAEGSLEYFST--VEGEGDVLAASDKVKVIKTPQDYKNVIKEGKAVVDFVAPYCGKCRQIMPYVNELS 318
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: A0A7S3UWW5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWW5_HETAK) HSP 1 Score: 104 bits (259), Expect = 8.730e-25 Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 1
Query: 1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATESED--DPLKAGDKMVVINTPKEFKDVTKKNMVVVDSVAPHCGKCRQIMPFVNDLS 252
+VCPA WKPG K+M P + S+ YF +GATE D DPL AG +VV+ +P+++ DV K+ VVVD VAP CGKCRQIMPFVN L+
Sbjct: 229 EVCPANWKPGEKTMIPDPEGSLAYFETGATEDPDAEDPLAAGKGVVVLRSPQDYYDVIKEERVVVDFVAPWCGKCRQIMPFVNKLA 314
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: A0A4D9CSY7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSY7_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 4.120e-22 Identity = 50/86 (58.14%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATE-SEDDPLKAGDKMVVINTPKEFKDVT-KKNMVVVDSVAPHCGKCRQIMPFVNDLS 252
+VCPAGW PG K+MK + S+EYF+SGATE SE DPL+ G +V K K++ KK VV+D VA CGKC+QIMPFVNDLS
Sbjct: 216 EVCPAGWTPGDKTMKADPEGSLEYFASGATEESEQDPLEGGPHIVTAKDGKHLKELLGKKGKVVLDFVAGWCGKCKQIMPFVNDLS 301
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: A0A662XZG8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZG8_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 2.450e-13 Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query: 1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATESEDDPLKAGDKMVVINTPKEFKDVTKKNM-VVVDSVAPHCGKCRQIMPFVNDLS 252
+VCPA W+PG K++K S EYFSS ++EDD A + ++ + EF + K VV D +AP CGKC QI+PFV DL+
Sbjct: 133 EVCPANWQPGEKTIKATPTDSYEYFSSIKEDAEDDDAAA---LTLVKSRAEFDALVKSGKPVVADFMAPWCGKCAQILPFVEDLA 214
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: A0A662XF34_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XF34_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 3.560e-13 Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 1
Query: 1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATESEDDPLKAGDKMVVINTPKEFKDVTKKNM-VVVDSVAPHCGKCRQIMPFVNDLS 252
+VCPA W+PG K++K S EYFSS + EDD A + ++ T EF + K VV D +AP CGKC QI+PFV DL+
Sbjct: 250 EVCPANWQPGEKTIKATPTDSYEYFSSIKEDVEDDDAAA---LTLVKTRAEFDALVKSGKPVVADFMAPWCGKCAQILPFVEDLA 331
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: F0WS23_9STRA (Thioredoxindependent peroxide reductase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WS23_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 1.730e-12 Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1
Query: 1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATESEDDPLKAGDKMVVINTPKEFKDVTKKNM-VVVDSVAPHCGKCRQIMPFVNDLS 252
+VCPA WKPG+KS+ S EYFS G + EDD G M +I + ++F+D+ KK+ VV +AP CGKC +I P+V +L+
Sbjct: 246 EVCPANWKPGSKSIVATPKGSHEYFS-GVDDDEDDDSDKG--MTLIKSKQQFQDLIKKHENVVAKFMAPWCGKCAKIQPYVQELT 327
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: H3HC76_PHYRM (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=H3HC76_PHYRM) HSP 1 Score: 70.1 bits (170), Expect = 3.080e-12 Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 1
Query: 1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATESEDDPLKAGDKMVVINTPKEFKDVTKKNM-VVVDSVAPHCGKCRQIMPFVNDLS 252
+VCPA W+PG K++K S EYFS+ ++EDD A + ++ + +F + K VV D +AP CGKC QI+PFV DL+
Sbjct: 226 EVCPANWQPGDKTIKATPTDSYEYFSTVKEDAEDDDAVA---LTLVKSKAQFDALVKSGKPVVADFMAPWCGKCAQILPFVEDLA 307
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: A0A7S0QX20_9CHLO (Thioredoxin-dependent peroxiredoxin n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QX20_9CHLO) HSP 1 Score: 70.1 bits (170), Expect = 3.220e-12 Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATESEDDPLKAGDKMVVINTPKEFKD-VTKKNMVVVDSVAPHCGKCRQIMPFVNDL 249
+VCPA WKPG K+M DASM+YFS T +E+D AG K+ + + E+ V VVVD +AP CGKCRQI PFV+ L
Sbjct: 242 EVCPANWKPGEKTMVADPDASMDYFS---TLNEEDDF-AG-KLTPLKSKSEYDALVATGKPVVVDFMAPWCGKCRQIAPFVDTL 320
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Match: G4YP23_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YP23_PHYSP) HSP 1 Score: 69.3 bits (168), Expect = 5.950e-12 Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 1
Query: 1 QVCPAGWKPGAKSMKPGLDASMEYFSSGATESEDDPLKAGDKMVVINTPKEFKDVTKKNM-VVVDSVAPHCGKCRQIMPFVNDLS 252
+VCPA W+PG K++K S EYFS+ E++DD + A + ++ +F + K +V D +AP CGKC QI+PFV DL+
Sbjct: 235 EVCPANWQPGDKTIKATPKDSYEYFSTVKEEADDDDVVA---LTLVKNKAQFDALVKSGKPMVADFMAPWCGKCSQILPFVEDLA 316 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144612.3061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig144612.3061.1 >prot_H-elongata_contig144612.3061.1 ID=prot_H-elongata_contig144612.3061.1|Name=mRNA_H-elongata_contig144612.3061.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp QVCPAGWKPGAKSMKPGLDASMEYFSSGATESEDDPLKAGDKMVVINTPKback to top mRNA from alignment at H-elongata_contig144612:430..1655+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig144612.3061.1 ID=mRNA_H-elongata_contig144612.3061.1|Name=mRNA_H-elongata_contig144612.3061.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1226bp|location=Sequence derived from alignment at H-elongata_contig144612:430..1655+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig144612:430..1655+ >mRNA_H-elongata_contig144612.3061.1 ID=mRNA_H-elongata_contig144612.3061.1|Name=mRNA_H-elongata_contig144612.3061.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig144612:430..1655+ (Himanthalia elongata Himel1 dioecious)back to top |