mRNA_H-elongata_contig143187.2981.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig143187.2981.1
Unique NamemRNA_H-elongata_contig143187.2981.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: A0A097IUD4_9PHAE (Phosphoenolpyruvate carboxylase n=5 Tax=Sargassum TaxID=3015 RepID=A0A097IUD4_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.720e-31
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 1
Query:    1 QAYRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
            +AYRDIVRRDERFVPYFRTATPELELG+LNIGSRPAKRRPTGGVETLRAIPWVFSWTQ R
Sbjct:  731 EAYRDIVRRDERFVPYFRTATPELELGSLNIGSRPAKRRPTGGVETLRAIPWVFSWTQTR 790          
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: A0A097IUC8_9PHAE (Phosphoenolpyruvate carboxylase n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A097IUC8_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.340e-29
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 1
Query:    1 QAYRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
            +AYR+IVR+D RFVPYFRTATPELELGALNIGSRPAKRRPTGGVE+LRAIPWVFSWTQ R
Sbjct:  730 EAYREIVRKDARFVPYFRTATPELELGALNIGSRPAKRRPTGGVESLRAIPWVFSWTQTR 789          
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: D8LTN1_ECTSI (Phosphoenolpyruvate carboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN1_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.500e-29
Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 1
Query:    4 AYRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
            AYRDIVR+D RFVPYFRTATPELELG LNIGSRPAKRRPTGGVE+LRAIPWVFSWTQ R
Sbjct:  731 AYRDIVRKDPRFVPYFRTATPELELGGLNIGSRPAKRRPTGGVESLRAIPWVFSWTQTR 789          
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: A0A0A0V6T3_SACJA (Phosphoenolpyruvate carboxylase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A0A0V6T3_SACJA)

HSP 1 Score: 115 bits (287), Expect = 2.200e-28
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 QAYRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
            +AYR IVR+D RFVPY RTATPELELGALNIGSRPAKRRPTGGVE+LRAIPWVFSWTQ R
Sbjct:  730 EAYRGIVRKDPRFVPYLRTATPELELGALNIGSRPAKRRPTGGVESLRAIPWVFSWTQTR 789          
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: A0A7S2R4V1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R4V1_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.300e-26
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 1
Query:    7 YRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
            YR++VR + +FVPYFR ATPELELG+LNIGSRPAKR P GG+E+LRAIPW F+WTQ R
Sbjct:   59 YRELVREEPKFVPYFRQATPELELGSLNIGSRPAKRNPKGGIESLRAIPWTFAWTQTR 116          
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: A0A835YNR8_9STRA (Phosphoenolpyruvate carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR8_9STRA)

HSP 1 Score: 107 bits (268), Expect = 8.130e-26
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 1
Query:    7 YRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
            YR+IVR D +FV YFR +TPELELGALNIGSRPAKRRPTGGVETLRAIPWVF+WTQ R
Sbjct:  695 YRNIVRHDPKFVGYFRASTPELELGALNIGSRPAKRRPTGGVETLRAIPWVFAWTQTR 752          
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: A0A7S0CA55_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CA55_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.040e-25
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 1
Query:    1 QAYRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
            +AYRDIVR DERFVPYFR ATPE+EL  LNIGSRPAKR+ +GGVE+LRAIPW+F+WTQ R
Sbjct:  158 RAYRDIVRGDERFVPYFRAATPEMELADLNIGSRPAKRKASGGVESLRAIPWIFAWTQTR 217          
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: A0A384UU55_9FABA (Putative phosphoenolpyruvate carboxylase (Fragment) n=2 Tax=Dalbergia TaxID=53862 RepID=A0A384UU55_9FABA)

HSP 1 Score: 100 bits (249), Expect = 1.370e-25
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1
Query:    1 QAYRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
            Q YR IV ++ RFV YFR ATPELE G +NIGSRPAKRRP+GG+ETLRAIPW+F+WTQ R
Sbjct:    7 QEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTR 66          
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: A0A7R9Z7G9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z7G9_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.070e-25
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 1
Query:    4 AYRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
            AYR +VR + RFVPYFR ATPELELG LNIGSRPAKR P GG+E+LRAIPW F+WTQ R
Sbjct:   18 AYRQLVREEPRFVPYFRQATPELELGQLNIGSRPAKRNPKGGIESLRAIPWTFAWTQTR 76          
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: A0A7S2YQX4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YQX4_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.250e-25
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 1
Query:    4 AYRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
            +YR +VR DERFVPYFR+ATPELEL  LNIGSRPAKR+ TGGVE+LRAIPW F+WTQ R
Sbjct:  108 SYRSVVRGDERFVPYFRSATPELELSNLNIGSRPAKRKATGGVESLRAIPWNFAWTQTR 166          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A097IUD4_9PHAE1.720e-3195.00Phosphoenolpyruvate carboxylase n=5 Tax=Sargassum ... [more]
A0A097IUC8_9PHAE1.340e-2990.00Phosphoenolpyruvate carboxylase n=2 Tax=Scytosipho... [more]
D8LTN1_ECTSI2.500e-2991.53Phosphoenolpyruvate carboxylase n=2 Tax=Ectocarpus... [more]
A0A0A0V6T3_SACJA2.200e-2888.33Phosphoenolpyruvate carboxylase n=1 Tax=Saccharina... [more]
A0A7S2R4V1_9STRA4.300e-2674.14Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A835YNR8_9STRA8.130e-2684.48Phosphoenolpyruvate carboxylase n=1 Tax=Tribonema ... [more]
A0A7S0CA55_9STRA1.040e-2578.33Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A384UU55_9FABA1.370e-2573.33Putative phosphoenolpyruvate carboxylase (Fragment... [more]
A0A7R9Z7G9_9STRA2.070e-2576.27Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2YQX4_9STRA2.250e-2577.97Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig143187contigH-elongata_contig143187:1128..1313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue7.8e-25
Seed eggNOG ortholog2880.D8LTN1
KEGG rclassRC02741
KEGG koko:K01595
KEGG ReactionR00345
KEGG Pathwayko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200
KEGG ModuleM00168,M00170,M00171,M00172,M00173,M00346,M00374
EggNOG free text desc.phosphoenolpyruvate carboxylase activity
EggNOG OGs2QPVS@2759,COG2352@1
EC4.1.1.31
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929849.8615274-CDS-H-elongata_contig143187:1127..13131622929849.8615274-CDS-H-elongata_contig143187:1127..1313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143187 1128..1313 -
1691679182.5616379-CDS-H-elongata_contig143187:1127..13131691679182.5616379-CDS-H-elongata_contig143187:1127..1313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig143187 1128..1313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig143187.2981.1prot_H-elongata_contig143187.2981.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig143187 1128..1313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig143187.2981.1

>prot_H-elongata_contig143187.2981.1 ID=prot_H-elongata_contig143187.2981.1|Name=mRNA_H-elongata_contig143187.2981.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
QAYRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAI
PWVFSWTQVRG*
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mRNA from alignment at H-elongata_contig143187:1128..1313-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig143187.2981.1 ID=mRNA_H-elongata_contig143187.2981.1|Name=mRNA_H-elongata_contig143187.2981.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig143187:1128..1313- (Himanthalia elongata Himel1 dioecious)
CAGGCATACCGAGACATCGTTCGTCGGGACGAGCGCTTCGTGCCGTACTT CCGCACGGCCACACCAGAGCTCGAGCTGGGGGCCCTCAACATCGGATCGC GCCCCGCGAAGCGAAGGCCTACCGGAGGGGTGGAAACCCTTCGAGCCATC CCCTGGGTGTTCTCGTGGACTCAGGTGCGTGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig143187:1128..1313-

>mRNA_H-elongata_contig143187.2981.1 ID=mRNA_H-elongata_contig143187.2981.1|Name=mRNA_H-elongata_contig143187.2981.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig143187:1128..1313- (Himanthalia elongata Himel1 dioecious)
CAGGCATACCGAGACATCGTTCGTCGGGACGAGCGCTTCGTGCCGTACTT
CCGCACGGCCACACCAGAGCTCGAGCTGGGGGCCCTCAACATCGGATCGC
GCCCCGCGAAGCGAAGGCCTACCGGAGGGGTGGAAACCCTTCGAGCCATC
CCCTGGGTGTTCTCGTGGACTCAGGTGCGTGGGTGACAGGCATACCGAGA
CATCGTTCGTCGGGACGAGCGCTTCGTGCCGTACTTCCGCACGGCCACAC
CAGAGCTCGAGCTGGGGGCCCTCAACATCGGATCGCGCCCCGCGAAGCGA
AGGCCTACCGGAGGGGTGGAAACCCTTCGAGCCATCCCCTGGGTGTTCTC
GTGGACTCAGGTGCGTGGGTGA
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