mRNA_H-elongata_contig14341.2990.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14341.2990.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI) HSP 1 Score: 379 bits (974), Expect = 1.870e-124 Identity = 175/302 (57.95%), Postives = 219/302 (72.52%), Query Frame = 1
Query: 1 KSRLSKFEYFADDPDSTRDSEEVLLETAERPTYMHNGGWLGFKPSAYGDTADYHDLYWSVGDAGPQKDTNDHAQRTDILFGSIVRISVPSDGTGYEVPSDNYPGAELSEICAIGFRNPWRCGFDSLTDELYCGNVGHNYIESIYNIECGNNYGWVRFEGSRCTEYSEDDYGSCEDVDRSSYTFPIFEYCHYDYFSTSSSQDEYTGGVDICGDRNITGNTVIGGYVYRGQAYADLIYGAYVFAEYEGRNIFYILEQDDGAWTSGTIISDGSVRVYSFSEDIDGELFIIDDNNDIYYVPCGDLC 906
++RLSKF+YFA DP T SEEVLL +A + +H+ GW+GF+PSAYG A YHD+YW+ GD Q D +H Q T L GS++RISVP+DGTGYE+P+ N L EICA GFRNPWRC FD TDELYCG+VGH +E I +ECGNNYGW RFEGSRC E E G C D DRS++TFPI+EYCH DY S + + ++ GVDICG R ++G VIGGYVYRG +AD++YGAYVF + NI+YI+ QD+G W+ GTIISD SV V F+ED +GEL +ID + +IY +PCGD+C
Sbjct: 201 RNRLSKFQYFAGDPAFTLASEEVLLTSAPKIGSIHSAGWVGFQPSAYGTIASYHDIYWTTGDGASQTDPENHGQDTTNLLGSVMRISVPADGTGYEIPTGNLASPALPEICASGFRNPWRCSFDRETDELYCGDVGHTLVEEIDIVECGNNYGWSRFEGSRCQEAQESRDGPCLDTDRSAFTFPIYEYCHPDYSSDDADEADFVAGVDICGTRMVSGTAVIGGYVYRGTYFADVLYGAYVFGDNTSNNIYYIV-QDNGVWSVGTIISDSSVSVIGFAEDNNGELMVIDQDYNIYQLPCGDMC 501
BLAST of mRNA_H-elongata_contig14341.2990.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI) HSP 1 Score: 370 bits (950), Expect = 1.070e-120 Identity = 170/304 (55.92%), Postives = 225/304 (74.01%), Query Frame = 1
Query: 1 KSRLSKFEYFADDPDSTRDSEEVLLETAERPTYMHNGGWLGFKPSAYGDTADYHDLYWSVGDAGPQKDTNDHAQRTDILFGSIVRISVPSDGTGYEVPSDNYPGAELSEICAIGFRNPWRCGFDSLTDELYCGNVGHNYIESIYNIECGNNYGWVRFEGSRCTEYSEDDY--GSCEDVDRSSYTFPIFEYCHYDYFSTSSSQDEYTGGVDICGDRNITGNTVIGGYVYRGQAYADLIYGAYVFAEYEGRNIFYILEQDDGAWTSGTIISDGSVRVYSFSEDIDGELFIIDDNNDIYYVPCGDLC 906
++RL++F Y DP+ T+ SEEVLL T + +H+ GWLGFKPS YG+++ DLYW+ GD GPQ D +H+Q T + G+++RI+VPSDG GY +PS NY G L EICAIGFRNPWRC FD D LYCG+VGH ++E I +ECGNNYGW RFEGSRC E ED+ +C+ + RS +TFP++EYCH DY ST DE+T G DICGDR + GN VIGGYVYRG ++DL+ GAY+F + +NI+Y++E+D G W+ GTIISD SV++ SFSEDI+GE+ ++D ++IY++PCGDLC
Sbjct: 265 RNRLARFTYIPGDPEGTKASEEVLLTTVPKYNSIHSAGWLGFKPSVYGNSSP-QDLYWTTGDGGPQTDPENHSQDTQTMLGAMMRITVPSDGDGYTIPSGNYGGGALDEICAIGFRNPWRCSFDRENDNLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRCQEAVEDNEFNPACDGISRSGFTFPLYEYCHPDYQSTGD--DEFTAGNDICGDRVLLGNAVIGGYVYRGNYFSDLLNGAYIFGDSTMKNIYYLVEED-GGWSLGTIISDASVQIISFSEDINGEIVLLDLQHNIYHMPCGDLC 564
BLAST of mRNA_H-elongata_contig14341.2990.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE) HSP 1 Score: 350 bits (898), Expect = 1.980e-115 Identity = 164/282 (58.16%), Postives = 212/282 (75.18%), Query Frame = 1
Query: 1 KSRLSKFEYFADDPDSTRDSEEVLLETAERPTYMHNGGWLGFKPSAYGDTADYHDLYWSVGDAGPQKDTNDHAQRTDILFGSIVRISVPSDGTGYEVPSDNYPGAELSEICAIGFRNPWRCGFDSLTDELYCGNVGHNYIESIYNIECGNNYGWVRFEGSRCTEYSED-DYGS-CEDVDRSSYTFPIFEYCHYDYFSTSSSQDEYTGGVDICGDRNITGNTVIGGYVYRGQAYADLIYGAYVFAEYEGRNIFYILEQDDGAWTSGTIISDGSVRVYSFSEDI 840
++RL++F Y DP T+ SEEVLL +A + T +H+ GWLGFKPS YG+ A DLYW+ GD GPQ D N+HAQ T + G+++RI+VPSDG+GY +PS NY G L EICAIGFRNPWRC FD TD+LYCG+VGH ++E I +ECGNNYGW RFEGSRC E E+ +Y C+ VDRS +TFP++EYCH DY +S DE+T GVDICGDR + GN VIGGYVYRG ++DL+YG Y+F + +NIFY++++ DG W+ GTIISD SV++ SF+ED+
Sbjct: 202 RNRLARFTYIPGDPAGTKASEEVLLTSAPKSTSIHSAGWLGFKPSVYGN-ASPQDLYWTTGDGGPQTDYNNHAQDTQSMLGAMMRITVPSDGSGYTIPSGNYGGGALDEICAIGFRNPWRCSFDRETDDLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRCQEAVENNEYNPPCDGVDRSGFTFPLYEYCHPDY--SSVGDDEFTAGVDICGDRVLLGNAVIGGYVYRGNFFSDLLYGHYIFGDSTMKNIFYLVKEGDG-WSLGTIISDASVQIISFAEDV 479
BLAST of mRNA_H-elongata_contig14341.2990.1 vs. uniprot
Match: A0A6H5KT40_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT40_9PHAE) HSP 1 Score: 340 bits (871), Expect = 1.130e-111 Identity = 160/304 (52.63%), Postives = 214/304 (70.39%), Query Frame = 1
Query: 1 KSRLSKFEYFADDPDSTRDSEEVLLETAERPTYMHNGGWLGFKPSAYGDTADYHDLYWSVGDAGPQKDTNDHAQRTDILFGSIVRISVPSDGTGYEVPSDNYPGAELSEICAIGFRNPWRCGFDSLTDELYCGNVGHNYIESIYNIECGNNYGWVRFEGSRCTEYSEDDYGS--CEDVDRSSYTFPIFEYCHYDYFSTSSSQDEYTGGVDICGDRNITGNTVIGGYVYRGQAYADLIYGAYVFAEYEGRNIFYILEQDDGAWTSGTIISDGSVRVYSFSEDIDGELFIIDDNNDIYYVPCGDLC 906
++RL++F Y DP +TR +EEVLL T + +H+ GWLGFKPS YG T D +H+Q + G+++RISVPSDGTGY +P NYPGA+ +E+CAIG RNPWRCGFD L D LYCG+VGH +E I IECGNNYGW RFEGSRC E +D+ + C+ VDRS +T+P+FEYCH DY ST + + E+TGG D CGDR + GN VIGGYVYRG ++DL+ GAY+F + RNI+++ E++ G W GTIISD SV++ SF+ED++GE+ ++D + +Y++PCGDLC
Sbjct: 159 RNRLARFTYVPGDPVATRATEEVLLTTVPKYNSIHSAGWLGFKPSDYGST-----------------DPGNHSQDETTMLGAMMRISVPSDGTGYTIPPGNYPGAK-AEVCAIGLRNPWRCGFDRLNDNLYCGDVGHTLVEEINLIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSGFTYPLFEYCHPDYDSTDADEQEFTGGADTCGDRFVVGNCVIGGYVYRGNFFSDLLDGAYIFGDSTMRNIYFLREEEAG-WAVGTIISDASVQIVSFAEDVNGEIMMLDYQHRMYHMPCGDLC 443
BLAST of mRNA_H-elongata_contig14341.2990.1 vs. uniprot
Match: D7FJP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP1_ECTSI) HSP 1 Score: 304 bits (778), Expect = 2.210e-92 Identity = 155/307 (50.49%), Postives = 207/307 (67.43%), Query Frame = 1
Query: 7 RLSKFEYFADDPDSTRDSEEVLLETAERPTYMHNGGWLGFKPSAYGDTAD-YHDLYWSVGDAGPQKDTNDHAQRTDILFGSIVRISVPSD--GTGYEVPSDN-YPGA--ELSEICAIGFRNPWRCGFDSLTDELYCGNVGHNYIESIYNIECGNNYGWVRFEGSRCTEYSED-DYGSCEDVDRSSYTFPIFEYCHYDYFSTSSSQDEYTGGVDICGDRNITGNTVIGGYVYRGQAYADLIYGAYVFAEYEGRNIFYILEQDDGAWTSGTIISDGSVRVYSFSEDIDGELFIIDDNNDIYYVPCGDLC 906
RLSKF Y+A D +T SEE+LL + E+ + +H+ GW+GF PS+Y D YHD+YW+VGD GPQ D ++ AQ L GSIVRISVPS GTGYE+P+ N + GA E EICA G RNP RC FD+ TDELYCG+VG + +E + IECG +YGW FEGSRC + E D G C +DR+ Y FP+FEYCH DY SSQ+E+ D CGDR +TG +VIGG+VYRG Y D++ G Y+FA++ ++ ++ G WT+GT++S ++ F+E DGEL+++ +IY +PCGDLC
Sbjct: 270 RLSKFVYYAGDVVATSGSEEILLTSTEKGSSVHSSGWVGFAPSSYADPEGAYHDIYWTVGDGGPQNDPDNKAQDMTNLHGSIVRISVPSTAMGTGYEIPAGNPFDGANGEKPEICAWGLRNPHRCAFDTATDELYCGDVGQDRVEEVNVIECGKDYGWRMFEGSRCNDGFEGYDGGECSGLDRADYAFPVFEYCHVDY---DSSQEEF----DACGDRTVTGLSVIGGHVYRGAKYDDILGGHYIFADHSVGSLHHLAPAAGGGWTAGTVLS-SIPKIGGFAEGNDGELYMVGYQGNIYDLPCGDLC 568
BLAST of mRNA_H-elongata_contig14341.2990.1 vs. uniprot
Match: D7G960_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G960_ECTSI) HSP 1 Score: 277 bits (709), Expect = 3.930e-86 Identity = 140/304 (46.05%), Postives = 183/304 (60.20%), Query Frame = 1
Query: 1 KSRLSKFEYFADDPDSTRDSEEVLLETAERPTYMHNGGWLGFKPSAYGDTADYHDLYWSVGDAGPQKDTNDHAQRTDILFGSIVRISVPSDGTGYEVPSDNYPGAELSEICAIGFRNPWRCGFDSLTDELYCGNVGHNYIESIYNIECGNNYGWVRFEGSRCTEYSEDDYGS--CEDVDRSSYTFPIFEYCHYDYFSTSSSQDEYTGGVDICGDRNITGNTVIGGYVYRGQAYADLIYGAYVFAEYEGRNIFYILEQDDGAWTSGTIISDGSVRVYSFSEDIDGELFIIDDNNDIYYVPCGDLC 906
++RL++F Y D +TR SEEVLL T + +H+ GWLGFKPSAYG Y DLYW+ GD GPQ D +H+Q DGTGY +P NY GA+ +EICAIG RNPWRC FD L D+LYCG+VG +E I IECGNNYGW RFEGSRC E +D+ + C+ + RS +TFP+FEYCH D+ ST + + ++TGG D CG+R +E+DDG W GTIISD S+++ SF+ED DGE+ ++D N++IY +PCG+LC
Sbjct: 120 RNRLARFTYVPGDAAATRASEEVLLTTVPKYNSVHSAGWLGFKPSAYGSPG-YQDLYWTTGDGGPQTDPFNHSQ----------------DGTGYTIPPGNYHGAK-AEICAIGLRNPWRCSFDRLNDDLYCGDVGQISVEEINFIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGISRSGFTFPLFEYCHPDFDSTDADEQKFTGGADTCGNR--------------------------------------FVEKDDGGWAVGTIISDASIQIISFAEDADGEIMLLDYNHNIYPMPCGNLC 367
BLAST of mRNA_H-elongata_contig14341.2990.1 vs. uniprot
Match: A0A6H5KS07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS07_9PHAE) HSP 1 Score: 270 bits (689), Expect = 8.610e-80 Identity = 135/305 (44.26%), Postives = 186/305 (60.98%), Query Frame = 1
Query: 7 RLSKFEYFADDPDSTRDSEEVLLETAERPTYMHNGGWLGFKPSAYGDTA----DYHDLYWSVGDAGPQKDTNDHAQRTDILFGSIVRISVPSDGTGYEVPSDNYPGAELSEICAIGFRNPWRCGFDSLTDELYCGNVGHNYIESIYNIECGNNYGWVRFEGSRCTEYSEDDYG-SCEDVDRSSYTFPIFEYCHYDYFSTSSSQDEYTGGVDICGDRNITGNTVIGGYVYRGQAYADLIYGAYVFAEYEGRNIFYILEQDDGAWTSGTIISDGSVRVYSFSEDIDGELFIIDDNNDIYYVPCGDLC 906
RLS+F+Y D +T SEE+L+ ++E+ + +H+ GW+GFKPS+YG+ A H+L+W++GD+GPQ DT+D Q +IL GSI+RI V S E+ G RNP+RC FD L D+LYCG+VGH +ESI IECGNNYGW +FEG RC + ED + +CE +DRS +TFP F YCH D++ ICGDR++ G VI GYVYRG Y DL+ G +FA++ ++++ G W SGTI D V +ED DGEL+++ I+ +PCGDLC
Sbjct: 167 RLSRFKYDPDSAANTLASEEILITSSEKKSNVHSAGWIGFKPSSYGNDAVSAGAVHELFWAMGDSGPQLDTSDRGQDPNILHGSIIRIEVSS---------------EMGSGDKEGMRNPYRCSFDRLNDDLYCGDVGHLDVESIKKIECGNNYGWRQFEGDRCMQQIEDQFPETCEFLDRSPFTFPEFNYCHPDFYPVDHPS-YIVSDQSICGDRSVIGTAVIAGYVYRGAKYDDLLGGNLIFADFTLNRLYHLFPTKGGGWGSGTIKGDDFFAVSHIAEDNDGELYVVQYQGTIFEMPCGDLC 455
BLAST of mRNA_H-elongata_contig14341.2990.1 vs. uniprot
Match: D7G961_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G961_ECTSI) HSP 1 Score: 254 bits (649), Expect = 2.790e-74 Identity = 113/197 (57.36%), Postives = 152/197 (77.16%), Query Frame = 1
Query: 322 SEICAIGFRNPWRCGFDSLTDELYCGNVGHNYIESIYNIECGNNYGWVRFEGSRCTEYSEDDYGS--CEDVDRSSYTFPIFEYCHYDYFSTSSSQDEYTGGVDICGDRNITGNTVIGGYVYRGQAYADLIYGAYVFAEYEGRNIFYILEQDDGAWTSGTIISDGSVRVYSFSEDIDGELFIIDDNNDIYYVPCGDLC 906
+EICAIG RNPWRC FD L D+LYCG+VG +E I IECGNNYGW RFEGSRC E +D+ + C+ VDRS +T+P+FEYCH D+ ST + + E+TGG D CG+R + GN VIGGYVYRG ++DL+ GAY+F + RNI+++ E++DG W GTI+SD SV++ SF+ED++GE+ ++D N+DIY++PCGDLC
Sbjct: 289 AEICAIGLRNPWRCSFDRLNDDLYCGDVGQISVEEINFIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSDFTYPLFEYCHPDFDSTDADEQEFTGGADTCGNRFVVGNCVIGGYVYRGNFFSDLLDGAYIFGDSTMRNIYFLKEEEDG-WAVGTIVSDASVQIISFAEDVNGEIVLLDYNHDIYHMPCGDLC 484
BLAST of mRNA_H-elongata_contig14341.2990.1 vs. uniprot
Match: D7G962_ECTSI (GSDH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G962_ECTSI) HSP 1 Score: 236 bits (601), Expect = 1.890e-71 Identity = 116/214 (54.21%), Postives = 145/214 (67.76%), Query Frame = 1
Query: 1 KSRLSKFEYFADDPDSTRDSEEVLLETAERPTYMHNGGWLGFKPSAYGDTADYHDLYWSVGDAGPQKDTNDHAQRTDILFGSIVRISVPSDGTGYEVPSDNYPGAELSEICAIGFRNPWRCGFDSLTDELYCGNVGHNYIESIYNIECGNNYGWVRFEGSRCTEYSEDDYGS--CEDVDRSSYTFPIFEYCHYDYFSTSSSQDEYTGGVDICGD 636
++RL++F Y D +TR SEEVLL T R +H GWLGFKPSAYG+ Y DLYW+ GD GPQ D +H+Q + G+++RISVP+DGTGY +P NY G++ +EICAIG RNPWRC FD L D+LYCG+VG E I +ECGNNYGW RFEGSRC E +D+ + C+ VDRS +TFP+FEYCH D+ ST DIC D
Sbjct: 193 RNRLARFTYVPGDAAATRASEEVLLTTVPRFISVHAAGWLGFKPSAYGNPG-YQDLYWTTGDGGPQTDPFNHSQDETTMLGAMMRISVPADGTGYTIPPGNYHGSK-AEICAIGLRNPWRCSFDRLNDDLYCGDVGQISAEEINLVECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSGFTFPLFEYCHPDFDST-----------DICAD 393
BLAST of mRNA_H-elongata_contig14341.2990.1 vs. uniprot
Match: D7G957_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G957_ECTSI) HSP 1 Score: 213 bits (541), Expect = 1.320e-59 Identity = 114/302 (37.75%), Postives = 156/302 (51.66%), Query Frame = 1
Query: 1 KSRLSKFEYFADDPDSTRDSEEVLLETAERPTYMHNGGWLGFKPSAYGDTADYHDLYWSVGDAGPQKDTNDHAQRTDILFGSIVRISVPSDGTGYEVPSDNYPGAELSEICAIGFRNPWRCGFDSLTDELYCGNVGHNYIESIYNIECGNNYGWVRFEGSRCTEYSEDDYGSCEDVDRSSYTFPIFEYCHYDYFSTSSSQDEYTGGVDICGDRNITGNTVIGGYVYRGQAYADLIYGAYVFAEYEGRNIFYILEQDDGAWTSGTIISDGSVRVYSFSEDIDGELFIIDDNNDIYYVPCGDLC 906
++RL+KF YF +DP +TR SEEVLL T + +H+ GWLGFKPS YG+ Y DLYW+ GD GPQ D +H+Q + G+++RISVP+DGTGY +PS NYPGA+ +E+CAIG RNPWRCGFD L D+LYCG+VGH +E I IE NI+++ E++DG W GTIISD SV++ SF+ED++GE+ ++D +++Y++PCGDLC
Sbjct: 219 RNRLAKFTYFPEDPVATRASEEVLLTTVPKYNSIHSAGWLGFKPSDYGNPG-YSDLYWTTGDGGPQTDPFNHSQDETTMLGAMMRISVPADGTGYTIPSGNYPGAK-AEVCAIGLRNPWRCGFDRLNDDLYCGDVGHTLVEEINFIE----------------------------------------------------------------------------------------------------NIYFLREEEDG-WAVGTIISDASVQIVSFAEDVNGEIMLLDYQHNMYHMPCGDLC 417 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14341.2990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14341.2990.1 >prot_H-elongata_contig14341.2990.1 ID=prot_H-elongata_contig14341.2990.1|Name=mRNA_H-elongata_contig14341.2990.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=302bp KSRLSKFEYFADDPDSTRDSEEVLLETAERPTYMHNGGWLGFKPSAYGDTback to top mRNA from alignment at H-elongata_contig14341:27..3818- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14341.2990.1 ID=mRNA_H-elongata_contig14341.2990.1|Name=mRNA_H-elongata_contig14341.2990.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3792bp|location=Sequence derived from alignment at H-elongata_contig14341:27..3818- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14341:27..3818- >mRNA_H-elongata_contig14341.2990.1 ID=mRNA_H-elongata_contig14341.2990.1|Name=mRNA_H-elongata_contig14341.2990.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1812bp|location=Sequence derived from alignment at H-elongata_contig14341:27..3818- (Himanthalia elongata Himel1 dioecious)back to top |