mRNA_H-elongata_contig143187.2981.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: A0A097IUD4_9PHAE (Phosphoenolpyruvate carboxylase n=5 Tax=Sargassum TaxID=3015 RepID=A0A097IUD4_9PHAE) HSP 1 Score: 124 bits (310), Expect = 1.720e-31 Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 1
Query: 1 QAYRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
+AYRDIVRRDERFVPYFRTATPELELG+LNIGSRPAKRRPTGGVETLRAIPWVFSWTQ R
Sbjct: 731 EAYRDIVRRDERFVPYFRTATPELELGSLNIGSRPAKRRPTGGVETLRAIPWVFSWTQTR 790
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: A0A097IUC8_9PHAE (Phosphoenolpyruvate carboxylase n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A097IUC8_9PHAE) HSP 1 Score: 118 bits (296), Expect = 1.340e-29 Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 1
Query: 1 QAYRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
+AYR+IVR+D RFVPYFRTATPELELGALNIGSRPAKRRPTGGVE+LRAIPWVFSWTQ R
Sbjct: 730 EAYREIVRKDARFVPYFRTATPELELGALNIGSRPAKRRPTGGVESLRAIPWVFSWTQTR 789
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: D8LTN1_ECTSI (Phosphoenolpyruvate carboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN1_ECTSI) HSP 1 Score: 117 bits (294), Expect = 2.500e-29 Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 1
Query: 4 AYRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
AYRDIVR+D RFVPYFRTATPELELG LNIGSRPAKRRPTGGVE+LRAIPWVFSWTQ R
Sbjct: 731 AYRDIVRKDPRFVPYFRTATPELELGGLNIGSRPAKRRPTGGVESLRAIPWVFSWTQTR 789
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: A0A0A0V6T3_SACJA (Phosphoenolpyruvate carboxylase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A0A0V6T3_SACJA) HSP 1 Score: 115 bits (287), Expect = 2.200e-28 Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 1
Query: 1 QAYRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
+AYR IVR+D RFVPY RTATPELELGALNIGSRPAKRRPTGGVE+LRAIPWVFSWTQ R
Sbjct: 730 EAYRGIVRKDPRFVPYLRTATPELELGALNIGSRPAKRRPTGGVESLRAIPWVFSWTQTR 789
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: A0A7S2R4V1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R4V1_9STRA) HSP 1 Score: 101 bits (251), Expect = 4.300e-26 Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 1
Query: 7 YRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
YR++VR + +FVPYFR ATPELELG+LNIGSRPAKR P GG+E+LRAIPW F+WTQ R
Sbjct: 59 YRELVREEPKFVPYFRQATPELELGSLNIGSRPAKRNPKGGIESLRAIPWTFAWTQTR 116
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: A0A835YNR8_9STRA (Phosphoenolpyruvate carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR8_9STRA) HSP 1 Score: 107 bits (268), Expect = 8.130e-26 Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 1
Query: 7 YRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
YR+IVR D +FV YFR +TPELELGALNIGSRPAKRRPTGGVETLRAIPWVF+WTQ R
Sbjct: 695 YRNIVRHDPKFVGYFRASTPELELGALNIGSRPAKRRPTGGVETLRAIPWVFAWTQTR 752
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: A0A7S0CA55_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CA55_9STRA) HSP 1 Score: 105 bits (263), Expect = 1.040e-25 Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 1
Query: 1 QAYRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
+AYRDIVR DERFVPYFR ATPE+EL LNIGSRPAKR+ +GGVE+LRAIPW+F+WTQ R
Sbjct: 158 RAYRDIVRGDERFVPYFRAATPEMELADLNIGSRPAKRKASGGVESLRAIPWIFAWTQTR 217
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: A0A384UU55_9FABA (Putative phosphoenolpyruvate carboxylase (Fragment) n=2 Tax=Dalbergia TaxID=53862 RepID=A0A384UU55_9FABA) HSP 1 Score: 100 bits (249), Expect = 1.370e-25 Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1
Query: 1 QAYRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
Q YR IV ++ RFV YFR ATPELE G +NIGSRPAKRRP+GG+ETLRAIPW+F+WTQ R
Sbjct: 7 QEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTR 66
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: A0A7R9Z7G9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z7G9_9STRA) HSP 1 Score: 102 bits (254), Expect = 2.070e-25 Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 1
Query: 4 AYRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
AYR +VR + RFVPYFR ATPELELG LNIGSRPAKR P GG+E+LRAIPW F+WTQ R
Sbjct: 18 AYRQLVREEPRFVPYFRQATPELELGQLNIGSRPAKRNPKGGIESLRAIPWTFAWTQTR 76
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Match: A0A7S2YQX4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YQX4_9STRA) HSP 1 Score: 102 bits (253), Expect = 2.250e-25 Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 1
Query: 4 AYRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIPWVFSWTQVR 180
+YR +VR DERFVPYFR+ATPELEL LNIGSRPAKR+ TGGVE+LRAIPW F+WTQ R
Sbjct: 108 SYRSVVRGDERFVPYFRSATPELELSNLNIGSRPAKRKATGGVESLRAIPWNFAWTQTR 166 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143187.2981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig143187.2981.1 >prot_H-elongata_contig143187.2981.1 ID=prot_H-elongata_contig143187.2981.1|Name=mRNA_H-elongata_contig143187.2981.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp QAYRDIVRRDERFVPYFRTATPELELGALNIGSRPAKRRPTGGVETLRAIback to top mRNA from alignment at H-elongata_contig143187:1128..1313- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig143187.2981.1 ID=mRNA_H-elongata_contig143187.2981.1|Name=mRNA_H-elongata_contig143187.2981.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig143187:1128..1313- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig143187:1128..1313- >mRNA_H-elongata_contig143187.2981.1 ID=mRNA_H-elongata_contig143187.2981.1|Name=mRNA_H-elongata_contig143187.2981.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig143187:1128..1313- (Himanthalia elongata Himel1 dioecious)back to top |