mRNA_H-elongata_contig143643.3005.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143643.3005.1
Unique NamemRNA_H-elongata_contig143643.3005.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig143643.3005.1 vs. uniprot
Match: A0A0U1XAH8_SARHM (Cytochrome c oxidase subunit 1 n=118 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U1XAH8_SARHM)

HSP 1 Score: 461 bits (1186), Expect = 1.850e-158
Identity = 223/245 (91.02%), Postives = 235/245 (95.92%), Query Frame = 1 
Query:    1 FSRKPVFGYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTXXXXIKIFSWIATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMFGAFYFWVGKMTGLAYPEILGQIHFWLMFLGVNLTFFPMHFLGLAGMPRRIPDYPDSYGGWNSIASFGSILSSVASLFFFYIVYLTLTQGSIEESNPWVKDRGLAFPALSGKTR 735
            FSRKPVFGYLGMVYAMLSIG+LGF+VWAHHMFTVGLD+DTRAYFTAATMIIAVPT    IKIFSWIATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMFGAFYFWVGKMTGL YPE+LGQIHFWLMF+GVNLTFFPMHFLGLAGMPRRIPDYPDSY GWNS+ASFGSILSSVASLFFFYIVYLTLT+G +EESNPWVK+RG+AFP +  K+R
Sbjct:  287 FSRKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTG---IKIFSWIATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMFGAFYFWVGKMTGLGYPEVLGQIHFWLMFIGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNSVASFGSILSSVASLFFFYIVYLTLTEGHLEESNPWVKNRGIAFPTIESKSR 528
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BLAST of mRNA_H-elongata_contig143643.3005.1 vs. uniprot
Match: A0A0U4ZTN0_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U4ZTN0_9PHAE)

HSP 1 Score: 449 bits (1156), Expect = 2.290e-155
Identity = 216/241 (89.63%), Postives = 231/241 (95.85%), Query Frame = 1 
Query:    1 FSRKPVFGYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTXXXXIKIFSWIATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMFGAFYFWVGKMTGLAYPEILGQIHFWLMFLGVNLTFFPMHFLGLAGMPRRIPDYPDSYGGWNSIASFGSILSSVASLFFFYIVYLTLTQGSIEESNPWVKDRGLAFPALS 723
            F+RKPVFGYLGMVYAMLSIG+LGF+VWAHHMFTVGLD+DTRAYFTAATMIIAVPT    IKIFSWIAT+WGGSIRLKTPMLF+IGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMF AFYFW+GKMTGL YPEILGQIHFWLMFLGVNLTFFPMHFLGLAGMPRRIPDYPDSY GWN +ASFGSILSS+ASLFFF++VYLTLTQGS+E+SNPWV  RGLAFP+L+
Sbjct:  184 FARKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTG---IKIFSWIATLWGGSIRLKTPMLFAIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMFAAFYFWIGKMTGLTYPEILGQIHFWLMFLGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNGVASFGSILSSIASLFFFFVVYLTLTQGSVEKSNPWVSGRGLAFPSLA 421
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BLAST of mRNA_H-elongata_contig143643.3005.1 vs. uniprot
Match: E6ZES6_ECTSI (Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES6_ECTSI)

HSP 1 Score: 449 bits (1156), Expect = 6.960e-154
Identity = 215/241 (89.21%), Postives = 232/241 (96.27%), Query Frame = 1 
Query:    1 FSRKPVFGYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTXXXXIKIFSWIATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMFGAFYFWVGKMTGLAYPEILGQIHFWLMFLGVNLTFFPMHFLGLAGMPRRIPDYPDSYGGWNSIASFGSILSSVASLFFFYIVYLTLTQGSIEESNPWVKDRGLAFPALS 723
            F+RKPVFGYLGMVYAMLSIG+LGF+VWAHHMFTVGLD+DTRAYFTAATMIIAVPT    IKIFSWIAT+WGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSG+DIALHDTYYVVAHFHYVLSMGAAFTMF AFYFW+GKMTGL YPE+LGQIHFWLMF+GVNLTFFPMHFLGLAGMPRRIPDYPDSY GWN IASFGSILSS+ASLFFF++VY+TLT+GS+EE+NPWVK RGLAFPAL+
Sbjct:  288 FARKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTG---IKIFSWIATLWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGIDIALHDTYYVVAHFHYVLSMGAAFTMFAAFYFWIGKMTGLTYPEVLGQIHFWLMFIGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNGIASFGSILSSLASLFFFFVVYVTLTKGSVEEANPWVKGRGLAFPALT 525
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BLAST of mRNA_H-elongata_contig143643.3005.1 vs. uniprot
Match: A0A8E8PDM6_9PHAE (Cytochrome c oxidase subunit 1 n=2 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PDM6_9PHAE)

HSP 1 Score: 443 bits (1139), Expect = 2.380e-151
Identity = 211/240 (87.92%), Postives = 230/240 (95.83%), Query Frame = 1 
Query:    1 FSRKPVFGYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTXXXXIKIFSWIATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMFGAFYFWVGKMTGLAYPEILGQIHFWLMFLGVNLTFFPMHFLGLAGMPRRIPDYPDSYGGWNSIASFGSILSSVASLFFFYIVYLTLTQGSIEESNPWVKDRGLAFPAL 720
            FSRKPVFG+LGM+YAMLSIGVLGF+VWAHHMFTVGLD+DTRAYFTAATMIIAVPT    IKIFSWIAT+WGGSIRLKTPMLFSIGFLFLFT+GGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMF  FY+W+GKM+GL+YPE+LGQIHFWLMF+GVNLTFFPMHFLGLAGMPRRIPDYPD+Y GWNSIASFGSILSS+ASLFFF++VY+TLTQGS+EESNPWVK RGLAF  +
Sbjct:  280 FSRKPVFGFLGMIYAMLSIGVLGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTG---IKIFSWIATLWGGSIRLKTPMLFSIGFLFLFTVGGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMFAGFYYWIGKMSGLSYPEVLGQIHFWLMFVGVNLTFFPMHFLGLAGMPRRIPDYPDAYAGWNSIASFGSILSSIASLFFFFVVYITLTQGSVEESNPWVKGRGLAFSPI 516
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BLAST of mRNA_H-elongata_contig143643.3005.1 vs. uniprot
Match: A0A5K7TLP3_9PHAE (Cytochrome c oxidase subunit 1 n=55 Tax=Phaeophyceae TaxID=2870 RepID=A0A5K7TLP3_9PHAE)

HSP 1 Score: 441 bits (1133), Expect = 9.570e-150
Identity = 211/245 (86.12%), Postives = 232/245 (94.69%), Query Frame = 1 
Query:    1 FSRKPVFGYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTXXXXIKIFSWIATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMFGAFYFWVGKMTGLAYPEILGQIHFWLMFLGVNLTFFPMHFLGLAGMPRRIPDYPDSYGGWNSIASFGSILSSVASLFFFYIVYLTLTQGSIEESNPWVKDRGLAFPALSGKTR 735
            FSRK VFGYLGMVYAM+SIG+LGF+VWAHHMFTVGLD+DTRAYFT ATMIIAVPT    IKIFSWIAT+WGGSIR+KTPMLFSIGFLFLFTIGGLTGVVLANSG+DIALHDTYYVVAHFHYVLSMGAAFTMF AFYFW+GK+TGLAYPEILGQIHFWLMF+GVNLTFFPMHFLGLAGMPRRIPDYPDS+GGWN++ASFGSILSS+AS+FFFY+VY+TLT+GS+EESNPWVK RGLAF   + K +
Sbjct:  292 FSRKSVFGYLGMVYAMISIGILGFIVWAHHMFTVGLDIDTRAYFTGATMIIAVPTG---IKIFSWIATLWGGSIRVKTPMLFSIGFLFLFTIGGLTGVVLANSGLDIALHDTYYVVAHFHYVLSMGAAFTMFAAFYFWIGKITGLAYPEILGQIHFWLMFIGVNLTFFPMHFLGLAGMPRRIPDYPDSFGGWNAVASFGSILSSLASIFFFYVVYVTLTRGSVEESNPWVKGRGLAFMIPTSKLK 533
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BLAST of mRNA_H-elongata_contig143643.3005.1 vs. uniprot
Match: A0A0S2I710_SACJA (Cytochrome c oxidase subunit 1 n=14 Tax=Saccharina japonica TaxID=88149 RepID=A0A0S2I710_SACJA)

HSP 1 Score: 438 bits (1127), Expect = 1.900e-149
Identity = 212/233 (90.99%), Postives = 224/233 (96.14%), Query Frame = 1 
Query:   22 GYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTXXXXIKIFSWIATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMFGAFYFWVGKMTGLAYPEILGQIHFWLMFLGVNLTFFPMHFLGLAGMPRRIPDYPDSYGGWNSIASFGSILSSVASLFFFYIVYLTLTQGSIEESNPWVKDRGLAFPAL 720
            GYLGMVYAMLSIG+LGF+VWAHHMFTVGLD+DTRAYFTAATMIIAVPT    IKIFSWIAT+WGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMF AFYFW+GKMTGLAYPEILGQIHFWLMFLGVNLTFFPMHFLGLAGMPRRIPDYPDSY GWN +ASFGSILSS+ASLFFF++VY+TLT+GS+EESNPWVK RGLAFP L
Sbjct:  294 GYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTG---IKIFSWIATLWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMFAAFYFWIGKMTGLAYPEILGQIHFWLMFLGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNGLASFGSILSSIASLFFFFVVYITLTRGSVEESNPWVKGRGLAFPVL 523
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BLAST of mRNA_H-elongata_contig143643.3005.1 vs. uniprot
Match: A0A8F0K0Q8_9PHAE (Cytochrome c oxidase subunit 1 n=5 Tax=Laminariales TaxID=2886 RepID=A0A8F0K0Q8_9PHAE)

HSP 1 Score: 436 bits (1120), Expect = 2.400e-148
Identity = 208/246 (84.55%), Postives = 233/246 (94.72%), Query Frame = 1 
Query:    1 FSRKPVFGYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTXXXXIKIFSWIATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMFGAFYFWVGKMTGLAYPEILGQIHFWLMFLGVNLTFFPMHFLGLAGMPRRIPDYPDSYGGWNSIASFGSILSSVASLFFFYIVYLTLTQGSIEESNPWVKDRGLAFPALSGKTRE 738
            F+RKPVFGYLGMVYAMLSIG+LGF+VWAHHMFTVGLD+DTRAYFTAATMIIAVPT    IKIFSW+AT+WGGSIR+KTPMLFSIGFLFLFTIGGLTGVVLANSG+DI+LHDTYYVVAHFHYVLSMGAAFTMF AFY+WVGKMTGLAYPE+LGQIHFWLMFLGVN+TFFPMHFLGLAGMPRR+PDYPDS+ GWN++ASFGSILSSVASLFFF++VY+TLTQGS+ +SN WV+ RGLAFP L  ++ +
Sbjct:  287 FARKPVFGYLGMVYAMLSIGMLGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTG---IKIFSWVATLWGGSIRIKTPMLFSIGFLFLFTIGGLTGVVLANSGLDISLHDTYYVVAHFHYVLSMGAAFTMFAAFYYWVGKMTGLAYPEVLGQIHFWLMFLGVNITFFPMHFLGLAGMPRRVPDYPDSFFGWNALASFGSILSSVASLFFFFVVYITLTQGSVVKSNYWVEGRGLAFPPLPRRSSQ 529
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BLAST of mRNA_H-elongata_contig143643.3005.1 vs. uniprot
Match: A0A1L6KY02_9PHAE (Cytochrome c oxidase subunit 1 n=1 Tax=Sargassum fluitans TaxID=143163 RepID=A0A1L6KY02_9PHAE)

HSP 1 Score: 427 bits (1097), Expect = 5.650e-145
Identity = 206/245 (84.08%), Postives = 220/245 (89.80%), Query Frame = 1 
Query:    1 FSRKPVFGYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTXXXXIKIFSWIATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMFGAFYFWVGKMTGLAYPEILGQIHFWLMFLGVNLTFFPMHFLGLAGMPRRIPDYPDSYGGWNSIASFGSILSSVASLFFFYIVYLTLTQGSIEESNPWVKDRGLAFPALSGKTR 735
            FSRKPVFGYLGMVYAMLSIG+LGF+VWAHHMFTVGLD+DTRAYFTAATMIIAVPT    IKIFSWIATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMFGAFYFW+GKMTGL YPE+LGQIHFWLMF+GVNLTFFPMHFLGLAGMPRRIPDYPDSY GWNS+AS              Y+VYLTLTQG +E+SNPWV++RG+AFP +  K R
Sbjct:  287 FSRKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTG---IKIFSWIATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMFGAFYFWIGKMTGLGYPEVLGQIHFWLMFIGVNLTFFPMHFLGLAGMPRRIPDYPDSYAGWNSVASXXXXXXXXXXXXXXYVVYLTLTQGHLEDSNPWVENRGVAFPVIQSKKR 528
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BLAST of mRNA_H-elongata_contig143643.3005.1 vs. uniprot
Match: Q2TUB0_DICDH (Cytochrome c oxidase subunit 1 n=32 Tax=Phaeophyceae TaxID=2870 RepID=Q2TUB0_DICDH)

HSP 1 Score: 407 bits (1047), Expect = 1.140e-137
Identity = 194/221 (87.78%), Postives = 214/221 (96.83%), Query Frame = 1 
Query:    1 FSRKPVFGYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTXXXXIKIFSWIATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMFGAFYFWVGKMTGLAYPEILGQIHFWLMFLGVNLTFFPMHFLGLAGMPRRIPDYPDSYGGWNSIASFGSILSSVASLFFFYIVYLTLTQG 663
            FS KPVFGYLGMVYAMLSIG+LGF+VWAHHMFTVGLD+DTRAYFTAATMIIAVPT    IKIFSWIATMWGGS++L+TP+LFSIGFLFLFT+GGLTGVVLANSG+DIALHDTYYVVAHFHYVLSMGAAFTMF AFYFW+GK+TGL+YPEILG+IHFWLMFLGVNLTFFPMHFLGLAGMPRRIPDYPD+Y GWN++ASFGSILS++ASLFFFYIVY+TLT+G
Sbjct:  286 FSGKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTG---IKIFSWIATMWGGSVKLETPVLFSIGFLFLFTVGGLTGVVLANSGIDIALHDTYYVVAHFHYVLSMGAAFTMFAAFYFWIGKITGLSYPEILGRIHFWLMFLGVNLTFFPMHFLGLAGMPRRIPDYPDAYSGWNAVASFGSILSALASLFFFYIVYITLTEG 503
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BLAST of mRNA_H-elongata_contig143643.3005.1 vs. uniprot
Match: A0A7S6UA19_9STRA (Cytochrome c oxidase subunit 1 n=5 Tax=Stramenopiles TaxID=33634 RepID=A0A7S6UA19_9STRA)

HSP 1 Score: 400 bits (1029), Expect = 5.500e-135
Identity = 188/221 (85.07%), Postives = 210/221 (95.02%), Query Frame = 1 
Query:    1 FSRKPVFGYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTXXXXIKIFSWIATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHFHYVLSMGAAFTMFGAFYFWVGKMTGLAYPEILGQIHFWLMFLGVNLTFFPMHFLGLAGMPRRIPDYPDSYGGWNSIASFGSILSSVASLFFFYIVYLTLTQG 663
            FS+KPVFGYLGMVYAMLSIGVLGF+VWAHHMFTVG+D+DTRAYFTAATMIIAVPT    IKIFSWIAT+WGGSI LKTPMLF+IGFLFLFT+GGLTGV+LANSG+DIALHDTYYVVAHFHYVLSMGAAF MF  FYFW GK+TGL YPE+LGQIHFWLMF+GVNLTFFPMHFLGLAGMPRRIPDYPD+Y GWN++AS+GSILS+VASLFFFY++Y++LT+G
Sbjct:  272 FSKKPVFGYLGMVYAMLSIGVLGFIVWAHHMFTVGMDIDTRAYFTAATMIIAVPTG---IKIFSWIATLWGGSIELKTPMLFAIGFLFLFTVGGLTGVILANSGIDIALHDTYYVVAHFHYVLSMGAAFAMFAGFYFWFGKITGLEYPEVLGQIHFWLMFIGVNLTFFPMHFLGLAGMPRRIPDYPDAYAGWNAVASYGSILSAVASLFFFYVIYVSLTEG 489
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143643.3005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U1XAH8_SARHM1.850e-15891.02Cytochrome c oxidase subunit 1 n=118 Tax=Phaeophyc... [more]
A0A0U4ZTN0_9PHAE2.290e-15589.63Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=... [more]
E6ZES6_ECTSI6.960e-15489.21Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyc... [more]
A0A8E8PDM6_9PHAE2.380e-15187.92Cytochrome c oxidase subunit 1 n=2 Tax=Phaeophycea... [more]
A0A5K7TLP3_9PHAE9.570e-15086.12Cytochrome c oxidase subunit 1 n=55 Tax=Phaeophyce... [more]
A0A0S2I710_SACJA1.900e-14990.99Cytochrome c oxidase subunit 1 n=14 Tax=Saccharina... [more]
A0A8F0K0Q8_9PHAE2.400e-14884.55Cytochrome c oxidase subunit 1 n=5 Tax=Laminariale... [more]
A0A1L6KY02_9PHAE5.650e-14584.08Cytochrome c oxidase subunit 1 n=1 Tax=Sargassum f... [more]
Q2TUB0_DICDH1.140e-13787.78Cytochrome c oxidase subunit 1 n=32 Tax=Phaeophyce... [more]
A0A7S6UA19_9STRA5.500e-13585.07Cytochrome c oxidase subunit 1 n=5 Tax=Stramenopil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143643contigH-elongata_contig143643:2..898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score354.8
Seed ortholog evalue3.2e-95
Seed eggNOG ortholog70448.Q0P3F1
Preferred namecox1
KEGG koko:K02256
KEGG TC3.D.4.11,3.D.4.7,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005751,GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0016310,GO:0017144,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0034220,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045277,GO:0045333,GO:0046034,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0055114,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902600
EggNOG free text desc.Cytochrome C and Quinol oxidase polypeptide I
EggNOG OGs34JUG@3041,37QZZ@33090,COG0843@1,KOG4769@2759
EC1.9.3.1
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Exons1
Model size897
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143643.3005.1prot_H-elongata_contig143643.3005.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143643 35..748 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929852.0737545-UTR-H-elongata_contig143643:1..341622929852.0737545-UTR-H-elongata_contig143643:1..34Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig143643 2..34 +
1691679183.4137785-UTR-H-elongata_contig143643:1..341691679183.4137785-UTR-H-elongata_contig143643:1..34Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig143643 2..34 +
1622929852.1067264-UTR-H-elongata_contig143643:748..8981622929852.1067264-UTR-H-elongata_contig143643:748..898Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig143643 749..898 +
1691679183.4332619-UTR-H-elongata_contig143643:748..8981691679183.4332619-UTR-H-elongata_contig143643:748..898Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig143643 749..898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929852.0910275-CDS-H-elongata_contig143643:34..7481622929852.0910275-CDS-H-elongata_contig143643:34..748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143643 35..748 +
1691679183.424883-CDS-H-elongata_contig143643:34..7481691679183.424883-CDS-H-elongata_contig143643:34..748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143643 35..748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143643.3005.1

>prot_H-elongata_contig143643.3005.1 ID=prot_H-elongata_contig143643.3005.1|Name=mRNA_H-elongata_contig143643.3005.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=238bp
MVYAMLSIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTXXXXIK
IFSWIATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHD
TYYVVAHFHYVLSMGAAFTMFGAFYFWVGKMTGLAYPEILGQIHFWLMFL
GVNLTFFPMHFLGLAGMPRRIPDYPDSYGGWNSIASFGSILSSVASLFFF
YIVYLTLTQGSIEESNPWVKDRGLAFPALSGKTREDF*
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mRNA from alignment at H-elongata_contig143643:2..898+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143643.3005.1 ID=mRNA_H-elongata_contig143643.3005.1|Name=mRNA_H-elongata_contig143643.3005.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=897bp|location=Sequence derived from alignment at H-elongata_contig143643:2..898+ (Himanthalia elongata Himel1 dioecious)
TTTTCACGTAAGCCTGTTTTTGGTTATTTAGGTATGGTTTATGCTATGCT
TTCTATTGGTGTTCTTGGATTTCTTGTTTGGGCTCACCATATGTTTACAG
TAGGTTTGGACGTGGATACCCGTGCTTATTTTACTGCAGCTACTATGATC
ATTGCCGTTCCTACANNNNNNNNNNGTATTAAGATTTTTAGTTGGATTGC
TACTATGTGGGGAGGTTCTATTCGACTTAAAACCCCAATGTTGTTTTCGA
TAGGTTTTCTTTTTTTATTTACTATTGGTGGTTTAACGGGTGTTGTTTTA
GCTAATTCTGGTGTCGATATCGCCCTTCATGATACTTATTATGTTGTTGC
TCATTTTCATTATGTTTTAAGTATGGGGGCAGCTTTTACTATGTTTGGGG
CTTTTTATTTTTGGGTGGGTAAAATGACAGGTTTAGCTTATCCTGAAATT
TTAGGGCAAATTCATTTTTGGCTTATGTTTTTAGGAGTAAATCTAACGTT
TTTTCCAATGCACTTTTTAGGTTTGGCCGGTATGCCGCGTCGTATTCCTG
ATTATCCTGACTCTTATGGGGGGTGGAATAGTATTGCTTCTTTTGGGTCA
ATTTTATCTTCAGTGGCATCATTATTCTTCTTTTATATTGTATATTTAAC
TCTTACACAAGGATCTATTGAAGAGTCAAATCCTTGGGTTAAAGATAGAG
GTTTAGCTTTTCCTGCGTTATCAGGTAAAACTAGGGAAGATTTTTAAAAT
GGTAATAACATTTTATTTAAATTTTTGGTATACACTAGTGTGGGTTAAAG
TAGTTTATACTTTAGTATAAATTCAGGGCTTGTAACTCAGTGGTAGAGTA
TACGCCTGATAAGCGTAAAGGCGATCGTTCAATCCGATCCAGGCCCA
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Coding sequence (CDS) from alignment at H-elongata_contig143643:2..898+

>mRNA_H-elongata_contig143643.3005.1 ID=mRNA_H-elongata_contig143643.3005.1|Name=mRNA_H-elongata_contig143643.3005.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1428bp|location=Sequence derived from alignment at H-elongata_contig143643:2..898+ (Himanthalia elongata Himel1 dioecious)
ATGGTTTATGCTATGCTTTCTATTGGTGTTCTTGGATTTCTTGTTTGGGC
TCACCATATGTTTACAGTAGGTTTGGACGTGGATACCCGTGCTTATTTTA
CTGCAGCTACTATGATCATTGCCGTTCCTACANNNNNNNNNNGTATTAAG
ATTTTTAGTTGGATTGCTACTATGTGGGGAGGTTCTATTCGACTTAAAAC
CCCAATGTTGTTTTCGATAGGTTTTCTTTTTTTATTTACTATTGGTGGTT
TAACGGGTGTTGTTTTAGCTAATTCTGGTGTCGATATCGCCCTTCATGAT
ACTTATTATGTTGTTGCTCATTTTCATTATGTTTTAAGTATGGGGGCAGC
TTTTACTATGTTTGGGGCTTTTTATTTTTGGGTGGGTAAAATGACAGGTT
TAGCTTATCCTGAAATTTTAGGGCAAATTCATTTTTGGCTTATGTTTTTA
GGAGTAAATCTAACGTTTTTTCCAATGCACTTTTTAGGTTTGGCCGGTAT
GCCGCGTCGTATTCCTGATTATCCTGACTCTTATGGGGGGTGGAATAGTA
TTGCTTCTTTTGGGTCAATTTTATCTTCAGTGGCATCATTATTCTTCTTT
TATATTGTATATTTAACTCTTACACAAGGATCTATTGAAGAGTCAAATCC
TTGGGTTAAAGATAGAGGTTTAGCTTTTCCTGCGTTATCAGGTAAAACTA
GGGAAGATTTTTAAATGGTTTATGCTATGCTTTCTATTGGTGTTCTTGGA
TTTCTTGTTTGGGCTCACCATATGTTTACAGTAGGTTTGGACGTGGATAC
CCGTGCTTATTTTACTGCAGCTACTATGATCATTGCCGTTCCTACANNNN
NNNNNNGTATTAAGATTTTTAGTTGGATTGCTACTATGTGGGGAGGTTCT
ATTCGACTTAAAACCCCAATGTTGTTTTCGATAGGTTTTCTTTTTTTATT
TACTATTGGTGGTTTAACGGGTGTTGTTTTAGCTAATTCTGGTGTCGATA
TCGCCCTTCATGATACTTATTATGTTGTTGCTCATTTTCATTATGTTTTA
AGTATGGGGGCAGCTTTTACTATGTTTGGGGCTTTTTATTTTTGGGTGGG
TAAAATGACAGGTTTAGCTTATCCTGAAATTTTAGGGCAAATTCATTTTT
GGCTTATGTTTTTAGGAGTAAATCTAACGTTTTTTCCAATGCACTTTTTA
GGTTTGGCCGGTATGCCGCGTCGTATTCCTGATTATCCTGACTCTTATGG
GGGGTGGAATAGTATTGCTTCTTTTGGGTCAATTTTATCTTCAGTGGCAT
CATTATTCTTCTTTTATATTGTATATTTAACTCTTACACAAGGATCTATT
GAAGAGTCAAATCCTTGGGTTAAAGATAGAGGTTTAGCTTTTCCTGCGTT
ATCAGGTAAAACTAGGGAAGATTTTTAA
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